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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 478 |
| Acc36I | ACCTGC | 2 cut(s) | 478, 548 |
| AciI | CCGC | 3 cut(s) | 434, 540, 656 |
| AclWI | GGATC | 1 cut(s) | 113 |
| AcoI | YGGCCR | 1 cut(s) | 236 |
| AcsI | RAATTY | 2 cut(s) | 437, 715 |
| AfaI | GTAC | 1 cut(s) | 125 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 503, 636 |
| AgsI | TTSAA | 8 cut(s) | 56, 169, 212, 311, 412, 483, 608, 744 |
| AjnI | CCWGG | 1 cut(s) | 223 |
| AluBI | AGCT | 2 cut(s) | 392, 816 |
| AluI | AGCT | 2 cut(s) | 392, 816 |
| Alw26I | GTCTC | 1 cut(s) | 409 |
| AlwI | GGATC | 1 cut(s) | 113 |
| Ama87I | CYCGRG | 2 cut(s) | 143, 393 |
| AoxI | GGCC | 2 cut(s) | 97, 236 |
| ApoI | RAATTY | 2 cut(s) | 437, 715 |
| AspS9I | GGNCC | 1 cut(s) | 836 |
| AsuC2I | CCSGG | 2 cut(s) | 144, 145 |
| AsuHPI | GGTGA | 3 cut(s) | 149, 412, 502 |
| AsuII | TTCGAA | 1 cut(s) | 510 |
| AvaI | CYCGRG | 2 cut(s) | 143, 393 |
| AvaII | GGWCC | 1 cut(s) | 836 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| BccI | CCATC | 3 cut(s) | 78, 268, 688 |
| BceAI | ACGGC | 1 cut(s) | 251 |
| BciT130I | CCWGG | 1 cut(s) | 225 |
| BcnI | CCSGG | 2 cut(s) | 144, 145 |
| BcoDI | GTCTC | 1 cut(s) | 409 |
| BfaI | CTAG | 2 cut(s) | 666, 759 |
| BfuAI | ACCTGC | 2 cut(s) | 478, 548 |
| BisI | GCNGC | 1 cut(s) | 656 |
| BlsI | GCNGC | 1 cut(s) | 657 |
| Bme1390I | CCNGG | 3 cut(s) | 144, 145, 225 |
| Bme18I | GGWCC | 1 cut(s) | 836 |
| BmeT110I | CYCGRG | 2 cut(s) | 143, 393 |
| BmgT120I | GGNCC | 1 cut(s) | 836 |
| BmiI | GGNNCC | 2 cut(s) | 91, 230 |
| BmrFI | CCNGG | 3 cut(s) | 144, 145, 225 |
| Bpu14I | TTCGAA | 1 cut(s) | 510 |
| BpuEI | CTTGAG | 1 cut(s) | 285 |
| BpuMI | CCSGG | 2 cut(s) | 144, 145 |
| BsaBI | GATNNNNATC | 1 cut(s) | 511 |
| BsaJI | CCNNGG | 6 cut(s) | 94, 142, 143, 223, 224, 233 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 503, 636 |
| Bse8I | GATNNNNATC | 1 cut(s) | 511 |
| BseBI | CCWGG | 1 cut(s) | 225 |
| BseDI | CCNNGG | 6 cut(s) | 94, 142, 143, 223, 224, 233 |
| BseGI | GGATG | 4 cut(s) | 66, 70, 595, 680 |
| BseJI | GATNNNNATC | 1 cut(s) | 511 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 503, 636 |
| BseMII | CTCAG | 2 cut(s) | 291, 396 |
| BshFI | GGCC | 2 cut(s) | 99, 238 |
| BsiHKCI | CYCGRG | 2 cut(s) | 143, 393 |
| BsiSI | CCGG | 1 cut(s) | 144 |
| BslFI | GGGAC | 2 cut(s) | 250, 438 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 503, 636 |
| BsmAI | GTCTC | 1 cut(s) | 409 |
| BsmFI | GGGAC | 2 cut(s) | 250, 438 |
| BsnI | GGCC | 2 cut(s) | 99, 238 |
| BsoBI | CYCGRG | 2 cut(s) | 143, 393 |
| Bsp119I | TTCGAA | 1 cut(s) | 510 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp143I | GATC | 2 cut(s) | 118, 154 |
| BspACI | CCGC | 3 cut(s) | 434, 540, 656 |
| BspANI | GGCC | 2 cut(s) | 99, 238 |
| BspCNI | CTCAG | 2 cut(s) | 290, 397 |
| BspLI | GGNNCC | 2 cut(s) | 91, 230 |
| BspMI | ACCTGC | 2 cut(s) | 478, 548 |
| BspPI | GGATC | 1 cut(s) | 113 |
| BspT104I | TTCGAA | 1 cut(s) | 510 |
