Retrotransposon gag protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 139 - 220 | 6.7e-11 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1120 |
| AccII | CGCG | 1 cut(s) | 99 |
| AccIII | TCCGGA | 1 cut(s) | 470 |
| AciI | CCGC | 3 cut(s) | 980, 1040, 1118 |
| AclWI | GGATC | 5 cut(s) | 38, 481, 1010, 1265, 1278 |
| AcsI | RAATTY | 1 cut(s) | 1157 |
| AfaI | GTAC | 4 cut(s) | 41, 61, 187, 820 |
| AflII | CTTAAG | 3 cut(s) | 275, 344, 797 |
| AflIII | ACRYGT | 2 cut(s) | 922, 935 |
| AgsI | TTSAA | 4 cut(s) | 836, 992, 1073, 1244 |
| AjnI | CCWGG | 1 cut(s) | 1311 |
| AleI | CACNNNNGTG | 1 cut(s) | 1261 |
| AluBI | AGCT | 9 cut(s) | 52, 73, 274, 725, 755, 790, 848, 974, 1281 |
| AluI | AGCT | 9 cut(s) | 52, 73, 274, 725, 755, 790, 848, 974, 1281 |
| Alw21I | GWGCWC | 2 cut(s) | 630, 911 |
| Alw26I | GTCTC | 1 cut(s) | 157 |
| AlwI | GGATC | 5 cut(s) | 38, 481, 1010, 1265, 1278 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 386 |
| Aor13HI | TCCGGA | 1 cut(s) | 470 |
| AoxI | GGCC | 1 cut(s) | 1004 |
| ApeKI | GCWGC | 1 cut(s) | 689 |
| ApoI | RAATTY | 1 cut(s) | 1157 |
| AseI | ATTAAT | 1 cut(s) | 947 |
| AspLEI | GCGC | 2 cut(s) | 101, 886 |
| AsuC2I | CCSGG | 1 cut(s) | 1275 |
| AsuHPI | GGTGA | 3 cut(s) | 229, 472, 1228 |
| AsuII | TTCGAA | 1 cut(s) | 76 |
| BamHI | GGATCC | 1 cut(s) | 1270 |
| BbsI | GAAGAC | 2 cut(s) | 177, 402 |
| Bbv12I | GWGCWC | 2 cut(s) | 630, 911 |
| BbvI | GCAGC | 1 cut(s) | 701 |
| BccI | CCATC | 3 cut(s) | 130, 254, 949 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 1 cut(s) | 1313 |
| BcnI | CCSGG | 1 cut(s) | 1275 |
| BcoDI | GTCTC | 1 cut(s) | 157 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfoI | RGCGCY | 1 cut(s) | 887 |
| BfrI | CTTAAG | 3 cut(s) | 275, 344, 797 |
| BglII | AGATCT | 1 cut(s) | 1080 |
| BisI | GCNGC | 1 cut(s) | 690 |
| BlsI | GCNGC | 1 cut(s) | 691 |
| BmcAI | AGTACT | 1 cut(s) | 820 |
| Bme1390I | CCNGG | 2 cut(s) | 1275, 1313 |
| BmiI | GGNNCC | 2 cut(s) | 703, 1272 |
| BmrFI | CCNGG | 2 cut(s) | 1275, 1313 |
| BmsI | GCATC | 6 cut(s) | 243, 319, 349, 669, 676, 1117 |
| BpiI | GAAGAC | 2 cut(s) | 177, 402 |
| Bpu10I | CCTNAGC | 2 cut(s) | 48, 444 |
| Bpu14I | TTCGAA | 1 cut(s) | 76 |
| BpuEI | CTTGAG | 2 cut(s) | 157, 705 |
| BpuMI | CCSGG | 1 cut(s) | 1275 |
| BsaJI | CCNNGG | 1 cut(s) | 310 |
| BsaWI | WCCGGW | 1 cut(s) | 470 |
