transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 73 | 7.9e-14 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 112 - 209 | 1.6e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 136 - 239 | 6.4e-39 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 383 |
| Acc65I | GGTACC | 1 cut(s) | 29 |
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AclWI | GGATC | 3 cut(s) | 691, 704, 1215 |
| AcoI | YGGCCR | 1 cut(s) | 1507 |
| AcsI | RAATTY | 1 cut(s) | 590 |
| AcuI | CTGAAG | 1 cut(s) | 1538 |
| AcyI | GRCGYC | 2 cut(s) | 380, 438 |
| AfaI | GTAC | 4 cut(s) | 31, 613, 653, 1563 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 39, 808 |
| AgsI | TTSAA | 5 cut(s) | 149, 160, 649, 925, 1498 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1361 |
| AjiI | CACGTC | 1 cut(s) | 721 |
| AjnI | CCWGG | 2 cut(s) | 25, 1396 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 819, 851 |
| AluBI | AGCT | 9 cut(s) | 329, 353, 364, 461, 562, 644, 986, 1178, 1460 |
| AluI | AGCT | 9 cut(s) | 329, 353, 364, 461, 562, 644, 986, 1178, 1460 |
| Alw21I | GWGCWC | 2 cut(s) | 564, 1173 |
| Alw26I | GTCTC | 3 cut(s) | 259, 806, 997 |
| AlwI | GGATC | 3 cut(s) | 691, 704, 1215 |
| AoxI | GGCC | 2 cut(s) | 915, 1507 |
| ApeKI | GCWGC | 3 cut(s) | 326, 350, 641 |
| ApoI | RAATTY | 1 cut(s) | 590 |
| Asp718I | GGTACC | 1 cut(s) | 29 |
| AspS9I | GGNCC | 4 cut(s) | 411, 916, 1053, 1424 |
| AsuHPI | GGTGA | 1 cut(s) | 685 |
| AsuII | TTCGAA | 1 cut(s) | 1278 |
| AvaII | GGWCC | 3 cut(s) | 411, 1053, 1424 |
| AxyI | CCTNAGG | 1 cut(s) | 1587 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 603, 636 |
| BalI | TGGCCA | 1 cut(s) | 1509 |
| BamHI | GGATCC | 1 cut(s) | 696 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 3 cut(s) | 798, 1031, 1346 |
| Bbv12I | GWGCWC | 2 cut(s) | 564, 1173 |
| BbvCI | CCTCAGC | 1 cut(s) | 987 |
| BbvI | GCAGC | 3 cut(s) | 338, 362, 653 |
| BccI | CCATC | 4 cut(s) | 506, 687, 875, 1518 |
| BciT130I | CCWGG | 2 cut(s) | 27, 1398 |
| BcoDI | GTCTC | 3 cut(s) | 259, 806, 997 |
| BfaI | CTAG | 2 cut(s) | 864, 1211 |
| BisI | GCNGC | 3 cut(s) | 327, 351, 642 |
| BlsI | GCNGC | 3 cut(s) | 328, 352, 643 |
| BmcAI | AGTACT | 1 cut(s) | 653 |
| Bme1390I | CCNGG | 2 cut(s) | 27, 1398 |
| Bme18I | GGWCC | 3 cut(s) | 411, 1053, 1424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1361 |
| BmgBI | CACGTC | 1 cut(s) | 721 |
| BmgT120I | GGNCC | 4 cut(s) | 411, 916, 1053, 1424 |
| BmiI | GGNNCC | 3 cut(s) | 31, 698, 889 |
| BmrFI | CCNGG | 2 cut(s) | 27, 1398 |
| BmsI | GCATC | 3 cut(s) | 517, 1060, 1261 |
