protein kinase activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 213 - 309 | 1.4e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 346 - 443 | 2.3e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 370 - 473 | 7.8e-38 | RNase H-like domain found in reverse transcriptase |
| rve | PF00665 | 574 - 667 | 1.4e-16 | Integrase core domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 999 |
| AatII | GACGTC | 1 cut(s) | 1085 |
| Acc16I | TGCGCA | 1 cut(s) | 243 |
| Acc36I | ACCTGC | 2 cut(s) | 938, 1872 |
| Acc65I | GGTACC | 2 cut(s) | 610, 1313 |
| AccB1I | GGYRCC | 2 cut(s) | 610, 1313 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 892 |
| AccI | GTMKAC | 1 cut(s) | 465 |
| AclI | AACGTT | 1 cut(s) | 844 |
| AclWI | GGATC | 5 cut(s) | 25, 135, 584, 1914, 1927 |
| AcoI | YGGCCR | 1 cut(s) | 940 |
| AcsI | RAATTY | 4 cut(s) | 802, 1644, 2322, 2525 |
| AcuI | CTGAAG | 1 cut(s) | 1529 |
| AcvI | CACGTG | 1 cut(s) | 1619 |
| AcyI | GRCGYC | 2 cut(s) | 1082, 2553 |
| AfaI | GTAC | 4 cut(s) | 612, 712, 867, 1315 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 79, 553, 892, 1510 |
| AflII | CTTAAG | 1 cut(s) | 1067 |
| AgsI | TTSAA | 9 cut(s) | 346, 374, 457, 841, 899, 1351, 2233, 2458, 2479 |
| AhlI | ACTAGT | 1 cut(s) | 2006 |
| AjnI | CCWGG | 3 cut(s) | 414, 706, 2428 |
| AleI | CACNNNNGTG | 1 cut(s) | 584 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2379, 2411 |
| Alw21I | GWGCWC | 3 cut(s) | 1266, 1624, 2205 |
| Alw26I | GTCTC | 7 cut(s) | 385, 476, 547, 985, 1508, 2029, 2420 |
| AlwI | GGATC | 5 cut(s) | 25, 135, 584, 1914, 1927 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| AoxI | GGCC | 5 cut(s) | 150, 417, 631, 940, 1821 |
| ApeKI | GCWGC | 3 cut(s) | 1343, 1531, 2249 |
| ApoI | RAATTY | 4 cut(s) | 802, 1644, 2322, 2525 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 909, 941 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2228 |
| Asp718I | GGTACC | 2 cut(s) | 610, 1313 |
| AspA2I | CCTAGG | 1 cut(s) | 1666 |
| AspLEI | GCGC | 1 cut(s) | 244 |
| AspS9I | GGNCC | 7 cut(s) | 151, 412, 418, 1113, 1670, 1745, 2085 |
| AsuHPI | GGTGA | 5 cut(s) | 316, 598, 1988, 2142, 2473 |
| AsuII | TTCGAA | 1 cut(s) | 2365 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| AvaII | GGWCC | 5 cut(s) | 412, 1113, 1670, 1745, 2085 |
| AvrII | CCTAGG | 1 cut(s) | 1666 |
| BaeGI | GKGCMC | 2 cut(s) | 564, 1026 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 264, 297, 1305, 1338 |
| BalI | TGGCCA | 1 cut(s) | 942 |
| BamHI | GGATCC | 1 cut(s) | 1919 |
| BanI | GGYRCC | 2 cut(s) | 610, 1313 |
| BanII | GRGCYC | 1 cut(s) | 1266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 449, 481 |
| BbrPI | CACGTG | 1 cut(s) | 1619 |
| BbsI | GAAGAC | 3 cut(s) | 183, 2063, 2378 |
| Bbv12I | GWGCWC | 3 cut(s) | 1266, 1624, 2205 |
| BbvCI | CCTCAGC | 1 cut(s) | 2019 |
