transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 102 |
| AcoI | YGGCCR | 1 cut(s) | 334 |
| AgsI | TTSAA | 1 cut(s) | 325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 248 |
| AluBI | AGCT | 2 cut(s) | 65, 287 |
| AluI | AGCT | 2 cut(s) | 65, 287 |
| Alw21I | GWGCWC | 1 cut(s) | 60 |
| Alw26I | GTCTC | 2 cut(s) | 353, 389 |
| AlwI | GGATC | 1 cut(s) | 102 |
| AoxI | GGCC | 1 cut(s) | 334 |
| BalI | TGGCCA | 1 cut(s) | 336 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| Bbv12I | GWGCWC | 1 cut(s) | 60 |
| BccI | CCATC | 1 cut(s) | 345 |
| BcoDI | GTCTC | 2 cut(s) | 353, 389 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 248 |
| BmsI | GCATC | 1 cut(s) | 148 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 1 cut(s) | 329 |
| BseMII | CTCAG | 1 cut(s) | 384 |
| BseRI | GAGGAG | 1 cut(s) | 158 |
| BseYI | CCCAGC | 1 cut(s) | 107 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| BshFI | GGCC | 1 cut(s) | 336 |
| BsiHKAI | GWGCWC | 1 cut(s) | 60 |
| BslFI | GGGAC | 1 cut(s) | 255 |
| BsmAI | GTCTC | 2 cut(s) | 353, 389 |
| BsmBI | CGTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 1 cut(s) | 255 |
| BsmI | GAATGC | 1 cut(s) | 200 |
| BsnI | GGCC | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 1 cut(s) | 94 |
| BspANI | GGCC | 1 cut(s) | 336 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspPI | GGATC | 1 cut(s) | 102 |
| BssMI | GATC | 1 cut(s) | 94 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 33 |
| BstDEI | CTNAG | 2 cut(s) | 195, 393 |
| BstKTI | GATC | 1 cut(s) | 97 |
| BstMAI | GTCTC | 2 cut(s) | 353, 389 |
| BstMBI | GATC | 1 cut(s) | 94 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 33 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| BstX2I | RGATCY | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 94 |
| BsuRI | GGCC | 1 cut(s) | 336 |
| BtgZI | GCGATG | 1 cut(s) | 323 |
| CviAII | CATG | 3 cut(s) | 91, 206, 374 |
| CviJI | RGCY | 6 cut(s) | 65, 107, 112, 287, 336, 349 |
| CviKI_1 | RGCY | 6 cut(s) | 65, 107, 112, 287, 336, 349 |
| DdeI | CTNAG | 2 cut(s) | 195, 393 |
| DpnI | GATC | 1 cut(s) | 96 |
| DpnII | GATC | 1 cut(s) | 94 |
| DriI | GACNNNNNGTC | 1 cut(s) | 248 |
| EaeI | YGGCCR | 1 cut(s) | 334 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 248 |
| Esp3I | CGTCTC | 1 cut(s) | 353 |
| FaeI | CATG | 3 cut(s) | 94, 209, 377 |
| FaiI | YATR | 7 cut(s) | 10, 24, 92, 117, 207, 357, 375 |
| FaqI | GGGAC | 1 cut(s) | 255 |
| FatI | CATG | 3 cut(s) | 90, 205, 373 |
| FspBI | CTAG | 1 cut(s) | 98 |
| GsaI | CCCAGC | 1 cut(s) | 111 |
| HaeIII | GGCC | 1 cut(s) | 336 |
| Hin1II | CATG | 3 cut(s) | 94, 209, 377 |
| HindIII | AAGCTT | 1 cut(s) | 63 |
| HinfI | GANTC | 1 cut(s) | 217 |
| Hpy166II | GTNNAC | 1 cut(s) | 305 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| Hpy8I | GTNNAC | 1 cut(s) | 305 |
| HpyCH4IV | ACGT | 1 cut(s) | 362 |
| HpyCH4V | TGCA | 3 cut(s) | 127, 133, 292 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 33 |
| HpyF3I | CTNAG | 2 cut(s) | 195, 393 |
| HpySE526I | ACGT | 1 cut(s) | 362 |
| Hsp92II | CATG | 3 cut(s) | 94, 209, 377 |
| Kzo9I | GATC | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 370 |
| LpnPI | CCDG | 4 cut(s) | 57, 93, 297, 297 |
| LweI | GCATC | 1 cut(s) | 148 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeII | ACGT | 1 cut(s) | 362 |
| MaeIII | GTNAC | 1 cut(s) | 314 |
| MalI | GATC | 1 cut(s) | 96 |
| MboI | GATC | 1 cut(s) | 94 |
| MboII | GAAGA | 1 cut(s) | 238 |
| MfeI | CAATTG | 1 cut(s) | 128 |
| MflI | RGATCY | 1 cut(s) | 94 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MlsI | TGGCCA | 1 cut(s) | 336 |
| MluCI | AATT | 3 cut(s) | 15, 122, 128 |
| MluNI | TGGCCA | 1 cut(s) | 336 |
| MnlI | CCTC | 5 cut(s) | 97, 136, 263, 353, 376 |
| Mox20I | TGGCCA | 1 cut(s) | 336 |
| MscI | TGGCCA | 1 cut(s) | 336 |
| MseI | TTAA | 2 cut(s) | 87, 273 |
| Msp20I | TGGCCA | 1 cut(s) | 336 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MunI | CAATTG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 33 |
| NdeII | GATC | 1 cut(s) | 94 |
| NlaIII | CATG | 3 cut(s) | 94, 209, 377 |
| PctI | GAATGC | 1 cut(s) | 200 |
| PfeI | GAWTC | 1 cut(s) | 217 |
| PspFI | CCCAGC | 1 cut(s) | 107 |
| PsuI | RGATCY | 1 cut(s) | 94 |
| PvuII | CAGCTG | 1 cut(s) | 287 |
| SaqAI | TTAA | 2 cut(s) | 87, 273 |
| Sau3AI | GATC | 1 cut(s) | 94 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 6 cut(s) | 34, 46, 67, 289, 316, 365 |
| SfaNI | GCATC | 1 cut(s) | 148 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| Sse9I | AATT | 3 cut(s) | 15, 122, 128 |
| SspMI | CTAG | 1 cut(s) | 98 |
| TaiI | ACGT | 1 cut(s) | 365 |
| TaqI | TCGA | 1 cut(s) | 13 |
| TasI | AATT | 3 cut(s) | 15, 122, 128 |
| TfiI | GAWTC | 1 cut(s) | 217 |
| Tru1I | TTAA | 2 cut(s) | 87, 273 |
| Tru9I | TTAA | 2 cut(s) | 87, 273 |
| TspDTI | ATGAA | 1 cut(s) | 104 |
| XbaI | TCTAGA | 1 cut(s) | 97 |
| XspI | CTAG | 1 cut(s) | 98 |