| Bse1I | ACTGG | 1 cut(s) | 876 |
| BseAI | TCCGGA | 1 cut(s) | 470 |
| BseBI | CCWGG | 1 cut(s) | 1313 |
| BseDI | CCNNGG | 1 cut(s) | 310 |
| BseGI | GGATG | 4 cut(s) | 107, 122, 265, 334 |
| BseMII | CTCAG | 2 cut(s) | 27, 39 |
| BseNI | ACTGG | 1 cut(s) | 876 |
| BseXI | GCAGC | 1 cut(s) | 701 |
| Bsh1236I | CGCG | 1 cut(s) | 99 |
| BshFI | GGCC | 1 cut(s) | 1006 |
| BsiHKAI | GWGCWC | 2 cut(s) | 630, 911 |
| BsiSI | CCGG | 3 cut(s) | 471, 541, 1275 |
| BslFI | GGGAC | 2 cut(s) | 933, 1127 |
| BsmAI | GTCTC | 1 cut(s) | 157 |
| BsmFI | GGGAC | 2 cut(s) | 933, 1127 |
| BsmI | GAATGC | 2 cut(s) | 416, 506 |
| BsnI | GGCC | 1 cut(s) | 1006 |
| Bsp119I | TTCGAA | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 630, 911 |
| Bsp13I | TCCGGA | 1 cut(s) | 470 |
| Bsp143I | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| Bsp19I | CCATGG | 1 cut(s) | 310 |
| BspACI | CCGC | 3 cut(s) | 980, 1040, 1118 |
| BspANI | GGCC | 1 cut(s) | 1006 |
| BspCNI | CTCAG | 2 cut(s) | 28, 40 |
| BspEI | TCCGGA | 1 cut(s) | 470 |
| BspFNI | CGCG | 1 cut(s) | 99 |
| BspLI | GGNNCC | 2 cut(s) | 703, 1272 |
| BspPI | GGATC | 5 cut(s) | 38, 481, 1010, 1265, 1278 |
| BspT104I | TTCGAA | 1 cut(s) | 76 |
| BspTI | CTTAAG | 3 cut(s) | 275, 344, 797 |
| BsrBI | CCGCTC | 1 cut(s) | 1120 |
| BsrI | ACTGG | 1 cut(s) | 876 |
| BssECI | CCNNGG | 1 cut(s) | 310 |
| BssMI | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| BssT1I | CCWWGG | 1 cut(s) | 310 |
| Bst2UI | CCWGG | 1 cut(s) | 1313 |
| Bst4CI | ACNGT | 4 cut(s) | 85, 185, 388, 1210 |
| Bst6I | CTCTTC | 2 cut(s) | 144, 153 |
| BstAFI | CTTAAG | 3 cut(s) | 275, 344, 797 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 906 |
| BstBI | TTCGAA | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 2 cut(s) | 381, 972 |
| BstDEI | CTNAG | 7 cut(s) | 36, 48, 65, 303, 444, 1123, 1260 |
| BstDSI | CCRYGG | 1 cut(s) | 310 |
| BstF5I | GGATG | 4 cut(s) | 107, 122, 265, 334 |
| BstFNI | CGCG | 1 cut(s) | 99 |
| BstH2I | RGCGCY | 1 cut(s) | 887 |
| BstHHI | GCGC | 2 cut(s) | 101, 886 |
| BstKTI | GATC | 7 cut(s) | 31, 46, 476, 673, 1018, 1083, 1273 |
| BstMAI | GTCTC | 1 cut(s) | 157 |
| BstMBI | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 906, 1003, 1046 |
| BstNI | CCWGG | 1 cut(s) | 1313 |
| BstNSI | RCATGY | 2 cut(s) | 926, 939 |
| BstSCI | CCNGG | 2 cut(s) | 1273, 1311 |
| BstUI | CGCG | 1 cut(s) | 99 |
