transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 394, 1406 |
| AciI | CCGC | 1 cut(s) | 500 |
| AclI | AACGTT | 2 cut(s) | 824, 1178 |
| AcoI | YGGCCR | 1 cut(s) | 1321 |
| AcsI | RAATTY | 2 cut(s) | 338, 1763 |
| AfaI | GTAC | 4 cut(s) | 198, 622, 925, 1171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 376, 417 |
| AflIII | ACRYGT | 1 cut(s) | 1769 |
| AjnI | CCWGG | 1 cut(s) | 1231 |
| AluBI | AGCT | 5 cut(s) | 436, 1072, 1311, 1594, 1757 |
| AluI | AGCT | 5 cut(s) | 436, 1072, 1311, 1594, 1757 |
| Alw21I | GWGCWC | 2 cut(s) | 356, 1008 |
| Alw26I | GTCTC | 3 cut(s) | 18, 317, 735 |
| Alw44I | GTGCAC | 1 cut(s) | 352 |
| AoxI | GGCC | 3 cut(s) | 497, 915, 1321 |
| ApaLI | GTGCAC | 1 cut(s) | 352 |
| ApeKI | GCWGC | 2 cut(s) | 650, 1052 |
| ApoI | RAATTY | 2 cut(s) | 338, 1763 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 825, 1031, 1395 |
| AspLEI | GCGC | 1 cut(s) | 897 |
| AspS9I | GGNCC | 4 cut(s) | 232, 869, 915, 1259 |
| AsuC2I | CCSGG | 1 cut(s) | 413 |
| AsuHPI | GGTGA | 5 cut(s) | 661, 945, 1120, 1348, 1622 |
| AvaII | GGWCC | 3 cut(s) | 232, 869, 1259 |
| BaeGI | GKGCMC | 1 cut(s) | 356 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 612, 645 |
| BalI | TGGCCA | 1 cut(s) | 1323 |
| BanI | GGYRCC | 2 cut(s) | 394, 1406 |
| BanII | GRGCYC | 1 cut(s) | 1418 |
| BauI | CACGAG | 1 cut(s) | 1325 |
| BbsI | GAAGAC | 1 cut(s) | 1471 |
| Bbv12I | GWGCWC | 2 cut(s) | 356, 1008 |
| BbvI | GCAGC | 2 cut(s) | 662, 1039 |
| BceAI | ACGGC | 5 cut(s) | 294, 372, 408, 942, 1394 |
| BciT130I | CCWGG | 1 cut(s) | 1233 |
| BcnI | CCSGG | 1 cut(s) | 413 |
| BcoDI | GTCTC | 3 cut(s) | 18, 317, 735 |
| BfaI | CTAG | 2 cut(s) | 854, 1470 |
| BfmI | CTRYAG | 1 cut(s) | 262 |
| BglII | AGATCT | 1 cut(s) | 190 |
| BisI | GCNGC | 3 cut(s) | 500, 651, 1053 |
| BlpI | GCTNAGC | 1 cut(s) | 684 |
| BlsI | GCNGC | 3 cut(s) | 501, 652, 1054 |
| Bme1390I | CCNGG | 2 cut(s) | 413, 1233 |
| Bme18I | GGWCC | 3 cut(s) | 232, 869, 1259 |
| BmgT120I | GGNCC | 4 cut(s) | 232, 869, 915, 1259 |
| BmiI | GGNNCC | 6 cut(s) | 396, 422, 870, 871, 1408, 1417 |
| BmrFI | CCNGG | 2 cut(s) | 413, 1233 |
| BmsI | GCATC | 9 cut(s) | 25, 62, 368, 436, 526, 696, 895, 1134, 1152 |
| BpiI | GAAGAC | 1 cut(s) | 1471 |
| BpmI | CTGGAG | 1 cut(s) | 1077 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 3 cut(s) | 359, 859, 1109 |
