transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 148 - 240 | 8.5e-21 | Retrotransposon gag protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 1465, 1827 |
| Acc36I | ACCTGC | 4 cut(s) | 1767, 2203, 2897, 2944 |
| AccB1I | GGYRCC | 2 cut(s) | 854, 1637 |
| AccI | GTMKAC | 3 cut(s) | 649, 2302, 2848 |
| AciI | CCGC | 4 cut(s) | 410, 413, 1357, 1968 |
| AclWI | GGATC | 6 cut(s) | 861, 1810, 2000, 2374, 2495, 2508 |
| AcoI | YGGCCR | 1 cut(s) | 1228 |
| AcsI | RAATTY | 9 cut(s) | 124, 545, 571, 817, 1084, 1661, 1892, 1925, 2086 |
| AcuI | CTGAAG | 2 cut(s) | 372, 804 |
| AcyI | GRCGYC | 2 cut(s) | 1462, 1824 |
| AdeI | CACNNNGTG | 1 cut(s) | 2790 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 248, 850, 1075, 2000 |
| AflII | CTTAAG | 2 cut(s) | 224, 2311 |
| AflIII | ACRYGT | 1 cut(s) | 1237 |
| AgeI | ACCGGT | 1 cut(s) | 2668 |
| AjiI | CACGTC | 1 cut(s) | 1238 |
| AjnI | CCWGG | 2 cut(s) | 1183, 1456 |
| AleI | CACNNNNGTG | 1 cut(s) | 1760 |
| Alw21I | GWGCWC | 3 cut(s) | 1164, 1913, 2062 |
| Alw26I | GTCTC | 3 cut(s) | 82, 834, 2646 |
| Alw44I | GTGCAC | 1 cut(s) | 1909 |
| AlwI | GGATC | 6 cut(s) | 861, 1810, 2000, 2374, 2495, 2508 |
| Ama87I | CYCGRG | 1 cut(s) | 2600 |
| AoxI | GGCC | 1 cut(s) | 1228 |
| ApaLI | GTGCAC | 1 cut(s) | 1909 |
| ApeKI | GCWGC | 8 cut(s) | 62, 215, 254, 530, 980, 1099, 1219, 1473 |
| ApoI | RAATTY | 9 cut(s) | 124, 545, 571, 817, 1084, 1661, 1892, 1925, 2086 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1688, 1720 |
| AsiGI | ACCGGT | 1 cut(s) | 2668 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 545 |
| AspLEI | GCGC | 2 cut(s) | 1416, 2599 |
| AsuC2I | CCSGG | 2 cut(s) | 243, 2010 |
| AsuII | TTCGAA | 1 cut(s) | 320 |
| AvaI | CYCGRG | 1 cut(s) | 2600 |
| AxyI | CCTNAGG | 2 cut(s) | 1491, 1611 |
| BaeGI | GKGCMC | 1 cut(s) | 1913 |
| BalI | TGGCCA | 1 cut(s) | 1230 |
| BamHI | GGATCC | 1 cut(s) | 2500 |
| BanI | GGYRCC | 2 cut(s) | 854, 1637 |
| BauI | CACGAG | 1 cut(s) | 103 |
| BbsI | GAAGAC | 4 cut(s) | 360, 1068, 1457, 1819 |
| Bbv12I | GWGCWC | 3 cut(s) | 1164, 1913, 2062 |
| BbvI | GCAGC | 8 cut(s) | 74, 202, 266, 517, 967, 1111, 1231, 1485 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1928, 1962 |
| BciT130I | CCWGG | 2 cut(s) | 1185, 1458 |
| BciVI | GTATCC | 1 cut(s) | 2796 |
| BclI | TGATCA | 3 cut(s) | 43, 1866, 2041 |
| BcnI | CCSGG | 2 cut(s) | 243, 2010 |
| BcoDI | GTCTC | 3 cut(s) | 82, 834, 2646 |
| BfaI | CTAG | 6 cut(s) | 945, 1634, 1689, 1773, 1820, 2184 |
| BfmI | CTRYAG | 1 cut(s) | 92 |