| BstV1I | GCAGC | 1 cut(s) | 701 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 402 |
| BstX2I | RGATCY | 2 cut(s) | 1080, 1270 |
| BstYI | RGATCY | 2 cut(s) | 1080, 1270 |
| BsuRI | GGCC | 1 cut(s) | 1006 |
| BtgI | CCRYGG | 1 cut(s) | 310 |
| BtsCI | GGATG | 4 cut(s) | 107, 122, 265, 334 |
| BtsI | GCAGTG | 2 cut(s) | 907, 1242 |
| BtsIMutI | CAGTG | 2 cut(s) | 907, 1242 |
| Cac8I | GCNNGC | 2 cut(s) | 381, 972 |
| CaiI | CAGNNNCTG | 1 cut(s) | 386 |
| CfoI | GCGC | 2 cut(s) | 101, 886 |
| CseI | GACGC | 1 cut(s) | 793 |
| CsiI | ACCWGGT | 1 cut(s) | 1311 |
| Csp6I | GTAC | 4 cut(s) | 40, 60, 186, 819 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 117, 152 |
| CviQI | GTAC | 4 cut(s) | 40, 60, 186, 819 |
| DdeI | CTNAG | 7 cut(s) | 36, 48, 65, 303, 444, 1123, 1260 |
| DpnI | GATC | 7 cut(s) | 30, 45, 475, 672, 1017, 1082, 1272 |
| DpnII | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| Eam1104I | CTCTTC | 2 cut(s) | 144, 153 |
| EarI | CTCTTC | 2 cut(s) | 144, 153 |
| Eco130I | CCWWGG | 1 cut(s) | 310 |
| EcoRII | CCWGG | 1 cut(s) | 1311 |
| EcoT14I | CCWWGG | 1 cut(s) | 310 |
| EcoT22I | ATGCAT | 1 cut(s) | 552 |
| ErhI | CCWWGG | 1 cut(s) | 310 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 495, 527, 1053, 1085, 1067, 1099 |
| FaqI | GGGAC | 2 cut(s) | 933, 1127 |
| FauI | CCCGC | 1 cut(s) | 1033 |
| FauNDI | CATATG | 2 cut(s) | 357, 485 |
| Fnu4HI | GCNGC | 1 cut(s) | 690 |
| FokI | GGATG | 4 cut(s) | 94, 109, 272, 341 |
| Fsp4HI | GCNGC | 1 cut(s) | 690 |
| FspBI | CTAG | 1 cut(s) | 53 |
| GlaI | GCGC | 2 cut(s) | 100, 885 |
| GluI | GCNGC | 1 cut(s) | 690 |
| HaeII | RGCGCY | 1 cut(s) | 887 |
| HaeIII | GGCC | 1 cut(s) | 1006 |
| HapII | CCGG | 3 cut(s) | 471, 541, 1275 |
| HgaI | GACGC | 1 cut(s) | 793 |
| HhaI | GCGC | 2 cut(s) | 101, 886 |
| Hin6I | GCGC | 2 cut(s) | 99, 884 |
| HinP1I | GCGC | 2 cut(s) | 99, 884 |
| HinfI | GANTC | 5 cut(s) | 289, 490, 557, 582, 718 |
| HpaII | CCGG | 3 cut(s) | 471, 541, 1275 |
| HphI | GGTGA | 3 cut(s) | 229, 472, 1228 |
| Hpy166II | GTNNAC | 3 cut(s) | 62, 1111, 1307 |
| Hpy188I | TCNGA | 4 cut(s) | 252, 625, 931, 1097 |
| Hpy188III | TCNNGA | 4 cut(s) | 47, 88, 369, 471 |
| Hpy8I | GTNNAC | 3 cut(s) | 62, 1111, 1307 |
| HpyAV | CCTTC | 6 cut(s) | 6, 477, 517, 641, 647, 715 |
| HpyCH4III | ACNGT | 4 cut(s) | 85, 185, 388, 1210 |