| BpiI | GAAGAC | 3 cut(s) | 798, 1031, 1346 |
| BpmI | CTGGAG | 1 cut(s) | 387 |
| Bpu10I | CCTNAGC | 1 cut(s) | 987 |
| Bpu14I | TTCGAA | 1 cut(s) | 1278 |
| BpuEI | CTTGAG | 4 cut(s) | 350, 496, 605, 790 |
| BsaHI | GRCGYC | 2 cut(s) | 380, 438 |
| BsaI | GGTCTC | 2 cut(s) | 259, 997 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 680 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 39, 808 |
| Bse21I | CCTNAGG | 1 cut(s) | 1587 |
| BseBI | CCWGG | 2 cut(s) | 27, 1398 |
| BseDI | CCNNGG | 2 cut(s) | 25, 680 |
| BseGI | GGATG | 5 cut(s) | 103, 298, 964, 1075, 1564 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 39, 808 |
| BseMII | CTCAG | 2 cut(s) | 978, 1578 |
| BseXI | GCAGC | 3 cut(s) | 338, 362, 653 |
| BseYI | CCCAGC | 1 cut(s) | 1220 |
| BsgI | GTGCAG | 1 cut(s) | 1484 |
| BshFI | GGCC | 2 cut(s) | 917, 1509 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsiHKAI | GWGCWC | 2 cut(s) | 564, 1173 |
| BslFI | GGGAC | 2 cut(s) | 1102, 1368 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 39, 808 |
| BsmAI | GTCTC | 3 cut(s) | 259, 806, 997 |
| BsmBI | CGTCTC | 1 cut(s) | 806 |
| BsmFI | GGGAC | 2 cut(s) | 1102, 1368 |
| BsmI | GAATGC | 2 cut(s) | 864, 1313 |
| BsnI | GGCC | 2 cut(s) | 917, 1509 |
| Bso31I | GGTCTC | 2 cut(s) | 259, 997 |
| Bsp119I | TTCGAA | 1 cut(s) | 1278 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 1173 |
| Bsp143I | GATC | 2 cut(s) | 696, 1207 |
| BspANI | GGCC | 2 cut(s) | 917, 1509 |
| BspCNI | CTCAG | 2 cut(s) | 979, 1579 |
| BspLI | GGNNCC | 3 cut(s) | 31, 698, 889 |
| BspPI | GGATC | 3 cut(s) | 691, 704, 1215 |
| BspT104I | TTCGAA | 1 cut(s) | 1278 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BspTNI | GGTCTC | 2 cut(s) | 259, 997 |
| BssECI | CCNNGG | 2 cut(s) | 25, 680 |
| BssMI | GATC | 2 cut(s) | 696, 1207 |
| BssNI | GRCGYC | 2 cut(s) | 380, 438 |
| BssT1I | CCWWGG | 1 cut(s) | 680 |
| Bst2UI | CCWGG | 2 cut(s) | 27, 1398 |
| Bst4CI | ACNGT | 1 cut(s) | 1030 |
| Bst6I | CTCTTC | 1 cut(s) | 1251 |
| BstACI | GRCGYC | 2 cut(s) | 380, 438 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1146 |
| BstBI | TTCGAA | 1 cut(s) | 1278 |
| BstC8I | GCNNGC | 2 cut(s) | 786, 984 |
| BstDEI | CTNAG | 3 cut(s) | 987, 1308, 1587 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 37 |
| BstF5I | GGATG | 5 cut(s) | 103, 298, 964, 1075, 1564 |
| BstKTI | GATC | 2 cut(s) | 699, 1210 |
| BstMAI | GTCTC | 3 cut(s) | 259, 806, 997 |
| BstMBI | GATC | 2 cut(s) | 696, 1207 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 458, 1079, 1146, 1184 |
| BstNI | CCWGG | 2 cut(s) | 27, 1398 |