| BbvI | GCAGC | 3 cut(s) | 1355, 1543, 2261 |
| BccI | CCATC | 4 cut(s) | 1100, 1208, 1389, 1907 |
| BceAI | ACGGC | 3 cut(s) | 2505, 2624, 2656 |
| BciT130I | CCWGG | 3 cut(s) | 416, 708, 2430 |
| BciVI | GTATCC | 1 cut(s) | 265 |
| BcoDI | GTCTC | 7 cut(s) | 385, 476, 547, 985, 1508, 2029, 2420 |
| BcuI | ACTAGT | 1 cut(s) | 2006 |
| BfmI | CTRYAG | 1 cut(s) | 673 |
| BfrI | CTTAAG | 1 cut(s) | 1067 |
| BfuAI | ACCTGC | 2 cut(s) | 938, 1872 |
| BfuI | GTATCC | 1 cut(s) | 265 |
| BisI | GCNGC | 3 cut(s) | 1344, 1532, 2250 |
| BlnI | CCTAGG | 1 cut(s) | 1666 |
| BlsI | GCNGC | 3 cut(s) | 1345, 1533, 2251 |
| Bme1390I | CCNGG | 3 cut(s) | 416, 708, 2430 |
| Bme18I | GGWCC | 5 cut(s) | 412, 1113, 1670, 1745, 2085 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmgT120I | GGNCC | 7 cut(s) | 151, 412, 418, 1113, 1670, 1745, 2085 |
| BmiI | GGNNCC | 5 cut(s) | 420, 612, 1315, 1746, 1921 |
| BmrFI | CCNGG | 3 cut(s) | 416, 708, 2430 |
| BmrI | ACTGGG | 1 cut(s) | 542 |
| BmsI | GCATC | 7 cut(s) | 98, 404, 1129, 1219, 2092, 2236, 2293 |
| BmuI | ACTGGG | 1 cut(s) | 542 |
| BpiI | GAAGAC | 3 cut(s) | 183, 2063, 2378 |
| BpmI | CTGGAG | 4 cut(s) | 690, 848, 995, 1089 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2019 |
| Bpu14I | TTCGAA | 1 cut(s) | 2365 |
| BpuEI | CTTGAG | 6 cut(s) | 311, 410, 1198, 1307, 1492, 1975 |
| BsaAI | YACGTR | 1 cut(s) | 1619 |
| BsaHI | GRCGYC | 2 cut(s) | 1082, 2553 |
| BsaI | GGTCTC | 4 cut(s) | 476, 547, 985, 2029 |
| BsaJI | CCNNGG | 5 cut(s) | 937, 1382, 1559, 1666, 2428 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 79, 553, 892, 1510 |
| Bse1I | ACTGG | 4 cut(s) | 46, 548, 612, 2087 |
| BseBI | CCWGG | 3 cut(s) | 416, 708, 2430 |
| BseDI | CCNNGG | 5 cut(s) | 937, 1382, 1559, 1666, 2428 |
| BseGI | GGATG | 5 cut(s) | 238, 784, 1024, 2107, 2251 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 79, 553, 892, 1510 |
| BseMII | CTCAG | 1 cut(s) | 2010 |
| BseNI | ACTGG | 4 cut(s) | 46, 548, 612, 2087 |
| BseRI | GAGGAG | 3 cut(s) | 374, 1972, 2303 |
| BseSI | GKGCMC | 2 cut(s) | 564, 1026 |
| BseXI | GCAGC | 3 cut(s) | 1355, 1543, 2261 |
| BseYI | CCCAGC | 1 cut(s) | 2252 |
| BsgI | GTGCAG | 1 cut(s) | 492 |
| BshFI | GGCC | 5 cut(s) | 152, 419, 633, 942, 1823 |
| BshNI | GGYRCC | 2 cut(s) | 610, 1313 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1266, 1624, 2205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BslFI | GGGAC | 3 cut(s) | 488, 1758, 2400 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 79, 553, 892, 1510 |
| BsmAI | GTCTC | 7 cut(s) | 385, 476, 547, 985, 1508, 2029, 2420 |
| BsmBI | CGTCTC | 2 cut(s) | 385, 2420 |
| BsmFI | GGGAC | 3 cut(s) | 488, 1758, 2400 |
| BsmI | GAATGC | 4 cut(s) | 91, 598, 1896, 2345 |
| BsnI | GGCC | 5 cut(s) | 152, 419, 633, 942, 1823 |
