transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 76 - 173 | 1.1e-33 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 100 - 203 | 1.5e-38 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 330 - 385 | 4.7e-11 | Integrase zinc binding domain |
| rve | PF00665 | 406 - 499 | 8.6e-16 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1824 |
| Acc36I | ACCTGC | 2 cut(s) | 128, 141 |
| AccII | CGCG | 2 cut(s) | 574, 785 |
| AccIII | TCCGGA | 1 cut(s) | 868 |
| AciI | CCGC | 4 cut(s) | 276, 572, 2008, 2041 |
| AclI | AACGTT | 1 cut(s) | 2021 |
| AclWI | GGATC | 2 cut(s) | 1410, 1423 |
| AcsI | RAATTY | 2 cut(s) | 605, 995 |
| AcuI | CTGAAG | 2 cut(s) | 779, 1751 |
| AdeI | CACNNNGTG | 1 cut(s) | 1477 |
| AfaI | GTAC | 4 cut(s) | 6, 505, 545, 830 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1653 |
| AflII | CTTAAG | 2 cut(s) | 1358, 1585 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1889 |
| AjnI | CCWGG | 2 cut(s) | 404, 1924 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2006, 2038 |
| Alw21I | GWGCWC | 2 cut(s) | 889, 2076 |
| Alw26I | GTCTC | 3 cut(s) | 1368, 1916, 2084 |
| AlwI | GGATC | 2 cut(s) | 1410, 1423 |
| Ama87I | CYCGRG | 2 cut(s) | 882, 1815 |
| Aor13HI | TCCGGA | 1 cut(s) | 868 |
| AoxI | GGCC | 5 cut(s) | 182, 1094, 1165, 1561, 2061 |
| ApaI | GGGCCC | 1 cut(s) | 1169 |
| ApeKI | GCWGC | 5 cut(s) | 265, 364, 533, 799, 1745 |
| ApoI | RAATTY | 2 cut(s) | 605, 995 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1492, 1524 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 483 |
| AspLEI | GCGC | 1 cut(s) | 576 |
| AspS9I | GGNCC | 8 cut(s) | 115, 778, 1165, 1166, 1241, 1562, 1952, 2010 |
| AsuHPI | GGTGA | 1 cut(s) | 2100 |
| AvaI | CYCGRG | 2 cut(s) | 882, 1815 |
| AvaII | GGWCC | 5 cut(s) | 115, 778, 1241, 1952, 2010 |
| BaeGI | GKGCMC | 1 cut(s) | 1169 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BamHI | GGATCC | 1 cut(s) | 1415 |
| BanII | GRGCYC | 1 cut(s) | 1169 |
| BbsI | GAAGAC | 4 cut(s) | 208, 702, 1559, 1838 |
| Bbv12I | GWGCWC | 2 cut(s) | 889, 2076 |
| BbvI | GCAGC | 5 cut(s) | 252, 376, 545, 811, 1757 |
| BccI | CCATC | 2 cut(s) | 1403, 1938 |
| BceAI | ACGGC | 1 cut(s) | 329 |
| BciT130I | CCWGG | 2 cut(s) | 406, 1926 |
| BclI | TGATCA | 3 cut(s) | 337, 526, 1138 |
| BcoDI | GTCTC | 3 cut(s) | 1368, 1916, 2084 |
| BfaI | CTAG | 5 cut(s) | 23, 180, 1170, 1566, 1941 |
| BfrI | CTTAAG | 2 cut(s) | 1358, 1585 |
| BfuAI | ACCTGC | 2 cut(s) | 128, 141 |