| BpuMI | CCSGG | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 9 cut(s) | 390, 411, 864, 943, 1131, 1185, 1231, 1401, 1410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 459, 489 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 376, 417 |
| BseBI | CCWGG | 1 cut(s) | 1233 |
| BseDI | CCNNGG | 9 cut(s) | 390, 411, 864, 943, 1131, 1185, 1231, 1401, 1410 |
| BseGI | GGATG | 2 cut(s) | 711, 838 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 376, 417 |
| BseRI | GAGGAG | 2 cut(s) | 851, 1106 |
| BseSI | GKGCMC | 1 cut(s) | 356 |
| BseXI | GCAGC | 2 cut(s) | 662, 1039 |
| BsgI | GTGCAG | 1 cut(s) | 1314 |
| BshFI | GGCC | 3 cut(s) | 499, 917, 1323 |
| BshNI | GGYRCC | 2 cut(s) | 394, 1406 |
| BsiHKAI | GWGCWC | 2 cut(s) | 356, 1008 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BsiWI | CGTACG | 1 cut(s) | 923 |
| BslFI | GGGAC | 1 cut(s) | 882 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 376, 417 |
| BsmAI | GTCTC | 3 cut(s) | 18, 317, 735 |
| BsmBI | CGTCTC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 1 cut(s) | 882 |
| BsmI | GAATGC | 2 cut(s) | 1123, 1479 |
| BsnI | GGCC | 3 cut(s) | 499, 917, 1323 |
| Bsp1286I | GDGCHC | 3 cut(s) | 356, 1008, 1418 |
| Bsp143I | GATC | 4 cut(s) | 190, 605, 727, 840 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 684 |
| BspACI | CCGC | 1 cut(s) | 500 |
| BspANI | GGCC | 3 cut(s) | 499, 917, 1323 |
| BspHI | TCATGA | 1 cut(s) | 1153 |
| BspLI | GGNNCC | 6 cut(s) | 396, 422, 870, 871, 1408, 1417 |
| BspT107I | GGYRCC | 2 cut(s) | 394, 1406 |
| BssECI | CCNNGG | 9 cut(s) | 390, 411, 864, 943, 1131, 1185, 1231, 1401, 1410 |
| BssMI | GATC | 4 cut(s) | 190, 605, 727, 840 |
| BssSI | CACGAG | 1 cut(s) | 1325 |
| BssT1I | CCWWGG | 4 cut(s) | 943, 1131, 1185, 1401 |
| Bst2BI | CACGAG | 1 cut(s) | 1325 |
| Bst2UI | CCWGG | 1 cut(s) | 1233 |
| Bst4CI | ACNGT | 1 cut(s) | 865 |
| Bst6I | CTCTTC | 3 cut(s) | 795, 874, 1513 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1448 |
| BstC8I | GCNNGC | 1 cut(s) | 1123 |
| BstDEI | CTNAG | 5 cut(s) | 288, 345, 684, 779, 1590 |
| BstDSI | CCRYGG | 3 cut(s) | 390, 864, 1410 |
| BstF5I | GGATG | 2 cut(s) | 711, 838 |
| BstHHI | GCGC | 1 cut(s) | 897 |
| BstKTI | GATC | 4 cut(s) | 193, 608, 730, 843 |
| BstMAI | GTCTC | 3 cut(s) | 18, 317, 735 |
| BstMBI | GATC | 4 cut(s) | 190, 605, 727, 840 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 467, 914, 1019, 1448 |
| BstNI | CCWGG | 1 cut(s) | 1233 |
| BstNSI | RCATGY | 4 cut(s) | 506, 1385, 1773, 1812 |