| Bso31I | GGTCTC | 4 cut(s) | 476, 547, 985, 2029 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp119I | TTCGAA | 1 cut(s) | 2365 |
| Bsp1286I | GDGCHC | 5 cut(s) | 564, 1026, 1266, 1624, 2205 |
| Bsp143I | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| Bsp19I | CCATGG | 1 cut(s) | 1559 |
| BspANI | GGCC | 5 cut(s) | 152, 419, 633, 942, 1823 |
| BspCNI | CTCAG | 1 cut(s) | 2011 |
| BspHI | TCATGA | 2 cut(s) | 21, 205 |
| BspLI | GGNNCC | 5 cut(s) | 420, 612, 1315, 1746, 1921 |
| BspMI | ACCTGC | 2 cut(s) | 938, 1872 |
| BspPI | GGATC | 5 cut(s) | 25, 135, 584, 1914, 1927 |
| BspT104I | TTCGAA | 1 cut(s) | 2365 |
| BspT107I | GGYRCC | 2 cut(s) | 610, 1313 |
| BspTI | CTTAAG | 1 cut(s) | 1067 |
| BspTNI | GGTCTC | 4 cut(s) | 476, 547, 985, 2029 |
| BsrI | ACTGG | 4 cut(s) | 46, 548, 612, 2087 |
| BssECI | CCNNGG | 5 cut(s) | 937, 1382, 1559, 1666, 2428 |
| BssMI | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| BssNI | GRCGYC | 2 cut(s) | 1082, 2553 |
| BssT1I | CCWWGG | 4 cut(s) | 937, 1382, 1559, 1666 |
| Bst2UI | CCWGG | 3 cut(s) | 416, 708, 2430 |
| Bst4CI | ACNGT | 4 cut(s) | 583, 625, 1708, 2062 |
| Bst6I | CTCTTC | 5 cut(s) | 447, 522, 2408, 2429, 2542 |
| BstACI | GRCGYC | 2 cut(s) | 1082, 2553 |
| BstAFI | CTTAAG | 1 cut(s) | 1067 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2178 |
| BstBAI | YACGTR | 1 cut(s) | 1619 |
| BstBI | TTCGAA | 1 cut(s) | 2365 |
| BstC8I | GCNNGC | 2 cut(s) | 1785, 2016 |
| BstDEI | CTNAG | 5 cut(s) | 277, 981, 1842, 2019, 2340 |
| BstDSI | CCRYGG | 1 cut(s) | 1559 |
| BstF5I | GGATG | 5 cut(s) | 238, 784, 1024, 2107, 2251 |
| BstHHI | GCGC | 1 cut(s) | 244 |
| BstKTI | GATC | 7 cut(s) | 33, 130, 579, 1431, 1498, 1681, 1922 |
| BstMAI | GTCTC | 7 cut(s) | 385, 476, 547, 985, 1508, 2029, 2420 |
| BstMBI | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1160, 2111, 2178, 2216, 2645 |
| BstNI | CCWGG | 3 cut(s) | 416, 708, 2430 |
| BstSCI | CCNGG | 3 cut(s) | 414, 706, 2428 |
| BstSFI | CTRYAG | 1 cut(s) | 673 |
| BstSLI | GKGCMC | 2 cut(s) | 564, 1026 |
| BstV1I | GCAGC | 3 cut(s) | 1355, 1543, 2261 |
| BstV2I | GAAGAC | 3 cut(s) | 183, 2063, 2378 |
| BstX2I | RGATCY | 2 cut(s) | 30, 1919 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 41, 196, 1810 |
| BstYI | RGATCY | 2 cut(s) | 30, 1919 |
| BsuI | GTATCC | 1 cut(s) | 265 |
| BsuRI | GGCC | 5 cut(s) | 152, 419, 633, 942, 1823 |
| BtgI | CCRYGG | 1 cut(s) | 1559 |
| BtgZI | GCGATG | 1 cut(s) | 2456 |
| BtsCI | GGATG | 5 cut(s) | 238, 784, 1024, 2107, 2251 |
| BtsI | GCAGTG | 1 cut(s) | 1794 |
| BtsIMutI | CAGTG | 2 cut(s) | 579, 1794 |
| BveI | ACCTGC | 2 cut(s) | 938, 1872 |
| Cac8I | GCNNGC | 2 cut(s) | 1785, 2016 |
| CciI | TCATGA | 2 cut(s) | 21, 205 |
| CfoI | GCGC | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 7 cut(s) | 151, 412, 418, 1113, 1670, 1745, 2085 |
| CseI | GACGC | 1 cut(s) | 2542 |
