Retrotransposon gag protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 453 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 493 |
| AciI | CCGC | 1 cut(s) | 516 |
| AclWI | GGATC | 5 cut(s) | 38, 225, 475, 576, 629 |
| AfaI | GTAC | 2 cut(s) | 7, 187 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 167, 493 |
| AflII | CTTAAG | 1 cut(s) | 269 |
| AgsI | TTSAA | 2 cut(s) | 56, 528 |
| AjnI | CCWGG | 2 cut(s) | 463, 486 |
| AluBI | AGCT | 5 cut(s) | 35, 73, 268, 431, 590 |
| AluI | AGCT | 5 cut(s) | 35, 73, 268, 431, 590 |
| Alw26I | GTCTC | 1 cut(s) | 364 |
| AlwI | GGATC | 5 cut(s) | 38, 225, 475, 576, 629 |
| Ama87I | CYCGRG | 1 cut(s) | 361 |
| AspS9I | GGNCC | 1 cut(s) | 15 |
| AsuII | TTCGAA | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 361 |
| AvaII | GGWCC | 1 cut(s) | 15 |
| AxyI | CCTNAGG | 1 cut(s) | 48 |
| BaeGI | GKGCMC | 1 cut(s) | 557 |
| BccI | CCATC | 2 cut(s) | 127, 334 |
| BciT130I | CCWGG | 2 cut(s) | 465, 488 |
| BcoDI | GTCTC | 1 cut(s) | 364 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfrI | CTTAAG | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 2 cut(s) | 465, 488 |
| Bme18I | GGWCC | 1 cut(s) | 15 |
| BmeT110I | CYCGRG | 1 cut(s) | 361 |
| BmgT120I | GGNCC | 1 cut(s) | 15 |
| BmiI | GGNNCC | 2 cut(s) | 485, 501 |
| BmrFI | CCNGG | 2 cut(s) | 465, 488 |
| BmsI | GCATC | 4 cut(s) | 110, 243, 313, 343 |
| BpmI | CTGGAG | 1 cut(s) | 447 |
| Bpu10I | CCTNAGC | 1 cut(s) | 432 |
| Bpu14I | TTCGAA | 1 cut(s) | 67 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| Bsa29I | ATCGAT | 3 cut(s) | 104, 470, 671 |
| BsaI | GGTCTC | 1 cut(s) | 364 |
| BsaJI | CCNNGG | 1 cut(s) | 304 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 167, 493 |
| Bse21I | CCTNAGG | 1 cut(s) | 48 |
| BseBI | CCWGG | 2 cut(s) | 465, 488 |
| BseCI | ATCGAT | 3 cut(s) | 104, 470, 671 |
| BseDI | CCNNGG | 1 cut(s) | 304 |
| BseGI | GGATG | 3 cut(s) | 328, 391, 675 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 167, 493 |
| BseMII | CTCAG | 1 cut(s) | 39 |
| BseRI | GAGGAG | 2 cut(s) | 164, 404 |
| BseSI | GKGCMC | 1 cut(s) | 557 |
| Bsh1285I | CGRYCG | 1 cut(s) | 671 |
| BshVI | ATCGAT | 3 cut(s) | 104, 470, 671 |
| BsiEI | CGRYCG | 1 cut(s) | 671 |
| BsiHKCI | CYCGRG | 1 cut(s) | 361 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BslFI | GGGAC | 1 cut(s) | 549 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 167, 493 |
| BsmAI | GTCTC | 1 cut(s) | 364 |
| BsmFI | GGGAC | 1 cut(s) | 549 |
| BsmI | GAATGC | 1 cut(s) | 410 |
| Bso31I | GGTCTC | 1 cut(s) | 364 |
| BsoBI | CYCGRG | 1 cut(s) | 361 |
| Bsp119I | TTCGAA | 1 cut(s) | 67 |
| Bsp1286I | GDGCHC | 1 cut(s) | 557 |
| Bsp143I | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| Bsp19I | CCATGG | 1 cut(s) | 304 |
| BspACI | CCGC | 1 cut(s) | 516 |
| BspCNI | CTCAG | 1 cut(s) | 40 |
| BspDI | ATCGAT | 3 cut(s) | 104, 470, 671 |
| BspLI | GGNNCC | 2 cut(s) | 485, 501 |
| BspPI | GGATC | 5 cut(s) | 38, 225, 475, 576, 629 |
| BspT104I | TTCGAA | 1 cut(s) | 67 |