| BstSCI | CCNGG | 2 cut(s) | 411, 1231 |
| BstSFI | CTRYAG | 1 cut(s) | 262 |
| BstSLI | GKGCMC | 1 cut(s) | 356 |
| BstV1I | GCAGC | 2 cut(s) | 662, 1039 |
| BstV2I | GAAGAC | 1 cut(s) | 1471 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BsuRI | GGCC | 3 cut(s) | 499, 917, 1323 |
| BtgI | CCRYGG | 3 cut(s) | 390, 864, 1410 |
| BtsCI | GGATG | 2 cut(s) | 711, 838 |
| BtsIMutI | CAGTG | 1 cut(s) | 639 |
| Cac8I | GCNNGC | 1 cut(s) | 1123 |
| CciI | TCATGA | 1 cut(s) | 1153 |
| CfoI | GCGC | 1 cut(s) | 897 |
| Cfr13I | GGNCC | 4 cut(s) | 232, 869, 915, 1259 |
| CseI | GACGC | 3 cut(s) | 438, 1058, 1436 |
| Csp6I | GTAC | 4 cut(s) | 197, 621, 924, 1170 |
| CviQI | GTAC | 4 cut(s) | 197, 621, 924, 1170 |
| DdeI | CTNAG | 5 cut(s) | 288, 345, 684, 779, 1590 |
| DpnI | GATC | 4 cut(s) | 192, 607, 729, 842 |
| DpnII | GATC | 4 cut(s) | 190, 605, 727, 840 |
| DraI | TTTAAA | 1 cut(s) | 1675 |
| EaeI | YGGCCR | 1 cut(s) | 1321 |
| Eam1104I | CTCTTC | 3 cut(s) | 795, 874, 1513 |
| EarI | CTCTTC | 3 cut(s) | 795, 874, 1513 |
| Eco130I | CCWWGG | 4 cut(s) | 943, 1131, 1185, 1401 |
| Eco24I | GRGCYC | 1 cut(s) | 1418 |
| Eco47I | GGWCC | 3 cut(s) | 232, 869, 1259 |
| EcoO109I | RGGNCCY | 1 cut(s) | 869 |
| EcoRI | GAATTC | 2 cut(s) | 338, 1763 |
| EcoRII | CCWGG | 1 cut(s) | 1231 |
| EcoT14I | CCWWGG | 4 cut(s) | 943, 1131, 1185, 1401 |
| EcoT22I | ATGCAT | 3 cut(s) | 77, 910, 1453 |
| EcoT38I | GRGCYC | 1 cut(s) | 1418 |
| ErhI | CCWWGG | 4 cut(s) | 943, 1131, 1185, 1401 |
| Esp3I | CGTCTC | 1 cut(s) | 317 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1188, 1220 |
| FaqI | GGGAC | 1 cut(s) | 882 |
| Fnu4HI | GCNGC | 3 cut(s) | 500, 651, 1053 |
| FokI | GGATG | 2 cut(s) | 718, 845 |
| FriOI | GRGCYC | 1 cut(s) | 1418 |
| Fsp4HI | GCNGC | 3 cut(s) | 500, 651, 1053 |
| FspBI | CTAG | 2 cut(s) | 854, 1470 |
| GlaI | GCGC | 1 cut(s) | 896 |
| GluI | GCNGC | 3 cut(s) | 500, 651, 1053 |
| GsuI | CTGGAG | 1 cut(s) | 1077 |
| HaeIII | GGCC | 3 cut(s) | 499, 917, 1323 |
| HapII | CCGG | 1 cut(s) | 413 |
| HgaI | GACGC | 3 cut(s) | 438, 1058, 1436 |
| HhaI | GCGC | 1 cut(s) | 897 |
| Hin6I | GCGC | 1 cut(s) | 895 |
| HinP1I | GCGC | 1 cut(s) | 895 |
| HincII | GTYRAC | 1 cut(s) | 387 |
| HindII | GTYRAC | 1 cut(s) | 387 |
| HindIII | AAGCTT | 2 cut(s) | 1309, 1592 |
| HinfI | GANTC | 7 cut(s) | 26, 258, 693, 803, 1211, 1586, 1699 |
| HpaII | CCGG | 1 cut(s) | 413 |
| HphI | GGTGA | 5 cut(s) | 661, 945, 1120, 1348, 1622 |