| Csp6I | GTAC | 4 cut(s) | 611, 711, 866, 1314 |
| CviQI | GTAC | 4 cut(s) | 611, 711, 866, 1314 |
| DdeI | CTNAG | 5 cut(s) | 277, 981, 1842, 2019, 2340 |
| DpnI | GATC | 7 cut(s) | 32, 129, 578, 1430, 1497, 1680, 1921 |
| DpnII | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 999 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 999 |
| EaeI | YGGCCR | 1 cut(s) | 940 |
| Eam1104I | CTCTTC | 5 cut(s) | 447, 522, 2408, 2429, 2542 |
| EarI | CTCTTC | 5 cut(s) | 447, 522, 2408, 2429, 2542 |
| Ecl136II | GAGCTC | 1 cut(s) | 1264 |
| Eco130I | CCWWGG | 4 cut(s) | 937, 1382, 1559, 1666 |
| Eco24I | GRGCYC | 1 cut(s) | 1266 |
| Eco31I | GGTCTC | 4 cut(s) | 476, 547, 985, 2029 |
| Eco47I | GGWCC | 5 cut(s) | 412, 1113, 1670, 1745, 2085 |
| Eco53kI | GAGCTC | 1 cut(s) | 1264 |
| Eco57I | CTGAAG | 1 cut(s) | 1529 |
| Eco72I | CACGTG | 1 cut(s) | 1619 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| EcoICRI | GAGCTC | 1 cut(s) | 1264 |
| EcoO109I | RGGNCCY | 3 cut(s) | 418, 1670, 1745 |
| EcoRII | CCWGG | 3 cut(s) | 414, 706, 2428 |
| EcoT14I | CCWWGG | 4 cut(s) | 937, 1382, 1559, 1666 |
| EcoT22I | ATGCAT | 2 cut(s) | 91, 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 1266 |
| ErhI | CCWWGG | 4 cut(s) | 937, 1382, 1559, 1666 |
| Esp3I | CGTCTC | 2 cut(s) | 385, 2420 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 470, 502, 1251, 1283, 2359, 2391 |
| FaqI | GGGAC | 3 cut(s) | 488, 1758, 2400 |
| FblI | GTMKAC | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 3 cut(s) | 1344, 1532, 2250 |
| FokI | GGATG | 5 cut(s) | 245, 791, 1031, 2114, 2258 |
| FriOI | GRGCYC | 1 cut(s) | 1266 |
| Fsp4HI | GCNGC | 3 cut(s) | 1344, 1532, 2250 |
| FspI | TGCGCA | 1 cut(s) | 243 |
| GlaI | GCGC | 1 cut(s) | 243 |
| GluI | GCNGC | 3 cut(s) | 1344, 1532, 2250 |
| GsaI | CCCAGC | 1 cut(s) | 2256 |
| GsuI | CTGGAG | 4 cut(s) | 690, 848, 995, 1089 |
| HaeIII | GGCC | 5 cut(s) | 152, 419, 633, 942, 1823 |
| HgaI | GACGC | 1 cut(s) | 2542 |
| HhaI | GCGC | 1 cut(s) | 244 |
| Hin1I | GRCGYC | 2 cut(s) | 1082, 2553 |
| Hin6I | GCGC | 1 cut(s) | 242 |
| HinP1I | GCGC | 1 cut(s) | 242 |
| HincII | GTYRAC | 2 cut(s) | 1004, 1080 |
| HindII | GTYRAC | 2 cut(s) | 1004, 1080 |
| HindIII | AAGCTT | 3 cut(s) | 1053, 1064, 2208 |
| HinfI | GANTC | 8 cut(s) | 321, 517, 1219, 1399, 1474, 1600, 1838, 2362 |
| HphI | GGTGA | 5 cut(s) | 316, 598, 1988, 2142, 2473 |
| Hpy166II | GTNNAC | 7 cut(s) | 466, 1004, 1080, 1556, 1579, 1792, 2065 |
| Hpy188I | TCNGA | 9 cut(s) | 334, 692, 720, 745, 1147, 1394, 1938, 2037, 2566 |
| Hpy8I | GTNNAC | 7 cut(s) | 466, 1004, 1080, 1556, 1579, 1792, 2065 |
| HpyCH4III | ACNGT | 4 cut(s) | 583, 625, 1708, 2062 |
| HpyCH4IV | ACGT | 7 cut(s) | 378, 679, 713, 844, 1082, 1455, 1618 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1160, 2111, 2178, 2216, 2645 |
