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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 169, 182, 249 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AcuI | CTGAAG | 1 cut(s) | 515 |
| AfaI | GTAC | 1 cut(s) | 85 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 293, 454, 560 |
| AgsI | TTSAA | 4 cut(s) | 43, 256, 434, 569 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 3 cut(s) | 68, 143, 529 |
| AluI | AGCT | 3 cut(s) | 68, 143, 529 |
| AlwI | GGATC | 3 cut(s) | 169, 182, 249 |
| AoxI | GGCC | 2 cut(s) | 98, 329 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 276 |
| AspS9I | GGNCC | 4 cut(s) | 98, 185, 261, 572 |
| AsuHPI | GGTGA | 1 cut(s) | 236 |
| AsuII | TTCGAA | 1 cut(s) | 215 |
| AvaII | GGWCC | 3 cut(s) | 185, 261, 572 |
| AxyI | CCTNAGG | 1 cut(s) | 333 |
| BamHI | GGATCC | 1 cut(s) | 174 |
| BccI | CCATC | 2 cut(s) | 89, 228 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BciVI | GTATCC | 1 cut(s) | 158 |
| BfuI | GTATCC | 1 cut(s) | 158 |
| Bme1390I | CCNGG | 1 cut(s) | 231 |
| Bme18I | GGWCC | 3 cut(s) | 185, 261, 572 |
| BmgT120I | GGNCC | 4 cut(s) | 98, 185, 261, 572 |
| BmiI | GGNNCC | 4 cut(s) | 176, 186, 187, 339 |
| BmrFI | CCNGG | 1 cut(s) | 231 |
| BmrI | ACTGGG | 1 cut(s) | 96 |
| BmuI | ACTGGG | 1 cut(s) | 96 |
| Bpu14I | TTCGAA | 1 cut(s) | 215 |
| BpuEI | CTTGAG | 3 cut(s) | 297, 405, 455 |
| BsaJI | CCNNGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 293, 454, 560 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| Bse21I | CCTNAGG | 1 cut(s) | 333 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 459 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| BseGI | GGATG | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 293, 454, 560 |
| BseMI | GCAATG | 2 cut(s) | 84, 459 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BshFI | GGCC | 2 cut(s) | 100, 331 |
| BslFI | GGGAC | 3 cut(s) | 103, 171, 498 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 293, 454, 560 |
| BsmFI | GGGAC | 3 cut(s) | 103, 171, 498 |
| BsnI | GGCC | 2 cut(s) | 100, 331 |
| Bsp119I | TTCGAA | 1 cut(s) | 215 |
| Bsp143I | GATC | 2 cut(s) | 174, 241 |
| BspANI | GGCC | 2 cut(s) | 100, 331 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspHI | TCATGA | 2 cut(s) | 501, 514 |
| BspLI | GGNNCC | 4 cut(s) | 176, 186, 187, 339 |
| BspPI | GGATC | 3 cut(s) | 169, 182, 249 |
| BspT104I | TTCGAA | 1 cut(s) | 215 |
| BsrDI | GCAATG | 2 cut(s) | 84, 459 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssECI | CCNNGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| BssMI | GATC | 2 cut(s) | 174, 241 |
| BssT1I | CCWWGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| BstBI | TTCGAA | 1 cut(s) | 215 |
| BstDEI | CTNAG | 2 cut(s) | 51, 333 |
| BstF5I | GGATG | 1 cut(s) | 239 |
| BstKTI | GATC | 2 cut(s) | 177, 244 |
| BstMBI | GATC | 2 cut(s) | 174, 241 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 74 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 229 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| Bsu36I | CCTNAGG | 1 cut(s) | 333 |
| BsuI | GTATCC | 1 cut(s) | 158 |
| BsuRI | GGCC | 2 cut(s) | 100, 331 |
| BtsCI | GGATG | 1 cut(s) | 239 |
| CciI | TCATGA | 2 cut(s) | 501, 514 |
| Cfr13I | GGNCC | 4 cut(s) | 98, 185, 261, 572 |
| Csp6I | GTAC | 1 cut(s) | 84 |
| CviAII | CATG | 3 cut(s) | 203, 502, 515 |
| CviJI | RGCY | 8 cut(s) | 68, 100, 143, 318, 331, 425, 529, 564 |
| CviKI_1 | RGCY | 8 cut(s) | 68, 100, 143, 318, 331, 425, 529, 564 |
| CviQI | GTAC | 1 cut(s) | 84 |
| DdeI | CTNAG | 2 cut(s) | 51, 333 |
| DpnI | GATC | 2 cut(s) | 176, 243 |
| DpnII | GATC | 2 cut(s) | 174, 241 |
| Eco130I | CCWWGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| Eco147I | AGGCCT | 1 cut(s) | 331 |
| Eco47I | GGWCC | 3 cut(s) | 185, 261, 572 |