| BfoI | RGCGCY | 2 cut(s) | 1417, 2600 |
| BfrI | CTTAAG | 2 cut(s) | 224, 2311 |
| BfuAI | ACCTGC | 4 cut(s) | 1767, 2203, 2897, 2944 |
| BfuI | GTATCC | 1 cut(s) | 2796 |
| BisI | GCNGC | 9 cut(s) | 63, 216, 255, 411, 531, 981, 1100, 1220, 1474 |
| BlsI | GCNGC | 9 cut(s) | 64, 217, 256, 412, 532, 982, 1101, 1221, 1475 |
| BmcAI | AGTACT | 2 cut(s) | 701, 2486 |
| Bme1390I | CCNGG | 4 cut(s) | 243, 1185, 1458, 2010 |
| BmeT110I | CYCGRG | 1 cut(s) | 2600 |
| BmgBI | CACGTC | 1 cut(s) | 1238 |
| BmiI | GGNNCC | 7 cut(s) | 856, 895, 1260, 1617, 1639, 1936, 2502 |
| BmrFI | CCNGG | 4 cut(s) | 243, 1185, 1458, 2010 |
| BmrI | ACTGGG | 1 cut(s) | 2151 |
| BmsI | GCATC | 5 cut(s) | 992, 1293, 1534, 2262, 2893 |
| BmuI | ACTGGG | 1 cut(s) | 2151 |
| BpiI | GAAGAC | 4 cut(s) | 360, 1068, 1457, 1819 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1649, 1681 |
| BpmI | CTGGAG | 3 cut(s) | 798, 1245, 2391 |
| Bpu10I | CCTNAGC | 3 cut(s) | 789, 1139, 2625 |
| Bpu14I | TTCGAA | 1 cut(s) | 320 |
| BpuEI | CTTGAG | 4 cut(s) | 972, 1431, 1883, 2390 |
| BpuMI | CCSGG | 2 cut(s) | 243, 2010 |
| Bsa29I | ATCGAT | 1 cut(s) | 2167 |
| BsaHI | GRCGYC | 2 cut(s) | 1462, 1824 |
| BsaI | GGTCTC | 1 cut(s) | 834 |
| BsaJI | CCNNGG | 2 cut(s) | 1456, 1722 |
| BsaWI | WCCGGW | 2 cut(s) | 2557, 2668 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 248, 850, 1075, 2000 |
| Bse118I | RCCGGY | 1 cut(s) | 2668 |
| Bse1I | ACTGG | 5 cut(s) | 171, 781, 1553, 2146, 2383 |
| Bse21I | CCTNAGG | 2 cut(s) | 1491, 1611 |
| Bse3DI | GCAATG | 2 cut(s) | 930, 1521 |
| BseBI | CCWGG | 2 cut(s) | 1185, 1458 |
| BseCI | ATCGAT | 1 cut(s) | 2167 |
| BseDI | CCNNGG | 2 cut(s) | 1456, 1722 |
| BseGI | GGATG | 6 cut(s) | 424, 1129, 1219, 1549, 1867, 2756 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 248, 850, 1075, 2000 |
| BseMI | GCAATG | 2 cut(s) | 930, 1521 |
| BseMII | CTCAG | 6 cut(s) | 120, 1280, 1394, 1895, 2271, 2616 |
| BseNI | ACTGG | 5 cut(s) | 171, 781, 1553, 2146, 2383 |
| BseRI | GAGGAG | 1 cut(s) | 2828 |
| BseSI | GKGCMC | 1 cut(s) | 1913 |
| BseXI | GCAGC | 8 cut(s) | 74, 202, 266, 517, 967, 1111, 1231, 1485 |
| BseYI | CCCAGC | 1 cut(s) | 1469 |
| BsgI | GTGCAG | 6 cut(s) | 273, 412, 1066, 2231, 2489, 2972 |
| BshFI | GGCC | 1 cut(s) | 1230 |
| BshNI | GGYRCC | 2 cut(s) | 854, 1637 |
| BshTI | ACCGGT | 1 cut(s) | 2668 |
| BshVI | ATCGAT | 1 cut(s) | 2167 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1164, 1913, 2062 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2600 |