| BstNSI | RCATGY | 1 cut(s) | 788 |
| BstSCI | CCNGG | 2 cut(s) | 25, 1396 |
| BstV1I | GCAGC | 3 cut(s) | 338, 362, 653 |
| BstV2I | GAAGAC | 3 cut(s) | 798, 1031, 1346 |
| BstX2I | RGATCY | 2 cut(s) | 696, 1207 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 977 |
| BstYI | RGATCY | 2 cut(s) | 696, 1207 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1587 |
| BsuRI | GGCC | 2 cut(s) | 917, 1509 |
| BtgZI | GCGATG | 1 cut(s) | 1496 |
| BtrI | CACGTC | 1 cut(s) | 721 |
| BtsCI | GGATG | 5 cut(s) | 103, 298, 964, 1075, 1564 |
| Cac8I | GCNNGC | 2 cut(s) | 786, 984 |
| Cfr13I | GGNCC | 4 cut(s) | 411, 916, 1053, 1424 |
| CseI | GACGC | 1 cut(s) | 446 |
| Csp6I | GTAC | 4 cut(s) | 30, 612, 652, 1562 |
| CviAII | CATG | 8 cut(s) | 94, 394, 638, 785, 1204, 1319, 1454, 1547 |
| CviQI | GTAC | 4 cut(s) | 30, 612, 652, 1562 |
| DdeI | CTNAG | 3 cut(s) | 987, 1308, 1587 |
| DpnI | GATC | 2 cut(s) | 698, 1209 |
| DpnII | GATC | 2 cut(s) | 696, 1207 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1361 |
| EaeI | YGGCCR | 1 cut(s) | 1507 |
| Eam1104I | CTCTTC | 1 cut(s) | 1251 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1361 |
| EarI | CTCTTC | 1 cut(s) | 1251 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 1 cut(s) | 680 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 2 cut(s) | 259, 997 |
| Eco47I | GGWCC | 3 cut(s) | 411, 1053, 1424 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco57I | CTGAAG | 1 cut(s) | 1538 |
| Eco81I | CCTNAGG | 1 cut(s) | 1587 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 37 |
| EcoO109I | RGGNCCY | 1 cut(s) | 916 |
| EcoRII | CCWGG | 2 cut(s) | 25, 1396 |
| EcoT14I | CCWWGG | 1 cut(s) | 680 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 680 |
| Esp3I | CGTCTC | 1 cut(s) | 806 |
| FaeI | CATG | 8 cut(s) | 97, 397, 641, 788, 1207, 1322, 1457, 1550 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 549, 581 |
| FaqI | GGGAC | 2 cut(s) | 1102, 1368 |
| FatI | CATG | 8 cut(s) | 93, 393, 637, 784, 1203, 1318, 1453, 1546 |
| Fnu4HI | GCNGC | 3 cut(s) | 327, 351, 642 |
| FokI | GGATG | 5 cut(s) | 110, 305, 951, 1082, 1571 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| Fsp4HI | GCNGC | 3 cut(s) | 327, 351, 642 |
| FspBI | CTAG | 2 cut(s) | 864, 1211 |
| GluI | GCNGC | 3 cut(s) | 327, 351, 642 |
| GsaI | CCCAGC | 1 cut(s) | 1224 |
| GsuI | CTGGAG | 1 cut(s) | 387 |
| HaeIII | GGCC | 2 cut(s) | 917, 1509 |
| HgaI | GACGC | 1 cut(s) | 446 |
| Hin1I | GRCGYC | 2 cut(s) | 380, 438 |
| Hin1II | CATG | 8 cut(s) | 97, 397, 641, 788, 1207, 1322, 1457, 1550 |