| Eco57I | CTGAAG | 1 cut(s) | 515 |
| Eco81I | CCTNAGG | 1 cut(s) | 333 |
| EcoO109I | RGGNCCY | 1 cut(s) | 185 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoT14I | CCWWGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| ErhI | CCWWGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| FaeI | CATG | 3 cut(s) | 206, 505, 518 |
| FaiI | YATR | 7 cut(s) | 204, 211, 225, 387, 450, 503, 516 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 548, 580 |
| FaqI | GGGAC | 3 cut(s) | 103, 171, 498 |
| FatI | CATG | 3 cut(s) | 202, 501, 514 |
| FokI | GGATG | 1 cut(s) | 246 |
| HaeIII | GGCC | 2 cut(s) | 100, 331 |
| Hin1II | CATG | 3 cut(s) | 206, 505, 518 |
| HindIII | AAGCTT | 3 cut(s) | 66, 141, 527 |
| HphI | GGTGA | 1 cut(s) | 236 |
| Hpy166II | GTNNAC | 3 cut(s) | 84, 261, 496 |
| Hpy188I | TCNGA | 5 cut(s) | 29, 64, 282, 327, 534 |
| Hpy188III | TCNNGA | 3 cut(s) | 472, 502, 515 |
| Hpy8I | GTNNAC | 3 cut(s) | 84, 261, 496 |
| HpyAV | CCTTC | 1 cut(s) | 563 |
| HpyCH4IV | ACGT | 2 cut(s) | 193, 307 |
| HpyCH4V | TGCA | 1 cut(s) | 464 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 74 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 333 |
| HpySE526I | ACGT | 2 cut(s) | 193, 307 |
| Hsp92II | CATG | 3 cut(s) | 206, 505, 518 |
| KflI | GGGWCCC | 1 cut(s) | 185 |
| Kzo9I | GATC | 2 cut(s) | 174, 241 |
| LmnI | GCTCC | 1 cut(s) | 155 |
| LpnPI | CCDG | 4 cut(s) | 72, 216, 243, 320 |
| MaeII | ACGT | 2 cut(s) | 193, 307 |
| MalI | GATC | 2 cut(s) | 176, 243 |
| MboI | GATC | 2 cut(s) | 174, 241 |
| MboII | GAAGA | 1 cut(s) | 39 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MluCI | AATT | 3 cut(s) | 155, 412, 543 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 9 cut(s) | 155, 231, 321, 321, 342, 351, 394, 479, 554 |
| MroXI | GAANNNNTTC | 1 cut(s) | 276 |
| MseI | TTAA | 1 cut(s) | 36 |
| MslI | CAYNNNNRTG | 1 cut(s) | 519 |
| MspR9I | CCNGG | 1 cut(s) | 231 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 74 |
| NdeII | GATC | 2 cut(s) | 174, 241 |
| NlaIII | CATG | 3 cut(s) | 206, 505, 518 |
| NlaIV | GGNNCC | 4 cut(s) | 176, 186, 187, 339 |
| NspV | TTCGAA | 1 cut(s) | 215 |
| PagI | TCATGA | 2 cut(s) | 501, 514 |
| PceI | AGGCCT | 1 cut(s) | 331 |
| PdmI | GAANNNNTTC | 1 cut(s) | 276 |
| PfoI | TCCNGGA | 1 cut(s) | 229 |
| PpuMI | RGGWCCY | 1 cut(s) | 185 |
| Psp5II | RGGWCCY | 1 cut(s) | 185 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 4 cut(s) | 176, 186, 187, 339 |
| PspPI | GGNCC | 4 cut(s) | 98, 185, 261, 572 |
| PspPPI | RGGWCCY | 1 cut(s) | 185 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| RsaI | GTAC | 1 cut(s) | 85 |
| RsaNI | GTAC | 1 cut(s) | 84 |
| RseI | CAYNNNNRTG | 1 cut(s) | 519 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| Sau3AI | GATC | 2 cut(s) | 174, 241 |
| Sau96I | GGNCC | 4 cut(s) | 98, 185, 261, 572 |
| ScrFI | CCNGG | 1 cut(s) | 231 |
| SetI | ASST | 9 cut(s) | 70, 145, 196, 224, 310, 339, 471, 531, 574 |
| SfuI | TTCGAA | 1 cut(s) | 215 |
| SinI | GGWCC | 3 cut(s) | 185, 261, 572 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 519 |
| SmlI | CTYRAG | 3 cut(s) | 312, 420, 470 |
| SmoI | CTYRAG | 3 cut(s) | 312, 420, 470 |
| Sse9I | AATT | 3 cut(s) | 155, 412, 543 |
| SseBI | AGGCCT | 1 cut(s) | 331 |
| StuI | AGGCCT | 1 cut(s) | 331 |
| StyD4I | CCNGG | 1 cut(s) | 229 |
| StyI | CCWWGG | 5 cut(s) | 169, 178, 197, 426, 453 |
| TaiI | ACGT | 2 cut(s) | 196, 310 |
| TaqI | TCGA | 1 cut(s) | 215 |
| TasI | AATT | 3 cut(s) | 155, 412, 543 |
| TatI | WGTACW | 1 cut(s) | 83 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TspDTI | ATGAA | 4 cut(s) | 285, 490, 503, 531 |
| VpaK11BI | GGWCC | 3 cut(s) | 185, 261, 572 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 424 |
| XmnI | GAANNNNTTC | 1 cut(s) | 276 |