| BsiSI | CCGG | 4 cut(s) | 242, 2009, 2558, 2669 |
| BslFI | GGGAC | 3 cut(s) | 530, 1716, 2025 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 248, 850, 1075, 2000 |
| BsmAI | GTCTC | 3 cut(s) | 82, 834, 2646 |
| BsmBI | CGTCTC | 1 cut(s) | 2646 |
| BsmFI | GGGAC | 3 cut(s) | 530, 1716, 2025 |
| BsmI | GAATGC | 2 cut(s) | 880, 1687 |
| BsnI | GGCC | 1 cut(s) | 1230 |
| Bso31I | GGTCTC | 1 cut(s) | 834 |
| BsoBI | CYCGRG | 1 cut(s) | 2600 |
| Bsp119I | TTCGAA | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1164, 1913, 2062 |
| BspACI | CCGC | 4 cut(s) | 410, 413, 1357, 1968 |
| BspANI | GGCC | 1 cut(s) | 1230 |
| BspCNI | CTCAG | 6 cut(s) | 121, 1279, 1393, 1894, 2272, 2617 |
| BspDI | ATCGAT | 1 cut(s) | 2167 |
| BspLI | GGNNCC | 7 cut(s) | 856, 895, 1260, 1617, 1639, 1936, 2502 |
| BspMI | ACCTGC | 4 cut(s) | 1767, 2203, 2897, 2944 |
| BspPI | GGATC | 6 cut(s) | 861, 1810, 2000, 2374, 2495, 2508 |
| BspQI | GCTCTTC | 3 cut(s) | 165, 1578, 2067 |
| BspT104I | TTCGAA | 1 cut(s) | 320 |
| BspT107I | GGYRCC | 2 cut(s) | 854, 1637 |
| BspTI | CTTAAG | 2 cut(s) | 224, 2311 |
| BspTNI | GGTCTC | 1 cut(s) | 834 |
| BsrDI | GCAATG | 2 cut(s) | 930, 1521 |
| BsrFI | RCCGGY | 1 cut(s) | 2668 |
| BsrI | ACTGG | 5 cut(s) | 171, 781, 1553, 2146, 2383 |
| BssAI | RCCGGY | 1 cut(s) | 2668 |
| BssECI | CCNNGG | 2 cut(s) | 1456, 1722 |
| BssNI | GRCGYC | 2 cut(s) | 1462, 1824 |
| BssSI | CACGAG | 1 cut(s) | 103 |
| Bst2BI | CACGAG | 1 cut(s) | 103 |
| Bst2UI | CCWGG | 2 cut(s) | 1185, 1458 |
| Bst6I | CTCTTC | 7 cut(s) | 165, 899, 1068, 1485, 1578, 2067, 2559 |
| BstACI | GRCGYC | 2 cut(s) | 1462, 1824 |
| BstAFI | CTTAAG | 2 cut(s) | 224, 2311 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 977, 1606 |
| BstBI | TTCGAA | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 4 cut(s) | 468, 859, 2577, 2742 |
| BstDSI | CCRYGG | 1 cut(s) | 1722 |
| BstF5I | GGATG | 6 cut(s) | 424, 1129, 1219, 1549, 1867, 2756 |
| BstH2I | RGCGCY | 2 cut(s) | 1417, 2600 |
| BstHHI | GCGC | 2 cut(s) | 1416, 2599 |
| BstMAI | GTCTC | 3 cut(s) | 82, 834, 2646 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 941, 977, 1149, 1422, 1606, 1615 |
| BstNI | CCWGG | 2 cut(s) | 1185, 1458 |
| BstSCI | CCNGG | 4 cut(s) | 241, 1183, 1456, 2008 |
| BstSFI | CTRYAG | 1 cut(s) | 92 |
| BstSLI | GKGCMC | 1 cut(s) | 1913 |
| BstV1I | GCAGC | 8 cut(s) | 74, 202, 266, 517, 967, 1111, 1231, 1485 |
| BstV2I | GAAGAC | 4 cut(s) | 360, 1068, 1457, 1819 |
| BstX2I | RGATCY | 4 cut(s) | 866, 1815, 2379, 2500 |