| HpyF3I | CTNAG | 5 cut(s) | 277, 981, 1842, 2019, 2340 |
| HpySE526I | ACGT | 7 cut(s) | 378, 679, 713, 844, 1082, 1455, 1618 |
| Hsp92I | GRCGYC | 2 cut(s) | 1082, 2553 |
| HspAI | GCGC | 1 cut(s) | 242 |
| KpnI | GGTACC | 2 cut(s) | 614, 1317 |
| Kzo9I | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| LmnI | GCTCC | 5 cut(s) | 54, 709, 1160, 1269, 2200 |
| Lsp1109I | GCAGC | 3 cut(s) | 1355, 1543, 2261 |
| LweI | GCATC | 7 cut(s) | 98, 404, 1129, 1219, 2092, 2236, 2293 |
| MaeII | ACGT | 7 cut(s) | 378, 679, 713, 844, 1082, 1455, 1618 |
| MalI | GATC | 7 cut(s) | 32, 129, 578, 1430, 1497, 1680, 1921 |
| MboI | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| MfeI | CAATTG | 1 cut(s) | 2273 |
| MflI | RGATCY | 2 cut(s) | 30, 1919 |
| MhlI | GDGCHC | 5 cut(s) | 564, 1026, 1266, 1624, 2205 |
| MlsI | TGGCCA | 1 cut(s) | 942 |
| MluNI | TGGCCA | 1 cut(s) | 942 |
| MlyI | GAGTC | 5 cut(s) | 330, 511, 1213, 1483, 1832 |
| MmeI | TCCRAC | 3 cut(s) | 177, 1138, 2178 |
| Mox20I | TGGCCA | 1 cut(s) | 942 |
| Mph1103I | ATGCAT | 2 cut(s) | 91, 267 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2228 |
| MscI | TGGCCA | 1 cut(s) | 942 |
| MseI | TTAA | 7 cut(s) | 819, 870, 1068, 1224, 1691, 2040, 2571 |
| MslI | CAYNNNNRTG | 4 cut(s) | 584, 1706, 2144, 2240 |
| Msp20I | TGGCCA | 1 cut(s) | 942 |
| MspA1I | CMGCKG | 1 cut(s) | 2252 |
| MspCI | CTTAAG | 1 cut(s) | 1067 |
| MspR9I | CCNGG | 3 cut(s) | 416, 708, 2430 |
| MunI | CAATTG | 1 cut(s) | 2273 |
| Mva1269I | GAATGC | 4 cut(s) | 91, 598, 1896, 2345 |
| MvaI | CCWGG | 3 cut(s) | 416, 708, 2430 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1160, 2111, 2178, 2216, 2645 |
| NcoI | CCATGG | 1 cut(s) | 1559 |
| NdeII | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| NlaIV | GGNNCC | 5 cut(s) | 420, 612, 1315, 1746, 1921 |
| NmuCI | GTSAC | 6 cut(s) | 280, 322, 625, 1614, 1969, 2148 |
| NsbI | TGCGCA | 1 cut(s) | 243 |
| NsiI | ATGCAT | 2 cut(s) | 91, 267 |
| NspV | TTCGAA | 1 cut(s) | 2365 |
| OliI | CACNNNNGTG | 1 cut(s) | 584 |
| PaeR7I | CTCGAG | 1 cut(s) | 428 |
| PagI | TCATGA | 2 cut(s) | 21, 205 |
| PctI | GAATGC | 4 cut(s) | 91, 598, 1896, 2345 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2228 |
| PfeI | GAWTC | 3 cut(s) | 1399, 1600, 2362 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 892 |
| PkrI | GCNGC | 3 cut(s) | 1345, 1533, 2251 |
| PleI | GAGTC | 5 cut(s) | 329, 511, 1213, 1482, 1832 |
| PmaCI | CACGTG | 1 cut(s) | 1619 |
| PmlI | CACGTG | 1 cut(s) | 1619 |
| PpsI | GAGTC | 5 cut(s) | 329, 511, 1213, 1482, 1832 |
| Ppu21I | YACGTR | 1 cut(s) | 1619 |
| PpuMI | RGGWCCY | 2 cut(s) | 1670, 1745 |
| Psp124BI | GAGCTC | 1 cut(s) | 1266 |
| Psp1406I | AACGTT | 1 cut(s) | 844 |
| Psp5II | RGGWCCY | 2 cut(s) | 1670, 1745 |
| Psp6I | CCWGG | 3 cut(s) | 414, 706, 2428 |