| BspTI | CTTAAG | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 1 cut(s) | 364 |
| BssECI | CCNNGG | 1 cut(s) | 304 |
| BssMI | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| BssT1I | CCWWGG | 1 cut(s) | 304 |
| Bst2UI | CCWGG | 2 cut(s) | 465, 488 |
| Bst4CI | ACNGT | 2 cut(s) | 185, 663 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstAFI | CTTAAG | 1 cut(s) | 269 |
| BstBI | TTCGAA | 1 cut(s) | 67 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 588 |
| BstDEI | CTNAG | 3 cut(s) | 48, 297, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 304 |
| BstF5I | GGATG | 3 cut(s) | 328, 391, 675 |
| BstKTI | GATC | 8 cut(s) | 31, 46, 220, 470, 571, 637, 671, 675 |
| BstMAI | GTCTC | 1 cut(s) | 364 |
| BstMBI | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| BstMCI | CGRYCG | 1 cut(s) | 671 |
| BstNI | CCWGG | 2 cut(s) | 465, 488 |
| BstNSI | RCATGY | 1 cut(s) | 542 |
| BstSCI | CCNGG | 2 cut(s) | 463, 486 |
| BstSLI | GKGCMC | 1 cut(s) | 557 |
| Bsu15I | ATCGAT | 3 cut(s) | 104, 470, 671 |
| Bsu36I | CCTNAGG | 1 cut(s) | 48 |
| BsuTUI | ATCGAT | 3 cut(s) | 104, 470, 671 |
| BtgI | CCRYGG | 1 cut(s) | 304 |
| BtsCI | GGATG | 3 cut(s) | 328, 391, 675 |
| BtsIMutI | CAGTG | 1 cut(s) | 659 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 588 |
| Cfr13I | GGNCC | 1 cut(s) | 15 |
| ClaI | ATCGAT | 3 cut(s) | 104, 470, 671 |
| CsiI | ACCWGGT | 1 cut(s) | 486 |
| Csp6I | GTAC | 2 cut(s) | 6, 186 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 117, 152 |
| CviAII | CATG | 6 cut(s) | 172, 280, 305, 350, 480, 539 |
| CviQI | GTAC | 2 cut(s) | 6, 186 |
| DdeI | CTNAG | 3 cut(s) | 48, 297, 432 |
| DpnI | GATC | 8 cut(s) | 30, 45, 219, 469, 570, 636, 670, 674 |
| DpnII | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 1 cut(s) | 304 |
| Eco31I | GGTCTC | 1 cut(s) | 364 |
| Eco47I | GGWCC | 1 cut(s) | 15 |
| Eco81I | CCTNAGG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 1 cut(s) | 361 |
| EcoRII | CCWGG | 2 cut(s) | 463, 486 |
| EcoT14I | CCWWGG | 1 cut(s) | 304 |
| ErhI | CCWWGG | 1 cut(s) | 304 |
| FaeI | CATG | 6 cut(s) | 175, 283, 308, 353, 483, 542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 564, 596 |
| FaqI | GGGAC | 1 cut(s) | 549 |
| FatI | CATG | 6 cut(s) | 171, 279, 304, 349, 479, 538 |
| FokI | GGATG | 3 cut(s) | 335, 398, 662 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GsuI | CTGGAG | 1 cut(s) | 447 |
| HapII | CCGG | 1 cut(s) | 276 |
| Hin1II | CATG | 6 cut(s) | 175, 283, 308, 353, 483, 542 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HinfI | GANTC | 1 cut(s) | 283 |
| HpaII | CCGG | 1 cut(s) | 276 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 339 |
| Hpy188III | TCNNGA | 3 cut(s) | 47, 363, 581 |
| HpyAV | CCTTC | 4 cut(s) | 6, 161, 248, 567 |
| HpyCH4III | ACNGT | 2 cut(s) | 185, 663 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 234, 251 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 297, 432 |
| Hsp92II | CATG | 6 cut(s) | 175, 283, 308, 353, 483, 542 |