| Hpy166II | GTNNAC | 5 cut(s) | 354, 387, 807, 1339, 1569 |
| Hpy188I | TCNGA | 3 cut(s) | 157, 454, 740 |
| Hpy188III | TCNNGA | 9 cut(s) | 64, 719, 731, 830, 876, 1154, 1215, 1424, 1488 |
| Hpy8I | GTNNAC | 5 cut(s) | 354, 387, 807, 1339, 1569 |
| HpyAV | CCTTC | 3 cut(s) | 1042, 1138, 1814 |
| HpyCH4III | ACNGT | 1 cut(s) | 865 |
| HpyCH4IV | ACGT | 6 cut(s) | 199, 527, 762, 824, 1178, 1243 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 467, 914, 1019, 1448 |
| HpyF3I | CTNAG | 5 cut(s) | 288, 345, 684, 779, 1590 |
| HpySE526I | ACGT | 6 cut(s) | 199, 527, 762, 824, 1178, 1243 |
| HspAI | GCGC | 1 cut(s) | 895 |
| KflI | GGGWCCC | 1 cut(s) | 869 |
| Kzo9I | GATC | 4 cut(s) | 190, 605, 727, 840 |
| LmnI | GCTCC | 6 cut(s) | 420, 467, 714, 1077, 1378, 1421 |
| LpnPI | CCDG | 9 cut(s) | 240, 426, 815, 1041, 1218, 1245, 1409, 1501, 1697 |
| Lsp1109I | GCAGC | 2 cut(s) | 662, 1039 |
| LweI | GCATC | 9 cut(s) | 25, 62, 368, 436, 526, 696, 895, 1134, 1152 |
| MaeI | CTAG | 2 cut(s) | 854, 1470 |
| MaeII | ACGT | 6 cut(s) | 199, 527, 762, 824, 1178, 1243 |
| MaeIII | GTNAC | 5 cut(s) | 200, 951, 1239, 1270, 1804 |
| MalI | GATC | 4 cut(s) | 192, 607, 729, 842 |
| MboI | GATC | 4 cut(s) | 190, 605, 727, 840 |
| MboII | GAAGA | 8 cut(s) | 605, 656, 812, 891, 1403, 1476, 1500, 1727 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MhlI | GDGCHC | 3 cut(s) | 356, 1008, 1418 |
| MlsI | TGGCCA | 1 cut(s) | 1323 |
| MluNI | TGGCCA | 1 cut(s) | 1323 |
| MlyI | GAGTC | 4 cut(s) | 20, 687, 812, 1708 |
| MmeI | TCCRAC | 2 cut(s) | 477, 683 |
| Mox20I | TGGCCA | 1 cut(s) | 1323 |
| Mph1103I | ATGCAT | 3 cut(s) | 77, 910, 1453 |
| MroXI | GAANNNNTTC | 3 cut(s) | 825, 1031, 1395 |
| MscI | TGGCCA | 1 cut(s) | 1323 |
| Msp20I | TGGCCA | 1 cut(s) | 1323 |
| MspI | CCGG | 1 cut(s) | 413 |
| MspR9I | CCNGG | 2 cut(s) | 413, 1233 |
| Mva1269I | GAATGC | 2 cut(s) | 1123, 1479 |
| MvaI | CCWGG | 1 cut(s) | 1233 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 467, 914, 1019, 1448 |
| NciI | CCSGG | 1 cut(s) | 413 |
| NdeII | GATC | 4 cut(s) | 190, 605, 727, 840 |
| NlaIV | GGNNCC | 6 cut(s) | 396, 422, 870, 871, 1408, 1417 |
| NmuCI | GTSAC | 2 cut(s) | 200, 951 |
| NsiI | ATGCAT | 3 cut(s) | 77, 910, 1453 |
| NspI | RCATGY | 4 cut(s) | 506, 1385, 1773, 1812 |
| PagI | TCATGA | 1 cut(s) | 1153 |
| PciI | ACATGT | 1 cut(s) | 1769 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1110 |
| PctI | GAATGC | 2 cut(s) | 1123, 1479 |