| BssECI | CCNNGG | 6 cut(s) | 94, 142, 143, 223, 224, 233 |
| BssMI | GATC | 2 cut(s) | 118, 154 |
| BssT1I | CCWWGG | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 1 cut(s) | 225 |
| Bst6I | CTCTTC | 2 cut(s) | 407, 603 |
| BstBI | TTCGAA | 1 cut(s) | 510 |
| BstC8I | GCNNGC | 1 cut(s) | 359 |
| BstDEI | CTNAG | 2 cut(s) | 277, 405 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 4 cut(s) | 66, 70, 595, 680 |
| BstKTI | GATC | 2 cut(s) | 121, 157 |
| BstMAI | GTCTC | 1 cut(s) | 409 |
| BstMBI | GATC | 2 cut(s) | 118, 154 |
| BstNI | CCWGG | 1 cut(s) | 225 |
| BstNSI | RCATGY | 2 cut(s) | 83, 361 |
| BstSCI | CCNGG | 3 cut(s) | 142, 143, 223 |
| BsuRI | GGCC | 2 cut(s) | 99, 238 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| BtsCI | GGATG | 4 cut(s) | 66, 70, 595, 680 |
| BveI | ACCTGC | 2 cut(s) | 478, 548 |
| Cac8I | GCNNGC | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 1 cut(s) | 836 |
| Cfr9I | CCCGGG | 1 cut(s) | 143 |
| Csp6I | GTAC | 1 cut(s) | 124 |
| CviAII | CATG | 5 cut(s) | 80, 358, 442, 769, 789 |
| CviJI | RGCY | 8 cut(s) | 99, 181, 238, 392, 524, 804, 816, 846 |
| CviKI_1 | RGCY | 8 cut(s) | 99, 181, 238, 392, 524, 804, 816, 846 |
| CviQI | GTAC | 1 cut(s) | 124 |
| DdeI | CTNAG | 2 cut(s) | 277, 405 |
| DpnI | GATC | 2 cut(s) | 120, 156 |
| DpnII | GATC | 2 cut(s) | 118, 154 |
| EaeI | YGGCCR | 1 cut(s) | 236 |
| Eam1104I | CTCTTC | 2 cut(s) | 407, 603 |
| EarI | CTCTTC | 2 cut(s) | 407, 603 |
| EciI | GGCGGA | 1 cut(s) | 449 |
| Eco130I | CCWWGG | 1 cut(s) | 94 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 836 |
| Eco88I | CYCGRG | 2 cut(s) | 143, 393 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 223 |
| EcoT14I | CCWWGG | 1 cut(s) | 94 |
| EcoT22I | ATGCAT | 1 cut(s) | 363 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 94 |
| FaeI | CATG | 5 cut(s) | 83, 361, 445, 772, 792 |
| FaqI | GGGAC | 2 cut(s) | 250, 438 |
| FatI | CATG | 5 cut(s) | 79, 357, 441, 768, 788 |
| Fnu4HI | GCNGC | 1 cut(s) | 656 |
| FokI | GGATG | 4 cut(s) | 53, 57, 602, 667 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| Fsp4HI | GCNGC | 1 cut(s) | 656 |
| FspBI | CTAG | 2 cut(s) | 666, 759 |
| GluI | GCNGC | 1 cut(s) | 656 |
| HaeIII | GGCC | 2 cut(s) | 99, 238 |
| HapII | CCGG | 1 cut(s) | 144 |
| Hin1II | CATG | 5 cut(s) | 83, 361, 445, 772, 792 |
| HinfI | GANTC | 3 cut(s) | 493, 507, 512 |
| HpaII | CCGG | 1 cut(s) | 144 |
| HphI | GGTGA | 3 cut(s) | 149, 412, 502 |
| Hpy188I | TCNGA | 1 cut(s) | 498 |
| Hpy188III | TCNNGA | 1 cut(s) | 395 |
| HpyAV | CCTTC | 1 cut(s) | 750 |
| HpyCH4V | TGCA | 6 cut(s) | 60, 194, 361, 382, 518, 601 |
| HpyF3I | CTNAG | 2 cut(s) | 277, 405 |
| Hsp92II | CATG | 5 cut(s) | 83, 361, 445, 772, 792 |
| Kzo9I | GATC | 2 cut(s) | 118, 154 |
| LmnI | GCTCC | 1 cut(s) | 779 |
| LpnPI | CCDG | 7 cut(s) | 157, 210, 237, 264, 317, 473, 543 |
| MaeI | CTAG | 2 cut(s) | 666, 759 |
| MaeIII | GTNAC | 4 cut(s) | 400, 471, 578, 668 |
| MalI | GATC | 2 cut(s) | 120, 156 |