| BglII | AGATCT | 1 cut(s) | 769 |
| BisI | GCNGC | 5 cut(s) | 266, 365, 534, 800, 1746 |
| BlsI | GCNGC | 5 cut(s) | 267, 366, 535, 801, 1747 |
| Bme1390I | CCNGG | 2 cut(s) | 406, 1926 |
| Bme18I | GGWCC | 5 cut(s) | 115, 778, 1241, 1952, 2010 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1889 |
| BmeT110I | CYCGRG | 2 cut(s) | 882, 1815 |
| BmgT120I | GGNCC | 8 cut(s) | 115, 778, 1165, 1166, 1241, 1562, 1952, 2010 |
| BmiI | GGNNCC | 4 cut(s) | 305, 1167, 1242, 1417 |
| BmrFI | CCNGG | 2 cut(s) | 406, 1926 |
| BmsI | GCATC | 9 cut(s) | 341, 409, 410, 579, 1102, 1588, 1708, 1789, 2114 |
| BpiI | GAAGAC | 4 cut(s) | 208, 702, 1559, 1838 |
| BpuEI | CTTGAG | 1 cut(s) | 1715 |
| Bsa29I | ATCGAT | 1 cut(s) | 789 |
| BsaI | GGTCTC | 1 cut(s) | 2084 |
| BsaJI | CCNNGG | 3 cut(s) | 824, 1391, 1836 |
| BsaWI | WCCGGW | 2 cut(s) | 295, 868 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1653 |
| Bse1I | ACTGG | 2 cut(s) | 972, 1685 |
| Bse3DI | GCAATG | 1 cut(s) | 2107 |
| BseAI | TCCGGA | 1 cut(s) | 868 |
| BseBI | CCWGG | 2 cut(s) | 406, 1926 |
| BseCI | ATCGAT | 1 cut(s) | 789 |
| BseDI | CCNNGG | 3 cut(s) | 824, 1391, 1836 |
| BseGI | GGATG | 8 cut(s) | 214, 401, 594, 699, 877, 937, 1492, 1995 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1653 |
| BseMI | GCAATG | 1 cut(s) | 2107 |
| BseNI | ACTGG | 2 cut(s) | 972, 1685 |
| BseRI | GAGGAG | 4 cut(s) | 245, 704, 2099, 2102 |
| BseSI | GKGCMC | 1 cut(s) | 1169 |
| BseXI | GCAGC | 5 cut(s) | 252, 376, 545, 811, 1757 |
| BsgI | GTGCAG | 2 cut(s) | 978, 2007 |
| Bsh1236I | CGCG | 2 cut(s) | 574, 785 |
| Bsh1285I | CGRYCG | 1 cut(s) | 789 |
| BshFI | GGCC | 5 cut(s) | 184, 1096, 1167, 1563, 2063 |
| BshVI | ATCGAT | 1 cut(s) | 789 |
| BsiEI | CGRYCG | 1 cut(s) | 789 |
| BsiHKAI | GWGCWC | 2 cut(s) | 889, 2076 |
| BsiHKCI | CYCGRG | 2 cut(s) | 882, 1815 |
| BsiSI | CCGG | 2 cut(s) | 296, 869 |
| BslFI | GGGAC | 2 cut(s) | 1254, 1630 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1653 |
| BsmAI | GTCTC | 3 cut(s) | 1368, 1916, 2084 |
| BsmBI | CGTCTC | 1 cut(s) | 1916 |
| BsmFI | GGGAC | 2 cut(s) | 1254, 1630 |
| BsmI | GAATGC | 2 cut(s) | 245, 1841 |
| BsnI | GGCC | 5 cut(s) | 184, 1096, 1167, 1563, 2063 |
| Bso31I | GGTCTC | 1 cut(s) | 2084 |
| BsoBI | CYCGRG | 2 cut(s) | 882, 1815 |
| Bsp120I | GGGCCC | 1 cut(s) | 1165 |
| Bsp1286I | GDGCHC | 3 cut(s) | 889, 1169, 2076 |
| Bsp13I | TCCGGA | 1 cut(s) | 868 |
| Bsp68I | TCGCGA | 1 cut(s) | 785 |