| PspCI | CACGTG | 1 cut(s) | 1619 |
| PspFI | CCCAGC | 1 cut(s) | 2252 |
| PspGI | CCWGG | 3 cut(s) | 414, 706, 2428 |
| PspN4I | GGNNCC | 5 cut(s) | 420, 612, 1315, 1746, 1921 |
| PspPI | GGNCC | 7 cut(s) | 151, 412, 418, 1113, 1670, 1745, 2085 |
| PspPPI | RGGWCCY | 2 cut(s) | 1670, 1745 |
| PspXI | VCTCGAGB | 1 cut(s) | 428 |
| PsuI | RGATCY | 2 cut(s) | 30, 1919 |
| PvuII | CAGCTG | 1 cut(s) | 2252 |
| RsaI | GTAC | 4 cut(s) | 612, 712, 867, 1315 |
| RsaNI | GTAC | 4 cut(s) | 611, 711, 866, 1314 |
| RseI | CAYNNNNRTG | 4 cut(s) | 584, 1706, 2144, 2240 |
| SacI | GAGCTC | 1 cut(s) | 1266 |
| SaqAI | TTAA | 7 cut(s) | 819, 870, 1068, 1224, 1691, 2040, 2571 |
| SatI | GCNGC | 3 cut(s) | 1344, 1532, 2250 |
| Sau3AI | GATC | 7 cut(s) | 30, 127, 576, 1428, 1495, 1678, 1919 |
| Sau96I | GGNCC | 7 cut(s) | 151, 412, 418, 1113, 1670, 1745, 2085 |
| SchI | GAGTC | 5 cut(s) | 330, 511, 1213, 1483, 1832 |
| ScrFI | CCNGG | 3 cut(s) | 416, 708, 2430 |
| SduI | GDGCHC | 5 cut(s) | 564, 1026, 1266, 1624, 2205 |
| SfaNI | GCATC | 7 cut(s) | 98, 404, 1129, 1219, 2092, 2236, 2293 |
| SfcI | CTRYAG | 1 cut(s) | 673 |
| Sfr274I | CTCGAG | 1 cut(s) | 428 |
| SfuI | TTCGAA | 1 cut(s) | 2365 |
| SinI | GGWCC | 5 cut(s) | 412, 1113, 1670, 1745, 2085 |
| SlaI | CTCGAG | 1 cut(s) | 428 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 584, 1706, 2144, 2240 |
| SmlI | CTYRAG | 8 cut(s) | 290, 389, 428, 1067, 1213, 1286, 1471, 1954 |
| SmoI | CTYRAG | 8 cut(s) | 290, 389, 428, 1067, 1213, 1286, 1471, 1954 |
| SpeI | ACTAGT | 1 cut(s) | 2006 |
| SspI | AATATT | 1 cut(s) | 1716 |
| SstI | GAGCTC | 1 cut(s) | 1266 |
| StyD4I | CCNGG | 3 cut(s) | 414, 706, 2428 |
| StyI | CCWWGG | 4 cut(s) | 937, 1382, 1559, 1666 |
| TaaI | ACNGT | 4 cut(s) | 583, 625, 1708, 2062 |
| TaiI | ACGT | 7 cut(s) | 381, 682, 716, 847, 1085, 1458, 1621 |
| TaqI | TCGA | 4 cut(s) | 429, 989, 2158, 2365 |
| TatI | WGTACW | 1 cut(s) | 865 |
| TfiI | GAWTC | 3 cut(s) | 1399, 1600, 2362 |
| Tru1I | TTAA | 7 cut(s) | 819, 870, 1068, 1224, 1691, 2040, 2571 |
| Tru9I | TTAA | 7 cut(s) | 819, 870, 1068, 1224, 1691, 2040, 2571 |
| TscAI | CASTG | 2 cut(s) | 586, 1794 |
| TseFI | GTSAC | 6 cut(s) | 280, 322, 625, 1614, 1969, 2148 |
| TseI | GCWGC | 3 cut(s) | 1343, 1531, 2249 |
| Tsp45I | GTSAC | 6 cut(s) | 280, 322, 625, 1614, 1969, 2148 |
| TspRI | CASTG | 2 cut(s) | 586, 1794 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 892 |
| Vha464I | CTTAAG | 1 cut(s) | 1067 |
| VpaK11BI | GGWCC | 5 cut(s) | 412, 1113, 1670, 1745, 2085 |
| XapI | RAATTY | 4 cut(s) | 802, 1644, 2322, 2525 |
| XbaI | TCTAGA | 1 cut(s) | 1592 |
| XhoI | CTCGAG | 1 cut(s) | 428 |
| XmaJI | CCTAGG | 1 cut(s) | 1666 |
| XmiI | GTMKAC | 1 cut(s) | 465 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2228 |
| ZraI | GACGTC | 1 cut(s) | 1083 |
| Zsp2I | ATGCAT | 2 cut(s) | 91, 267 |