| HincII | GTYRAC | 1 cut(s) | 378 |
| HindII | GTYRAC | 1 cut(s) | 378 |
| HindIII | AAGCTT | 1 cut(s) | 1176 |
| HinfI | GANTC | 6 cut(s) | 517, 772, 840, 1033, 1102, 1330 |
| HphI | GGTGA | 1 cut(s) | 685 |
| Hpy166II | GTNNAC | 3 cut(s) | 378, 1403, 1478 |
| Hpy188I | TCNGA | 3 cut(s) | 39, 64, 445 |
| Hpy188III | TCNNGA | 9 cut(s) | 146, 157, 264, 404, 821, 844, 922, 1001, 1211 |
| Hpy8I | GTNNAC | 3 cut(s) | 378, 1403, 1478 |
| HpyAV | CCTTC | 4 cut(s) | 472, 661, 733, 1039 |
| HpyCH4III | ACNGT | 1 cut(s) | 1030 |
| HpyCH4IV | ACGT | 4 cut(s) | 380, 720, 753, 815 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 458, 1079, 1146, 1184 |
| HpyF3I | CTNAG | 3 cut(s) | 987, 1308, 1587 |
| HpySE526I | ACGT | 4 cut(s) | 380, 720, 753, 815 |
| Hsp92I | GRCGYC | 2 cut(s) | 380, 438 |
| Hsp92II | CATG | 8 cut(s) | 97, 397, 641, 788, 1207, 1322, 1457, 1550 |
| KpnI | GGTACC | 1 cut(s) | 33 |
| Kzo9I | GATC | 2 cut(s) | 696, 1207 |
| LmnI | GCTCC | 6 cut(s) | 288, 458, 567, 1457, 1543, 1582 |
| Lsp1109I | GCAGC | 3 cut(s) | 338, 362, 653 |
| LweI | GCATC | 3 cut(s) | 517, 1060, 1261 |
| MaeI | CTAG | 2 cut(s) | 864, 1211 |
| MaeII | ACGT | 4 cut(s) | 380, 720, 753, 815 |
| MaeIII | GTNAC | 3 cut(s) | 434, 937, 1487 |
| MalI | GATC | 2 cut(s) | 698, 1209 |
| MboI | GATC | 2 cut(s) | 696, 1207 |
| MboII | GAAGA | 5 cut(s) | 803, 937, 1036, 1268, 1351 |
| MfeI | CAATTG | 2 cut(s) | 278, 1241 |
| MflI | RGATCY | 2 cut(s) | 696, 1207 |
| MhlI | GDGCHC | 2 cut(s) | 564, 1173 |
| MlsI | TGGCCA | 1 cut(s) | 1509 |
| MluCI | AATT | 8 cut(s) | 150, 190, 278, 538, 590, 1128, 1235, 1241 |
| MluNI | TGGCCA | 1 cut(s) | 1509 |
| MlyI | GAGTC | 3 cut(s) | 511, 781, 1096 |
| MmeI | TCCRAC | 3 cut(s) | 436, 1233, 1397 |
| Mox20I | TGGCCA | 1 cut(s) | 1509 |
| MscI | TGGCCA | 1 cut(s) | 1509 |
| MseI | TTAA | 6 cut(s) | 138, 188, 522, 1200, 1386, 1594 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1112 |
| Msp20I | TGGCCA | 1 cut(s) | 1509 |
| MspR9I | CCNGG | 2 cut(s) | 27, 1398 |
| MunI | CAATTG | 2 cut(s) | 278, 1241 |
| Mva1269I | GAATGC | 2 cut(s) | 864, 1313 |
| MvaI | CCWGG | 2 cut(s) | 27, 1398 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 458, 1079, 1146, 1184 |
| NdeII | GATC | 2 cut(s) | 696, 1207 |
| NlaIII | CATG | 8 cut(s) | 97, 397, 641, 788, 1207, 1322, 1457, 1550 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 698, 889 |
| NmuCI | GTSAC | 2 cut(s) | 434, 937 |
| NspI | RCATGY | 1 cut(s) | 788 |
| NspV | TTCGAA | 1 cut(s) | 1278 |
| PaeI | GCATGC | 1 cut(s) | 788 |
| PctI | GAATGC | 2 cut(s) | 864, 1313 |