| BstYI | RGATCY | 4 cut(s) | 866, 1815, 2379, 2500 |
| Bsu15I | ATCGAT | 1 cut(s) | 2167 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1491, 1611 |
| BsuI | GTATCC | 1 cut(s) | 2796 |
| BsuRI | GGCC | 1 cut(s) | 1230 |
| BsuTUI | ATCGAT | 1 cut(s) | 2167 |
| BtgI | CCRYGG | 1 cut(s) | 1722 |
| BtrI | CACGTC | 1 cut(s) | 1238 |
| BtsCI | GGATG | 6 cut(s) | 424, 1129, 1219, 1549, 1867, 2756 |
| BtsI | GCAGTG | 1 cut(s) | 1354 |
| BtsIMutI | CAGTG | 6 cut(s) | 32, 118, 386, 1354, 1560, 2988 |
| BveI | ACCTGC | 4 cut(s) | 1767, 2203, 2897, 2944 |
| Cac8I | GCNNGC | 4 cut(s) | 468, 859, 2577, 2742 |
| CfoI | GCGC | 2 cut(s) | 1416, 2599 |
| Cfr10I | RCCGGY | 1 cut(s) | 2668 |
| ClaI | ATCGAT | 1 cut(s) | 2167 |
| CspAI | ACCGGT | 1 cut(s) | 2668 |
| DraI | TTTAAA | 1 cut(s) | 576 |
| DraIII | CACNNNGTG | 1 cut(s) | 2790 |
| EaeI | YGGCCR | 1 cut(s) | 1228 |
| Eam1104I | CTCTTC | 7 cut(s) | 165, 899, 1068, 1485, 1578, 2067, 2559 |
| EarI | CTCTTC | 7 cut(s) | 165, 899, 1068, 1485, 1578, 2067, 2559 |
| EciI | GGCGGA | 1 cut(s) | 1346 |
| Eco31I | GGTCTC | 1 cut(s) | 834 |
| Eco32I | GATATC | 1 cut(s) | 2767 |
| Eco57I | CTGAAG | 2 cut(s) | 372, 804 |
| Eco81I | CCTNAGG | 2 cut(s) | 1491, 1611 |
| Eco88I | CYCGRG | 1 cut(s) | 2600 |
| EcoRI | GAATTC | 4 cut(s) | 124, 545, 817, 1661 |
| EcoRII | CCWGG | 2 cut(s) | 1183, 1456 |
| EcoRV | GATATC | 1 cut(s) | 2767 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| Esp3I | CGTCTC | 1 cut(s) | 2646 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 218, 250, 354, 386, 2337, 2369 |
| FaqI | GGGAC | 3 cut(s) | 530, 1716, 2025 |
| FbaI | TGATCA | 3 cut(s) | 43, 1866, 2041 |
| FblI | GTMKAC | 3 cut(s) | 649, 2302, 2848 |
| Fnu4HI | GCNGC | 9 cut(s) | 63, 216, 255, 411, 531, 981, 1100, 1220, 1474 |
| FokI | GGATG | 6 cut(s) | 431, 1116, 1226, 1556, 1874, 2763 |
| Fsp4HI | GCNGC | 9 cut(s) | 63, 216, 255, 411, 531, 981, 1100, 1220, 1474 |
| FspBI | CTAG | 6 cut(s) | 945, 1634, 1689, 1773, 1820, 2184 |
| GlaI | GCGC | 2 cut(s) | 1415, 2598 |
| GluI | GCNGC | 9 cut(s) | 63, 216, 255, 411, 531, 981, 1100, 1220, 1474 |
| GsaI | CCCAGC | 1 cut(s) | 1473 |
| GsuI | CTGGAG | 3 cut(s) | 798, 1245, 2391 |
| HaeII | RGCGCY | 2 cut(s) | 1417, 2600 |
| HaeIII | GGCC | 1 cut(s) | 1230 |
| HapII | CCGG | 4 cut(s) | 242, 2009, 2558, 2669 |
| HhaI | GCGC | 2 cut(s) | 1416, 2599 |
| Hin1I | GRCGYC | 2 cut(s) | 1462, 1824 |
| Hin6I | GCGC | 2 cut(s) | 1414, 2597 |
| HinP1I | GCGC | 2 cut(s) | 1414, 2597 |
| HincII | GTYRAC | 3 cut(s) | 1453, 1499, 2849 |