| HpyCH4IV | ACGT | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 234, 340, 536, 550, 689, 900, 1130, 1176 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 906, 1003, 1046 |
| HpyF3I | CTNAG | 7 cut(s) | 36, 48, 65, 303, 444, 1123, 1260 |
| HpySE526I | ACGT | 1 cut(s) | 58 |
| HspAI | GCGC | 2 cut(s) | 99, 884 |
| Kpn2I | TCCGGA | 1 cut(s) | 470 |
| Kzo9I | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| LmnI | GCTCC | 3 cut(s) | 625, 701, 952 |
| Lsp1109I | GCAGC | 1 cut(s) | 701 |
| LweI | GCATC | 6 cut(s) | 243, 319, 349, 669, 676, 1117 |
| MabI | ACCWGGT | 1 cut(s) | 1311 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MaeII | ACGT | 1 cut(s) | 58 |
| MaeIII | GTNAC | 2 cut(s) | 741, 792 |
| MalI | GATC | 7 cut(s) | 30, 45, 475, 672, 1017, 1082, 1272 |
| MbiI | CCGCTC | 1 cut(s) | 1120 |
| MboI | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| MboII | GAAGA | 6 cut(s) | 90, 161, 167, 170, 182, 407 |
| MflI | RGATCY | 2 cut(s) | 1080, 1270 |
| MhlI | GDGCHC | 2 cut(s) | 630, 911 |
| MluCI | AATT | 6 cut(s) | 460, 770, 823, 836, 842, 1157 |
| MlyI | GAGTC | 2 cut(s) | 566, 712 |
| MmeI | TCCRAC | 1 cut(s) | 964 |
| MnlI | CCTC | 8 cut(s) | 145, 186, 257, 319, 427, 770, 805, 1057 |
| Mph1103I | ATGCAT | 1 cut(s) | 552 |
| MroI | TCCGGA | 1 cut(s) | 470 |
| MseI | TTAA | 7 cut(s) | 276, 345, 410, 798, 854, 947, 1193 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1261 |
| MspCI | CTTAAG | 3 cut(s) | 275, 344, 797 |
| MspI | CCGG | 3 cut(s) | 471, 541, 1275 |
| MspR9I | CCNGG | 2 cut(s) | 1275, 1313 |
| Mva1269I | GAATGC | 2 cut(s) | 416, 506 |
| MvaI | CCWGG | 1 cut(s) | 1313 |
| MvnI | CGCG | 1 cut(s) | 99 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 906, 1003, 1046 |
| NciI | CCSGG | 1 cut(s) | 1275 |
| NcoI | CCATGG | 1 cut(s) | 310 |
| NdeI | CATATG | 2 cut(s) | 357, 485 |
| NdeII | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| NlaIV | GGNNCC | 2 cut(s) | 703, 1272 |
| NmeAIII | GCCGAG | 1 cut(s) | 745 |
| NmuCI | GTSAC | 1 cut(s) | 792 |
| NsiI | ATGCAT | 1 cut(s) | 552 |
| NspI | RCATGY | 2 cut(s) | 926, 939 |
| NspV | TTCGAA | 1 cut(s) | 76 |
| OliI | CACNNNNGTG | 1 cut(s) | 1261 |
| PciI | ACATGT | 2 cut(s) | 922, 935 |
| PctI | GAATGC | 2 cut(s) | 416, 506 |
| PfeI | GAWTC | 3 cut(s) | 289, 490, 582 |
| PflFI | GACNNNGTC | 1 cut(s) | 401 |
| PkrI | GCNGC | 1 cut(s) | 691 |
| PleI | GAGTC | 2 cut(s) | 565, 712 |
| PpsI | GAGTC | 2 cut(s) | 565, 712 |
| PscI | ACATGT | 2 cut(s) | 922, 935 |
| PshBI | ATTAAT | 1 cut(s) | 947 |
| Psp6I | CCWGG | 1 cut(s) | 1311 |
| PspGI | CCWGG | 1 cut(s) | 1311 |
| PspN4I | GGNNCC | 2 cut(s) | 703, 1272 |
| PstNI | CAGNNNCTG | 1 cut(s) | 386 |
| PsuI | RGATCY | 2 cut(s) | 1080, 1270 |
| PsyI | GACNNNGTC | 1 cut(s) | 401 |
| RsaI | GTAC | 4 cut(s) | 41, 61, 187, 820 |
| RsaNI | GTAC | 4 cut(s) | 40, 60, 186, 819 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1261 |
| SaqAI | TTAA | 7 cut(s) | 276, 345, 410, 798, 854, 947, 1193 |
| SatI | GCNGC | 1 cut(s) | 690 |
| Sau3AI | GATC | 7 cut(s) | 28, 43, 473, 670, 1015, 1080, 1270 |
| ScaI | AGTACT | 1 cut(s) | 820 |
| SchI | GAGTC | 2 cut(s) | 566, 712 |
| ScrFI | CCNGG | 2 cut(s) | 1275, 1313 |
| SduI | GDGCHC | 2 cut(s) | 630, 911 |
| SexAI | ACCWGGT | 1 cut(s) | 1311 |
| SfaNI | GCATC | 6 cut(s) | 243, 319, 349, 669, 676, 1117 |
| SfuI | TTCGAA | 1 cut(s) | 76 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1261 |
| SmlI | CTYRAG | 5 cut(s) | 136, 275, 344, 720, 797 |
| SmoI | CTYRAG | 5 cut(s) | 136, 275, 344, 720, 797 |
| Sse9I | AATT | 6 cut(s) | 460, 770, 823, 836, 842, 1157 |
| SsiI | CCGC | 3 cut(s) | 980, 1040, 1118 |
| SspI | AATATT | 3 cut(s) | 572, 644, 832 |
| SspMI | CTAG | 1 cut(s) | 53 |
| StyD4I | CCNGG | 2 cut(s) | 1273, 1311 |
| StyI | CCWWGG | 1 cut(s) | 310 |
| TaaI | ACNGT | 4 cut(s) | 85, 185, 388, 1210 |
| TaiI | ACGT | 1 cut(s) | 61 |
| TaqI | TCGA | 2 cut(s) | 10, 76 |
| TasI | AATT | 6 cut(s) | 460, 770, 823, 836, 842, 1157 |
| TatI | WGTACW | 1 cut(s) | 818 |
| TfiI | GAWTC | 3 cut(s) | 289, 490, 582 |
| Tru1I | TTAA | 7 cut(s) | 276, 345, 410, 798, 854, 947, 1193 |
| Tru9I | TTAA | 7 cut(s) | 276, 345, 410, 798, 854, 947, 1193 |
| TscAI | CASTG | 2 cut(s) | 907, 1242 |
| TseFI | GTSAC | 1 cut(s) | 792 |
| TseI | GCWGC | 1 cut(s) | 689 |
| Tsp45I | GTSAC | 1 cut(s) | 792 |
| TspDTI | ATGAA | 7 cut(s) | 389, 408, 574, 591, 666, 697, 1218 |
| TspRI | CASTG | 2 cut(s) | 907, 1242 |
| Tth111I | GACNNNGTC | 1 cut(s) | 401 |
| Vha464I | CTTAAG | 3 cut(s) | 275, 344, 797 |
| VspI | ATTAAT | 1 cut(s) | 947 |
| XapI | RAATTY | 1 cut(s) | 1157 |
| XceI | RCATGY | 2 cut(s) | 926, 939 |
| XspI | CTAG | 1 cut(s) | 53 |
| ZrmI | AGTACT | 1 cut(s) | 820 |
| Zsp2I | ATGCAT | 1 cut(s) | 552 |