| PfeI | GAWTC | 3 cut(s) | 840, 1033, 1330 |
| PkrI | GCNGC | 3 cut(s) | 328, 352, 643 |
| PleI | GAGTC | 3 cut(s) | 511, 780, 1096 |
| PpsI | GAGTC | 3 cut(s) | 511, 780, 1096 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 2 cut(s) | 25, 1396 |
| PspFI | CCCAGC | 1 cut(s) | 1220 |
| PspGI | CCWGG | 2 cut(s) | 25, 1396 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 698, 889 |
| PspPI | GGNCC | 4 cut(s) | 411, 916, 1053, 1424 |
| PsuI | RGATCY | 2 cut(s) | 696, 1207 |
| RsaI | GTAC | 4 cut(s) | 31, 613, 653, 1563 |
| RsaNI | GTAC | 4 cut(s) | 30, 612, 652, 1562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1112 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 6 cut(s) | 138, 188, 522, 1200, 1386, 1594 |
| SatI | GCNGC | 3 cut(s) | 327, 351, 642 |
| Sau3AI | GATC | 2 cut(s) | 696, 1207 |
| Sau96I | GGNCC | 4 cut(s) | 411, 916, 1053, 1424 |
| ScaI | AGTACT | 1 cut(s) | 653 |
| SchI | GAGTC | 3 cut(s) | 511, 781, 1096 |
| ScrFI | CCNGG | 2 cut(s) | 27, 1398 |
| SduI | GDGCHC | 2 cut(s) | 564, 1173 |
| SfaNI | GCATC | 3 cut(s) | 517, 1060, 1261 |
| SfuI | TTCGAA | 1 cut(s) | 1278 |
| SinI | GGWCC | 3 cut(s) | 411, 1053, 1424 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1112 |
| SmlI | CTYRAG | 4 cut(s) | 365, 511, 584, 769 |
| SmoI | CTYRAG | 4 cut(s) | 365, 511, 584, 769 |
| SphI | GCATGC | 1 cut(s) | 788 |
| Sse9I | AATT | 8 cut(s) | 150, 190, 278, 538, 590, 1128, 1235, 1241 |
| SspMI | CTAG | 2 cut(s) | 864, 1211 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 2 cut(s) | 25, 1396 |
| StyI | CCWWGG | 1 cut(s) | 680 |
| TaaI | ACNGT | 1 cut(s) | 1030 |
| TaiI | ACGT | 4 cut(s) | 383, 723, 756, 818 |
| TaqI | TCGA | 4 cut(s) | 263, 904, 1126, 1278 |
| TasI | AATT | 8 cut(s) | 150, 190, 278, 538, 590, 1128, 1235, 1241 |
| TatI | WGTACW | 1 cut(s) | 651 |
| TfiI | GAWTC | 3 cut(s) | 840, 1033, 1330 |
| Tru1I | TTAA | 6 cut(s) | 138, 188, 522, 1200, 1386, 1594 |
| Tru9I | TTAA | 6 cut(s) | 138, 188, 522, 1200, 1386, 1594 |
| TseFI | GTSAC | 2 cut(s) | 434, 937 |
| TseI | GCWGC | 3 cut(s) | 326, 350, 641 |
| Tsp45I | GTSAC | 2 cut(s) | 434, 937 |
| TspDTI | ATGAA | 6 cut(s) | 82, 840, 1217, 1397, 1420, 1563 |
| TspGWI | ACGGA | 1 cut(s) | 791 |
| VpaK11BI | GGWCC | 3 cut(s) | 411, 1053, 1424 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 37 |
| XapI | RAATTY | 1 cut(s) | 590 |
| XbaI | TCTAGA | 1 cut(s) | 1210 |
| XceI | RCATGY | 1 cut(s) | 788 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 851 |
| XspI | CTAG | 2 cut(s) | 864, 1211 |
| ZraI | GACGTC | 1 cut(s) | 381 |
| ZrmI | AGTACT | 1 cut(s) | 653 |