| BspACI | CCGC | 4 cut(s) | 276, 572, 2008, 2041 |
| BspANI | GGCC | 5 cut(s) | 184, 1096, 1167, 1563, 2063 |
| BspDI | ATCGAT | 1 cut(s) | 789 |
| BspEI | TCCGGA | 1 cut(s) | 868 |
| BspFNI | CGCG | 2 cut(s) | 574, 785 |
| BspLI | GGNNCC | 4 cut(s) | 305, 1167, 1242, 1417 |
| BspMI | ACCTGC | 2 cut(s) | 128, 141 |
| BspPI | GGATC | 2 cut(s) | 1410, 1423 |
| BspTI | CTTAAG | 2 cut(s) | 1358, 1585 |
| BspTNI | GGTCTC | 1 cut(s) | 2084 |
| BsrDI | GCAATG | 1 cut(s) | 2107 |
| BsrI | ACTGG | 2 cut(s) | 972, 1685 |
| BssECI | CCNNGG | 3 cut(s) | 824, 1391, 1836 |
| BssT1I | CCWWGG | 2 cut(s) | 824, 1836 |
| Bst2UI | CCWGG | 2 cut(s) | 406, 1926 |
| Bst4CI | ACNGT | 5 cut(s) | 517, 1204, 1529, 1558, 1985 |
| Bst6I | CTCTTC | 1 cut(s) | 1904 |
| BstAFI | CTTAAG | 2 cut(s) | 1358, 1585 |
| BstC8I | GCNNGC | 2 cut(s) | 1750, 1754 |
| BstDEI | CTNAG | 2 cut(s) | 66, 1299 |
| BstF5I | GGATG | 8 cut(s) | 214, 401, 594, 699, 877, 937, 1492, 1995 |
| BstFNI | CGCG | 2 cut(s) | 574, 785 |
| BstHHI | GCGC | 1 cut(s) | 576 |
| BstMAI | GTCTC | 3 cut(s) | 1368, 1916, 2084 |
| BstMCI | CGRYCG | 1 cut(s) | 789 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 350, 805, 1712, 1762 |
| BstNI | CCWGG | 2 cut(s) | 406, 1926 |
| BstNSI | RCATGY | 2 cut(s) | 32, 137 |
| BstSCI | CCNGG | 2 cut(s) | 404, 1924 |
| BstSLI | GKGCMC | 1 cut(s) | 1169 |
| BstUI | CGCG | 2 cut(s) | 574, 785 |
| BstV1I | GCAGC | 5 cut(s) | 252, 376, 545, 811, 1757 |
| BstV2I | GAAGAC | 4 cut(s) | 208, 702, 1559, 1838 |
| BstX2I | RGATCY | 2 cut(s) | 769, 1415 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 300, 945 |
| BstYI | RGATCY | 2 cut(s) | 769, 1415 |
| Bsu15I | ATCGAT | 1 cut(s) | 789 |
| BsuRI | GGCC | 5 cut(s) | 184, 1096, 1167, 1563, 2063 |
| BsuTUI | ATCGAT | 1 cut(s) | 789 |
| BtgZI | GCGATG | 1 cut(s) | 1422 |
| BtsCI | GGATG | 8 cut(s) | 214, 401, 594, 699, 877, 937, 1492, 1995 |
| BtsI | GCAGTG | 1 cut(s) | 1995 |
| BtsIMutI | CAGTG | 2 cut(s) | 1692, 1995 |
| BtuMI | TCGCGA | 1 cut(s) | 785 |
| BveI | ACCTGC | 2 cut(s) | 128, 141 |
| Cac8I | GCNNGC | 2 cut(s) | 1750, 1754 |
| CfoI | GCGC | 1 cut(s) | 576 |
| Cfr13I | GGNCC | 8 cut(s) | 115, 778, 1165, 1166, 1241, 1562, 1952, 2010 |
| ClaI | ATCGAT | 1 cut(s) | 789 |
| CseI | GACGC | 2 cut(s) | 338, 1751 |
| Csp6I | GTAC | 4 cut(s) | 5, 504, 544, 829 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 908, 943 |
| CviQI | GTAC | 4 cut(s) | 5, 504, 544, 829 |
| DdeI | CTNAG | 2 cut(s) | 66, 1299 |
| DraIII | CACNNNGTG | 1 cut(s) | 1477 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1889 |
| Eam1104I | CTCTTC | 1 cut(s) | 1904 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1889 |
| EarI | CTCTTC | 1 cut(s) | 1904 |
| Eco130I | CCWWGG | 2 cut(s) | 824, 1836 |
| Eco147I | AGGCCT | 1 cut(s) | 2063 |
| Eco24I | GRGCYC | 1 cut(s) | 1169 |
| Eco31I | GGTCTC | 1 cut(s) | 2084 |
| Eco47I | GGWCC | 5 cut(s) | 115, 778, 1241, 1952, 2010 |
| Eco57I | CTGAAG | 2 cut(s) | 779, 1751 |
| Eco88I | CYCGRG | 2 cut(s) | 882, 1815 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1166 |
| EcoRII | CCWGG | 2 cut(s) | 404, 1924 |
| EcoT14I | CCWWGG | 2 cut(s) | 824, 1836 |
| EcoT22I | ATGCAT | 2 cut(s) | 403, 2107 |
| EcoT38I | GRGCYC | 1 cut(s) | 1169 |
| ErhI | CCWWGG | 2 cut(s) | 824, 1836 |
| Esp3I | CGTCTC | 1 cut(s) | 1916 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 441, 473, 1529, 1561 |
| FaqI | GGGAC | 2 cut(s) | 1254, 1630 |
| FauNDI | CATATG | 1 cut(s) | 1027 |
| FbaI | TGATCA | 3 cut(s) | 337, 526, 1138 |
| Fnu4HI | GCNGC | 5 cut(s) | 266, 365, 534, 800, 1746 |
| FokI | GGATG | 8 cut(s) | 221, 388, 601, 686, 884, 944, 1479, 1982 |
| FriOI | GRGCYC | 1 cut(s) | 1169 |
| Fsp4HI | GCNGC | 5 cut(s) | 266, 365, 534, 800, 1746 |
| FspBI | CTAG | 5 cut(s) | 23, 180, 1170, 1566, 1941 |
| GlaI | GCGC | 1 cut(s) | 575 |
| GluI | GCNGC | 5 cut(s) | 266, 365, 534, 800, 1746 |
| HaeIII | GGCC | 5 cut(s) | 184, 1096, 1167, 1563, 2063 |
| HapII | CCGG | 2 cut(s) | 296, 869 |
| HgaI | GACGC | 2 cut(s) | 338, 1751 |
| HhaI | GCGC | 1 cut(s) | 576 |
| Hin6I | GCGC | 1 cut(s) | 574 |
| HinP1I | GCGC | 1 cut(s) | 574 |
| HincII | GTYRAC | 1 cut(s) | 1148 |
| HindII | GTYRAC | 1 cut(s) | 1148 |
| HindIII | AAGCTT | 2 cut(s) | 852, 1763 |
| HinfI | GANTC | 5 cut(s) | 379, 409, 865, 989, 1334 |
| HpaII | CCGG | 2 cut(s) | 296, 869 |
| HphI | GGTGA | 1 cut(s) | 2100 |
| Hpy166II | GTNNAC | 5 cut(s) | 844, 1040, 1148, 1993, 2119 |
| Hpy188I | TCNGA | 7 cut(s) | 40, 337, 350, 994, 1200, 1351, 1455 |
| Hpy188III | TCNNGA | 9 cut(s) | 614, 725, 784, 869, 1076, 1377, 1815, 1941, 2069 |
| Hpy8I | GTNNAC | 5 cut(s) | 844, 1040, 1148, 1993, 2119 |
| Hpy99I | CGWCG | 1 cut(s) | 350 |
| HpyAV | CCTTC | 9 cut(s) | 104, 253, 317, 706, 886, 969, 1260, 1460, 1904 |
| HpyCH4III | ACNGT | 5 cut(s) | 517, 1204, 1529, 1558, 1985 |
| HpyCH4IV | ACGT | 2 cut(s) | 645, 2021 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 350, 805, 1712, 1762 |
| HpyF3I | CTNAG | 2 cut(s) | 66, 1299 |
| HpySE526I | ACGT | 2 cut(s) | 645, 2021 |
| HspAI | GCGC | 1 cut(s) | 574 |
| Kpn2I | TCCGGA | 1 cut(s) | 868 |
| Ksp22I | TGATCA | 3 cut(s) | 337, 526, 1138 |
| LmnI | GCTCC | 5 cut(s) | 262, 350, 603, 1581, 1690 |
| Lsp1109I | GCAGC | 5 cut(s) | 252, 376, 545, 811, 1757 |
| LweI | GCATC | 9 cut(s) | 341, 409, 410, 579, 1102, 1588, 1708, 1789, 2114 |
| MaeI | CTAG | 5 cut(s) | 23, 180, 1170, 1566, 1941 |
| MaeII | ACGT | 2 cut(s) | 645, 2021 |
| MaeIII | GTNAC | 4 cut(s) | 326, 511, 1157, 1963 |
| MboII | GAAGA | 7 cut(s) | 208, 707, 785, 1268, 1564, 1843, 1891 |
| MfeI | CAATTG | 2 cut(s) | 425, 1635 |
| MflI | RGATCY | 2 cut(s) | 769, 1415 |
| MhlI | GDGCHC | 3 cut(s) | 889, 1169, 2076 |
| MlyI | GAGTC | 2 cut(s) | 373, 403 |
| MmeI | TCCRAC | 2 cut(s) | 328, 1861 |
| Mph1103I | ATGCAT | 2 cut(s) | 403, 2107 |
| MroI | TCCGGA | 1 cut(s) | 868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 483 |
| MseI | TTAA | 7 cut(s) | 497, 662, 878, 1359, 1536, 1586, 1719 |
| MslI | CAYNNNNRTG | 2 cut(s) | 943, 1026 |
| MspA1I | CMGCKG | 1 cut(s) | 1748 |
| MspCI | CTTAAG | 2 cut(s) | 1358, 1585 |
| MspI | CCGG | 2 cut(s) | 296, 869 |
| MspR9I | CCNGG | 2 cut(s) | 406, 1926 |
| MunI | CAATTG | 2 cut(s) | 425, 1635 |
| Mva1269I | GAATGC | 2 cut(s) | 245, 1841 |
| MvaI | CCWGG | 2 cut(s) | 406, 1926 |
| MvnI | CGCG | 2 cut(s) | 574, 785 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 350, 805, 1712, 1762 |
| NdeI | CATATG | 1 cut(s) | 1027 |
| NlaIV | GGNNCC | 4 cut(s) | 305, 1167, 1242, 1417 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NruI | TCGCGA | 1 cut(s) | 785 |
| NsiI | ATGCAT | 2 cut(s) | 403, 2107 |
| NspI | RCATGY | 2 cut(s) | 32, 137 |
| PaeR7I | CTCGAG | 2 cut(s) | 882, 1815 |
| PceI | AGGCCT | 1 cut(s) | 2063 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 782, 1749 |
| PctI | GAATGC | 2 cut(s) | 245, 1841 |
| PdmI | GAANNNNTTC | 1 cut(s) | 483 |
| PfeI | GAWTC | 3 cut(s) | 865, 989, 1334 |
| PfoI | TCCNGGA | 2 cut(s) | 404, 1924 |
| PkrI | GCNGC | 5 cut(s) | 267, 366, 535, 801, 1747 |
| Ple19I | CGATCG | 1 cut(s) | 789 |
| PleI | GAGTC | 2 cut(s) | 373, 403 |
| PpsI | GAGTC | 2 cut(s) | 373, 403 |
| PsiI | TTATAA | 1 cut(s) | 1824 |
| Psp1406I | AACGTT | 1 cut(s) | 2021 |
| Psp6I | CCWGG | 2 cut(s) | 404, 1924 |
| PspGI | CCWGG | 2 cut(s) | 404, 1924 |
| PspN4I | GGNNCC | 4 cut(s) | 305, 1167, 1242, 1417 |
| PspOMI | GGGCCC | 1 cut(s) | 1165 |
| PspPI | GGNCC | 8 cut(s) | 115, 778, 1165, 1166, 1241, 1562, 1952, 2010 |
| PspXI | VCTCGAGB | 1 cut(s) | 882 |
| PsuI | RGATCY | 2 cut(s) | 769, 1415 |
| PvuI | CGATCG | 1 cut(s) | 789 |
| PvuII | CAGCTG | 1 cut(s) | 1748 |
| RruI | TCGCGA | 1 cut(s) | 785 |
| RsaI | GTAC | 4 cut(s) | 6, 505, 545, 830 |
| RsaNI | GTAC | 4 cut(s) | 5, 504, 544, 829 |
| RseI | CAYNNNNRTG | 2 cut(s) | 943, 1026 |
| SaqAI | TTAA | 7 cut(s) | 497, 662, 878, 1359, 1536, 1586, 1719 |
| SatI | GCNGC | 5 cut(s) | 266, 365, 534, 800, 1746 |
| Sau96I | GGNCC | 8 cut(s) | 115, 778, 1165, 1166, 1241, 1562, 1952, 2010 |
| SchI | GAGTC | 2 cut(s) | 373, 403 |
| ScrFI | CCNGG | 2 cut(s) | 406, 1926 |
| SduI | GDGCHC | 3 cut(s) | 889, 1169, 2076 |
| SfaNI | GCATC | 9 cut(s) | 341, 409, 410, 579, 1102, 1588, 1708, 1789, 2114 |
| Sfr274I | CTCGAG | 2 cut(s) | 882, 1815 |
| SinI | GGWCC | 5 cut(s) | 115, 778, 1241, 1952, 2010 |
| SlaI | CTCGAG | 2 cut(s) | 882, 1815 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 943, 1026 |
| SmlI | CTYRAG | 5 cut(s) | 882, 1358, 1585, 1694, 1815 |
| SmoI | CTYRAG | 5 cut(s) | 882, 1358, 1585, 1694, 1815 |
| SseBI | AGGCCT | 1 cut(s) | 2063 |
| SsiI | CCGC | 4 cut(s) | 276, 572, 2008, 2041 |
| SspMI | CTAG | 5 cut(s) | 23, 180, 1170, 1566, 1941 |
| StuI | AGGCCT | 1 cut(s) | 2063 |
| StyD4I | CCNGG | 2 cut(s) | 404, 1924 |
| StyI | CCWWGG | 2 cut(s) | 824, 1836 |
| TaaI | ACNGT | 5 cut(s) | 517, 1204, 1529, 1558, 1985 |
| TaiI | ACGT | 2 cut(s) | 648, 2024 |
| TaqI | TCGA | 5 cut(s) | 219, 789, 883, 1816, 1852 |
| TaqII | GACCGA | 1 cut(s) | 766 |
| TfiI | GAWTC | 3 cut(s) | 865, 989, 1334 |
| Tru1I | TTAA | 7 cut(s) | 497, 662, 878, 1359, 1536, 1586, 1719 |
| Tru9I | TTAA | 7 cut(s) | 497, 662, 878, 1359, 1536, 1586, 1719 |
| TscAI | CASTG | 2 cut(s) | 1692, 1995 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| TseI | GCWGC | 5 cut(s) | 265, 364, 533, 799, 1745 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 8 cut(s) | 665, 730, 989, 1014, 1225, 1242, 1791, 2031 |
| TspGWI | ACGGA | 3 cut(s) | 107, 458, 1781 |
| TspRI | CASTG | 2 cut(s) | 1692, 1995 |
| Vha464I | CTTAAG | 2 cut(s) | 1358, 1585 |
| VpaK11BI | GGWCC | 5 cut(s) | 115, 778, 1241, 1952, 2010 |
| XapI | RAATTY | 2 cut(s) | 605, 995 |
| XbaI | TCTAGA | 1 cut(s) | 1940 |
| XceI | RCATGY | 2 cut(s) | 32, 137 |
| XhoI | CTCGAG | 2 cut(s) | 882, 1815 |
| XmnI | GAANNNNTTC | 1 cut(s) | 483 |
| XspI | CTAG | 5 cut(s) | 23, 180, 1170, 1566, 1941 |
| Zsp2I | ATGCAT | 2 cut(s) | 403, 2107 |