| HindII | GTYRAC | 3 cut(s) | 1453, 1499, 2849 |
| HpaII | CCGG | 4 cut(s) | 242, 2009, 2558, 2669 |
| Hpy188III | TCNNGA | 9 cut(s) | 47, 822, 837, 1561, 1707, 1831, 2066, 2878, 2973 |
| Hpy99I | CGWCG | 1 cut(s) | 2850 |
| HpyCH4IV | ACGT | 6 cut(s) | 1237, 1462, 1824, 2014, 2571, 2845 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 941, 977, 1149, 1422, 1606, 1615 |
| HpySE526I | ACGT | 6 cut(s) | 1237, 1462, 1824, 2014, 2571, 2845 |
| Hsp92I | GRCGYC | 2 cut(s) | 1462, 1824 |
| HspAI | GCGC | 2 cut(s) | 1414, 2597 |
| Ksp22I | TGATCA | 3 cut(s) | 43, 1866, 2041 |
| LguI | GCTCTTC | 3 cut(s) | 165, 1578, 2067 |
| LmnI | GCTCC | 5 cut(s) | 779, 893, 1264, 1615, 2584 |
| Lsp1109I | GCAGC | 8 cut(s) | 74, 202, 266, 517, 967, 1111, 1231, 1485 |
| LweI | GCATC | 5 cut(s) | 992, 1293, 1534, 2262, 2893 |
| MaeI | CTAG | 6 cut(s) | 945, 1634, 1689, 1773, 1820, 2184 |
| MaeII | ACGT | 6 cut(s) | 1237, 1462, 1824, 2014, 2571, 2845 |
| MaeIII | GTNAC | 4 cut(s) | 11, 107, 1779, 2177 |
| MfeI | CAATTG | 4 cut(s) | 267, 1398, 2331, 2745 |
| MflI | RGATCY | 4 cut(s) | 866, 1815, 2379, 2500 |
| MhlI | GDGCHC | 3 cut(s) | 1164, 1913, 2062 |
| MlsI | TGGCCA | 1 cut(s) | 1230 |
| MluNI | TGGCCA | 1 cut(s) | 1230 |
| MlyI | GAGTC | 4 cut(s) | 239, 503, 643, 1712 |
| MmeI | TCCRAC | 6 cut(s) | 209, 1196, 1216, 1456, 1839, 2847 |
| Mox20I | TGGCCA | 1 cut(s) | 1230 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 545 |
| MscI | TGGCCA | 1 cut(s) | 1230 |
| MslI | CAYNNNNRTG | 4 cut(s) | 372, 692, 1760, 2522 |
| Msp20I | TGGCCA | 1 cut(s) | 1230 |
| MspA1I | CMGCKG | 2 cut(s) | 410, 1970 |
| MspCI | CTTAAG | 2 cut(s) | 224, 2311 |
| MspI | CCGG | 4 cut(s) | 242, 2009, 2558, 2669 |
| MspR9I | CCNGG | 4 cut(s) | 243, 1185, 1458, 2010 |
| MunI | CAATTG | 4 cut(s) | 267, 1398, 2331, 2745 |
| Mva1269I | GAATGC | 2 cut(s) | 880, 1687 |
| MvaI | CCWGG | 2 cut(s) | 1185, 1458 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 941, 977, 1149, 1422, 1606, 1615 |
| NciI | CCSGG | 2 cut(s) | 243, 2010 |
| NlaIV | GGNNCC | 7 cut(s) | 856, 895, 1260, 1617, 1639, 1936, 2502 |
| NmuCI | GTSAC | 1 cut(s) | 11 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspV | TTCGAA | 1 cut(s) | 320 |
| OliI | CACNNNNGTG | 1 cut(s) | 1760 |
| PciSI | GCTCTTC | 3 cut(s) | 165, 1578, 2067 |
| PctI | GAATGC | 2 cut(s) | 880, 1687 |
| PdmI | GAANNNNTTC | 1 cut(s) | 545 |
| PfoI | TCCNGGA | 2 cut(s) | 241, 2008 |
| PinAI | ACCGGT | 1 cut(s) | 2668 |
| PkrI | GCNGC | 9 cut(s) | 64, 217, 256, 412, 532, 982, 1101, 1221, 1475 |