| Kzo9I | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| LmnI | GCTCC | 2 cut(s) | 391, 505 |
| LpnPI | CCDG | 9 cut(s) | 60, 289, 387, 450, 473, 477, 494, 500, 596 |
| LweI | GCATC | 4 cut(s) | 110, 243, 313, 343 |
| MabI | ACCWGGT | 1 cut(s) | 486 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MalI | GATC | 8 cut(s) | 30, 45, 219, 469, 570, 636, 670, 674 |
| MboI | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| MboII | GAAGA | 3 cut(s) | 114, 158, 167 |
| MhlI | GDGCHC | 1 cut(s) | 557 |
| MluCI | AATT | 1 cut(s) | 454 |
| MmeI | TCCRAC | 1 cut(s) | 669 |
| MseI | TTAA | 3 cut(s) | 270, 563, 685 |
| MslI | CAYNNNNRTG | 1 cut(s) | 548 |
| MspCI | CTTAAG | 1 cut(s) | 269 |
| MspI | CCGG | 1 cut(s) | 276 |
| MspR9I | CCNGG | 2 cut(s) | 465, 488 |
| Mva1269I | GAATGC | 1 cut(s) | 410 |
| MvaI | CCWGG | 2 cut(s) | 465, 488 |
| NcoI | CCATGG | 1 cut(s) | 304 |
| NdeII | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| NlaIII | CATG | 6 cut(s) | 175, 283, 308, 353, 483, 542 |
| NlaIV | GGNNCC | 2 cut(s) | 485, 501 |
| NspI | RCATGY | 1 cut(s) | 542 |
| NspV | TTCGAA | 1 cut(s) | 67 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 64, 73 |
| PctI | GAATGC | 1 cut(s) | 410 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 493 |
| PfoI | TCCNGGA | 1 cut(s) | 463 |
| Ple19I | CGATCG | 1 cut(s) | 671 |
| PsiI | TTATAA | 1 cut(s) | 453 |
| Psp6I | CCWGG | 2 cut(s) | 463, 486 |
| PspGI | CCWGG | 2 cut(s) | 463, 486 |
| PspN4I | GGNNCC | 2 cut(s) | 485, 501 |
| PspPI | GGNCC | 1 cut(s) | 15 |
| PvuI | CGATCG | 1 cut(s) | 671 |
| RsaI | GTAC | 2 cut(s) | 7, 187 |
| RsaNI | GTAC | 2 cut(s) | 6, 186 |
| RseI | CAYNNNNRTG | 1 cut(s) | 548 |
| SaqAI | TTAA | 3 cut(s) | 270, 563, 685 |
| Sau3AI | GATC | 8 cut(s) | 28, 43, 217, 467, 568, 634, 668, 672 |
| Sau96I | GGNCC | 1 cut(s) | 15 |
| ScrFI | CCNGG | 2 cut(s) | 465, 488 |
| SduI | GDGCHC | 1 cut(s) | 557 |
| SexAI | ACCWGGT | 1 cut(s) | 486 |
| SfaNI | GCATC | 4 cut(s) | 110, 243, 313, 343 |
| SfuI | TTCGAA | 1 cut(s) | 67 |
| SinI | GGWCC | 1 cut(s) | 15 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 548 |
| SmlI | CTYRAG | 2 cut(s) | 269, 581 |
| SmoI | CTYRAG | 2 cut(s) | 269, 581 |
| Sse9I | AATT | 1 cut(s) | 454 |
| SsiI | CCGC | 1 cut(s) | 516 |
| SspMI | CTAG | 1 cut(s) | 32 |
| StyD4I | CCNGG | 2 cut(s) | 463, 486 |
| StyI | CCWWGG | 1 cut(s) | 304 |
| TaaI | ACNGT | 2 cut(s) | 185, 663 |
| TaqI | TCGA | 6 cut(s) | 10, 67, 76, 104, 470, 671 |
| TasI | AATT | 1 cut(s) | 454 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| Tru1I | TTAA | 3 cut(s) | 270, 563, 685 |
| Tru9I | TTAA | 3 cut(s) | 270, 563, 685 |
| TscAI | CASTG | 1 cut(s) | 666 |
| TspDTI | ATGAA | 2 cut(s) | 338, 488 |
| TspGWI | ACGGA | 1 cut(s) | 230 |
| TspRI | CASTG | 1 cut(s) | 666 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 493 |
| Vha464I | CTTAAG | 1 cut(s) | 269 |
| VpaK11BI | GGWCC | 1 cut(s) | 15 |
| XceI | RCATGY | 1 cut(s) | 542 |
| XspI | CTAG | 1 cut(s) | 32 |