| MboI | GATC | 2 cut(s) | 118, 154 |
| MboII | GAAGA | 3 cut(s) | 424, 555, 620 |
| MfeI | CAATTG | 1 cut(s) | 311 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MluCI | AATT | 8 cut(s) | 163, 188, 295, 311, 364, 437, 449, 715 |
| MmeI | TCCRAC | 2 cut(s) | 153, 273 |
| MnlI | CCTC | 3 cut(s) | 370, 391, 604 |
| Mph1103I | ATGCAT | 1 cut(s) | 363 |
| MseI | TTAA | 2 cut(s) | 797, 812 |
| MslI | CAYNNNNRTG | 1 cut(s) | 787 |
| MspI | CCGG | 1 cut(s) | 144 |
| MspR9I | CCNGG | 3 cut(s) | 144, 145, 225 |
| MunI | CAATTG | 1 cut(s) | 311 |
| MvaI | CCWGG | 1 cut(s) | 225 |
| NciI | CCSGG | 2 cut(s) | 144, 145 |
| NdeII | GATC | 2 cut(s) | 118, 154 |
| NlaIII | CATG | 5 cut(s) | 83, 361, 445, 772, 792 |
| NlaIV | GGNNCC | 2 cut(s) | 91, 230 |
| NmuCI | GTSAC | 3 cut(s) | 400, 578, 668 |
| NsiI | ATGCAT | 1 cut(s) | 363 |
| NspI | RCATGY | 2 cut(s) | 83, 361 |
| NspV | TTCGAA | 1 cut(s) | 510 |
| PaeI | GCATGC | 1 cut(s) | 361 |
| PaeR7I | CTCGAG | 1 cut(s) | 393 |
| PaqCI | CACCTGC | 1 cut(s) | 478 |
| PasI | CCCWGGG | 1 cut(s) | 224 |
| PfeI | GAWTC | 3 cut(s) | 493, 507, 512 |
| PkrI | GCNGC | 1 cut(s) | 657 |
| Psp6I | CCWGG | 1 cut(s) | 223 |
| PspGI | CCWGG | 1 cut(s) | 223 |
| PspN4I | GGNNCC | 2 cut(s) | 91, 230 |
| PspPI | GGNCC | 1 cut(s) | 836 |
| RsaI | GTAC | 1 cut(s) | 125 |
| RsaNI | GTAC | 1 cut(s) | 124 |
| RseI | CAYNNNNRTG | 1 cut(s) | 787 |
| SaqAI | TTAA | 2 cut(s) | 797, 812 |
| SatI | GCNGC | 1 cut(s) | 656 |
| Sau3AI | GATC | 2 cut(s) | 118, 154 |
| Sau96I | GGNCC | 1 cut(s) | 836 |
| ScrFI | CCNGG | 3 cut(s) | 144, 145, 225 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| Sfr274I | CTCGAG | 1 cut(s) | 393 |
| SfuI | TTCGAA | 1 cut(s) | 510 |
| SinI | GGWCC | 1 cut(s) | 836 |
| SlaI | CTCGAG | 1 cut(s) | 393 |
| SmaI | CCCGGG | 1 cut(s) | 145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 787 |
| SmlI | CTYRAG | 2 cut(s) | 300, 393 |
| SmoI | CTYRAG | 2 cut(s) | 300, 393 |
| SphI | GCATGC | 1 cut(s) | 361 |
| Sse9I | AATT | 8 cut(s) | 163, 188, 295, 311, 364, 437, 449, 715 |
| SsiI | CCGC | 3 cut(s) | 434, 540, 656 |
| SspMI | CTAG | 2 cut(s) | 666, 759 |
| StyD4I | CCNGG | 3 cut(s) | 142, 143, 223 |
| StyI | CCWWGG | 1 cut(s) | 94 |
| TaqI | TCGA | 2 cut(s) | 394, 510 |
| TasI | AATT | 8 cut(s) | 163, 188, 295, 311, 364, 437, 449, 715 |
| TauI | GCSGC | 1 cut(s) | 658 |
| TfiI | GAWTC | 3 cut(s) | 493, 507, 512 |
| Tru1I | TTAA | 2 cut(s) | 797, 812 |
| Tru9I | TTAA | 2 cut(s) | 797, 812 |
| TseFI | GTSAC | 3 cut(s) | 400, 578, 668 |
| Tsp45I | GTSAC | 3 cut(s) | 400, 578, 668 |
| TspDTI | ATGAA | 5 cut(s) | 430, 555, 606, 757, 777 |
| TspGWI | ACGGA | 1 cut(s) | 111 |
| TspMI | CCCGGG | 1 cut(s) | 143 |
| VpaK11BI | GGWCC | 1 cut(s) | 836 |
| XapI | RAATTY | 2 cut(s) | 437, 715 |
| XceI | RCATGY | 2 cut(s) | 83, 361 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 637 |
| XhoI | CTCGAG | 1 cut(s) | 393 |
| XmaI | CCCGGG | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 666, 759 |
| Zsp2I | ATGCAT | 1 cut(s) | 363 |