| PdmI | GAANNNNTTC | 3 cut(s) | 825, 1031, 1395 |
| PfeI | GAWTC | 3 cut(s) | 258, 1211, 1586 |
| Pfl23II | CGTACG | 1 cut(s) | 923 |
| PkrI | GCNGC | 3 cut(s) | 501, 652, 1054 |
| PleI | GAGTC | 4 cut(s) | 20, 687, 811, 1707 |
| PpsI | GAGTC | 4 cut(s) | 20, 687, 811, 1707 |
| PpuMI | RGGWCCY | 1 cut(s) | 869 |
| PscI | ACATGT | 1 cut(s) | 1769 |
| Psp1406I | AACGTT | 2 cut(s) | 824, 1178 |
| Psp5II | RGGWCCY | 1 cut(s) | 869 |
| Psp6I | CCWGG | 1 cut(s) | 1231 |
| PspGI | CCWGG | 1 cut(s) | 1231 |
| PspLI | CGTACG | 1 cut(s) | 923 |
| PspN4I | GGNNCC | 6 cut(s) | 396, 422, 870, 871, 1408, 1417 |
| PspPI | GGNCC | 4 cut(s) | 232, 869, 915, 1259 |
| PspPPI | RGGWCCY | 1 cut(s) | 869 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1094, 1126, 1228, 1260 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| RsaI | GTAC | 4 cut(s) | 198, 622, 925, 1171 |
| RsaNI | GTAC | 4 cut(s) | 197, 621, 924, 1170 |
| SatI | GCNGC | 3 cut(s) | 500, 651, 1053 |
| Sau3AI | GATC | 4 cut(s) | 190, 605, 727, 840 |
| Sau96I | GGNCC | 4 cut(s) | 232, 869, 915, 1259 |
| SchI | GAGTC | 4 cut(s) | 20, 687, 812, 1708 |
| ScrFI | CCNGG | 2 cut(s) | 413, 1233 |
| SduI | GDGCHC | 3 cut(s) | 356, 1008, 1418 |
| SfaNI | GCATC | 9 cut(s) | 25, 62, 368, 436, 526, 696, 895, 1134, 1152 |
| SfcI | CTRYAG | 1 cut(s) | 262 |
| SinI | GGWCC | 3 cut(s) | 232, 869, 1259 |
| SmlI | CTYRAG | 3 cut(s) | 374, 874, 1088 |
| SmoI | CTYRAG | 3 cut(s) | 374, 874, 1088 |
| SsiI | CCGC | 1 cut(s) | 500 |
| SspMI | CTAG | 2 cut(s) | 854, 1470 |
| StyD4I | CCNGG | 2 cut(s) | 411, 1231 |
| StyI | CCWWGG | 4 cut(s) | 943, 1131, 1185, 1401 |
| TaaI | ACNGT | 1 cut(s) | 865 |
| TaiI | ACGT | 6 cut(s) | 202, 530, 765, 827, 1181, 1246 |
| TaqI | TCGA | 2 cut(s) | 432, 726 |
| TauI | GCSGC | 1 cut(s) | 502 |
| TfiI | GAWTC | 3 cut(s) | 258, 1211, 1586 |
| TscAI | CASTG | 1 cut(s) | 646 |
| TseFI | GTSAC | 2 cut(s) | 200, 951 |
| TseI | GCWGC | 2 cut(s) | 650, 1052 |
| Tsp45I | GTSAC | 2 cut(s) | 200, 951 |
| TspDTI | ATGAA | 3 cut(s) | 1052, 1098, 1776 |
| TspGWI | ACGGA | 3 cut(s) | 224, 538, 1356 |
| TspRI | CASTG | 1 cut(s) | 646 |
| VneI | GTGCAC | 1 cut(s) | 352 |
| VpaK11BI | GGWCC | 3 cut(s) | 232, 869, 1259 |
| XapI | RAATTY | 2 cut(s) | 338, 1763 |
| XceI | RCATGY | 4 cut(s) | 506, 1385, 1773, 1812 |
| XmnI | GAANNNNTTC | 3 cut(s) | 825, 1031, 1395 |
| XspI | CTAG | 2 cut(s) | 854, 1470 |
| Zsp2I | ATGCAT | 3 cut(s) | 77, 910, 1453 |