| PleI | GAGTC | 4 cut(s) | 238, 503, 642, 1711 |
| PpsI | GAGTC | 4 cut(s) | 238, 503, 642, 1711 |
| Psp6I | CCWGG | 2 cut(s) | 1183, 1456 |
| PspFI | CCCAGC | 1 cut(s) | 1469 |
| PspGI | CCWGG | 2 cut(s) | 1183, 1456 |
| PspN4I | GGNNCC | 7 cut(s) | 856, 895, 1260, 1617, 1639, 1936, 2502 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 991, 1023, 2308, 2340 |
| PsuI | RGATCY | 4 cut(s) | 866, 1815, 2379, 2500 |
| RseI | CAYNNNNRTG | 4 cut(s) | 372, 692, 1760, 2522 |
| SalI | GTCGAC | 1 cut(s) | 2847 |
| SapI | GCTCTTC | 3 cut(s) | 165, 1578, 2067 |
| SatI | GCNGC | 9 cut(s) | 63, 216, 255, 411, 531, 981, 1100, 1220, 1474 |
| ScaI | AGTACT | 2 cut(s) | 701, 2486 |
| SchI | GAGTC | 4 cut(s) | 239, 503, 643, 1712 |
| ScrFI | CCNGG | 4 cut(s) | 243, 1185, 1458, 2010 |
| SduI | GDGCHC | 3 cut(s) | 1164, 1913, 2062 |
| SfaNI | GCATC | 5 cut(s) | 992, 1293, 1534, 2262, 2893 |
| SfcI | CTRYAG | 1 cut(s) | 92 |
| SfuI | TTCGAA | 1 cut(s) | 320 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 372, 692, 1760, 2522 |
| SmlI | CTYRAG | 6 cut(s) | 224, 987, 1446, 1898, 2311, 2405 |
| SmoI | CTYRAG | 6 cut(s) | 224, 987, 1446, 1898, 2311, 2405 |
| SsiI | CCGC | 4 cut(s) | 410, 413, 1357, 1968 |
| SspI | AATATT | 1 cut(s) | 1849 |
| SspMI | CTAG | 6 cut(s) | 945, 1634, 1689, 1773, 1820, 2184 |
| StyD4I | CCNGG | 4 cut(s) | 241, 1183, 1456, 2008 |
| TaiI | ACGT | 6 cut(s) | 1240, 1465, 1827, 2017, 2574, 2848 |
| TaqI | TCGA | 5 cut(s) | 159, 320, 2167, 2520, 2848 |
| TaqII | GACCGA | 1 cut(s) | 858 |
| TatI | WGTACW | 7 cut(s) | 590, 699, 998, 1972, 2430, 2484, 2792 |
| TauI | GCSGC | 1 cut(s) | 413 |
| TscAI | CASTG | 6 cut(s) | 39, 118, 393, 1354, 1560, 2988 |
| TseFI | GTSAC | 1 cut(s) | 11 |
| TseI | GCWGC | 8 cut(s) | 62, 215, 254, 530, 980, 1099, 1219, 1473 |
| Tsp45I | GTSAC | 1 cut(s) | 11 |
| TspDTI | ATGAA | 9 cut(s) | 554, 630, 639, 723, 968, 1518, 2132, 2358, 2467 |
| TspGWI | ACGGA | 2 cut(s) | 1642, 2888 |
| TspRI | CASTG | 6 cut(s) | 39, 118, 393, 1354, 1560, 2988 |
| Vha464I | CTTAAG | 2 cut(s) | 224, 2311 |
| VneI | GTGCAC | 1 cut(s) | 1909 |
| XapI | RAATTY | 9 cut(s) | 124, 545, 571, 817, 1084, 1661, 1892, 1925, 2086 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1575 |
| XmiI | GTMKAC | 3 cut(s) | 649, 2302, 2848 |
| XmnI | GAANNNNTTC | 1 cut(s) | 545 |
| XspI | CTAG | 6 cut(s) | 945, 1634, 1689, 1773, 1820, 2184 |
| ZraI | GACGTC | 2 cut(s) | 1463, 1825 |
| ZrmI | AGTACT | 2 cut(s) | 701, 2486 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |