transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1797 |
| AarI | CACCTGC | 1 cut(s) | 4420 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 924 |
| AatII | GACGTC | 2 cut(s) | 922, 1152 |
| Acc16I | TGCGCA | 1 cut(s) | 1744 |
| Acc36I | ACCTGC | 2 cut(s) | 3409, 4420 |
| AccB1I | GGYRCC | 2 cut(s) | 2364, 3877 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 956, 1227, 2529 |
| AccI | GTMKAC | 2 cut(s) | 1461, 4027 |
| AccII | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| AccIII | TCCGGA | 1 cut(s) | 4327 |
| AciI | CCGC | 8 cut(s) | 632, 678, 989, 2447, 2660, 2739, 3173, 3443 |
| AclI | AACGTT | 1 cut(s) | 3944 |
| AclWI | GGATC | 5 cut(s) | 431, 642, 1403, 2453, 3490 |
| AcoI | YGGCCR | 4 cut(s) | 1169, 3366, 3747, 3986 |
| AcuI | CTGAAG | 3 cut(s) | 416, 446, 3849 |
| AcyI | GRCGYC | 2 cut(s) | 919, 1149 |
| AdeI | CACNNNGTG | 2 cut(s) | 2092, 2336 |
| AfaI | GTAC | 4 cut(s) | 605, 2008, 2033, 4369 |
| AflIII | ACRYGT | 3 cut(s) | 1464, 1769, 1852 |
| AjiI | CACGTC | 1 cut(s) | 1687 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3814, 3846 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 383, 413, 415, 445, 462, 494 |
| Alw21I | GWGCWC | 4 cut(s) | 819, 1133, 1350, 2354 |
| Alw26I | GTCTC | 3 cut(s) | 1840, 3502, 3927 |
| AlwI | GGATC | 5 cut(s) | 431, 642, 1403, 2453, 3490 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 394 |
| Ama87I | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| Aor13HI | TCCGGA | 1 cut(s) | 4327 |
| ApaI | GGGCCC | 6 cut(s) | 650, 916, 963, 1000, 1146, 1234 |
| ApeKI | GCWGC | 3 cut(s) | 2821, 2824, 2881 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3132, 3164 |
| AseI | ATTAAT | 3 cut(s) | 348, 1487, 3291 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1518 |
| AspA2I | CCTAGG | 1 cut(s) | 2318 |
| AspLEI | GCGC | 9 cut(s) | 82, 282, 1083, 1085, 1300, 1302, 1745, 2417, 3670 |
| AsuC2I | CCSGG | 5 cut(s) | 169, 622, 628, 644, 645 |
| AsuHPI | GGTGA | 7 cut(s) | 389, 1050, 2489, 3790, 4116, 4177, 4514 |
| AsuII | TTCGAA | 2 cut(s) | 1100, 2936 |
| AvaI | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| AvaII | GGWCC | 9 cut(s) | 391, 421, 538, 624, 947, 1218, 1262, 3148, 3980 |
| AvrII | CCTAGG | 1 cut(s) | 2318 |
| BaeGI | GKGCMC | 8 cut(s) | 650, 916, 963, 1000, 1146, 1234, 2367, 2970 |
| BalI | TGGCCA | 1 cut(s) | 3749 |
| BanI | GGYRCC | 2 cut(s) | 2364, 3877 |
| BanII | GRGCYC | 9 cut(s) | 650, 819, 916, 963, 1000, 1133, 1146, 1234, 1350 |
| BauI | CACGAG | 2 cut(s) | 830, 1038 |
| Bbv12I | GWGCWC | 4 cut(s) | 819, 1133, 1350, 2354 |
| BbvI | GCAGC | 3 cut(s) | 2808, 2811, 2893 |
| BceAI | ACGGC | 1 cut(s) | 1184 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4375, 4409 |
| BciVI | GTATCC | 1 cut(s) | 27 |
| BclI | TGATCA | 3 cut(s) | 565, 2274, 4243 |
| BcnI | CCSGG | 5 cut(s) | 169, 622, 628, 644, 645 |
| BcoDI | GTCTC | 3 cut(s) | 1840, 3502, 3927 |
| BfmI | CTRYAG | 1 cut(s) | 795 |
| BfoI | RGCGCY | 1 cut(s) | 2418 |
| BfuAI | ACCTGC | 2 cut(s) | 3409, 4420 |
| BfuI | GTATCC | 1 cut(s) | 27 |
| BisI | GCNGC | 3 cut(s) | 2822, 2825, 2882 |
| BlnI | CCTAGG | 1 cut(s) | 2318 |
| BlsI | GCNGC | 3 cut(s) | 2823, 2826, 2883 |
| Bme18I | GGWCC | 9 cut(s) | 391, 421, 538, 624, 947, 1218, 1262, 3148, 3980 |
| BmeT110I | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| BmgBI | CACGTC | 1 cut(s) | 1687 |
| BmrI | ACTGGG | 1 cut(s) | 730 |
| BmsI | GCATC | 5 cut(s) | 2893, 3055, 3293, 3326, 4418 |
| BmuI | ACTGGG | 1 cut(s) | 730 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2379 |
| BpmI | CTGGAG | 1 cut(s) | 4173 |
| Bpu10I | CCTNAGC | 1 cut(s) | 662 |
| Bpu14I | TTCGAA | 2 cut(s) | 1100, 2936 |
| BpuEI | CTTGAG | 2 cut(s) | 1594, 2093 |
| BpuMI | CCSGG | 5 cut(s) | 169, 622, 628, 644, 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 3211 |
| BsaBI | GATNNNNATC | 3 cut(s) | 441, 1191, 3594 |
| BsaHI | GRCGYC | 2 cut(s) | 919, 1149 |
| BsaI | GGTCTC | 2 cut(s) | 1840, 3502 |
| BsaWI | WCCGGW | 2 cut(s) | 1259, 4327 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4146, 4176 |
| Bse118I | RCCGGY | 1 cut(s) | 1778 |
| Bse1I | ACTGG | 4 cut(s) | 736, 810, 4127, 4266 |
| Bse3DI | GCAATG | 4 cut(s) | 1417, 3488, 3899, 4411 |
| Bse8I | GATNNNNATC | 3 cut(s) | 441, 1191, 3594 |
| BseAI | TCCGGA | 1 cut(s) | 4327 |
| BseCI | ATCGAT | 1 cut(s) | 3211 |
| BseJI | GATNNNNATC | 3 cut(s) | 441, 1191, 3594 |
| BseMI | GCAATG | 4 cut(s) | 1417, 3488, 3899, 4411 |
| BseMII | CTCAG | 3 cut(s) | 32, 35, 528 |
| BseNI | ACTGG | 4 cut(s) | 736, 810, 4127, 4266 |
| BsePI | GCGCGC | 2 cut(s) | 1081, 1298 |
| BseRI | GAGGAG | 1 cut(s) | 2825 |
| BseSI | GKGCMC | 8 cut(s) | 650, 916, 963, 1000, 1146, 1234, 2367, 2970 |
| BseXI | GCAGC | 3 cut(s) | 2808, 2811, 2893 |
| BsgI | GTGCAG | 3 cut(s) | 3437, 3514, 3768 |
| Bsh1236I | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| Bsh1285I | CGRYCG | 2 cut(s) | 3215, 3373 |
| BshNI | GGYRCC | 2 cut(s) | 2364, 3877 |
| BshVI | ATCGAT | 1 cut(s) | 3211 |
| BsiEI | CGRYCG | 2 cut(s) | 3215, 3373 |
| BsiHKAI | GWGCWC | 4 cut(s) | 819, 1133, 1350, 2354 |
| BsiHKCI | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| BsiSI | CCGG | 8 cut(s) | 168, 622, 627, 644, 1260, 1779, 3440, 4328 |
| BslFI | GGGAC | 5 cut(s) | 960, 1231, 2882, 3568, 4344 |
| BsmAI | GTCTC | 3 cut(s) | 1840, 3502, 3927 |
| BsmFI | GGGAC | 5 cut(s) | 960, 1231, 2882, 3568, 4344 |
| BsmI | GAATGC | 2 cut(s) | 1077, 1294 |
| Bso31I | GGTCTC | 2 cut(s) | 1840, 3502 |
| BsoBI | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| Bsp119I | TTCGAA | 2 cut(s) | 1100, 2936 |
| Bsp120I | GGGCCC | 6 cut(s) | 646, 912, 959, 996, 1142, 1230 |
| Bsp13I | TCCGGA | 1 cut(s) | 4327 |
| Bsp1407I | TGTACA | 1 cut(s) | 2006 |
| Bsp19I | CCATGG | 2 cut(s) | 1109, 1326 |
| BspACI | CCGC | 8 cut(s) | 632, 678, 989, 2447, 2660, 2739, 3173, 3443 |
| BspCNI | CTCAG | 3 cut(s) | 33, 34, 527 |
| BspDI | ATCGAT | 1 cut(s) | 3211 |
| BspEI | TCCGGA | 1 cut(s) | 4327 |
| BspFNI | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| BspMI | ACCTGC | 2 cut(s) | 3409, 4420 |
| BspPI | GGATC | 5 cut(s) | 431, 642, 1403, 2453, 3490 |
| BspT104I | TTCGAA | 2 cut(s) | 1100, 2936 |
| BspT107I | GGYRCC | 2 cut(s) | 2364, 3877 |
| BspTNI | GGTCTC | 2 cut(s) | 1840, 3502 |
| BsrDI | GCAATG | 4 cut(s) | 1417, 3488, 3899, 4411 |
| BsrFI | RCCGGY | 1 cut(s) | 1778 |
| BsrGI | TGTACA | 1 cut(s) | 2006 |
| BsrI | ACTGG | 4 cut(s) | 736, 810, 4127, 4266 |
| BssAI | RCCGGY | 1 cut(s) | 1778 |
| BssHII | GCGCGC | 2 cut(s) | 1081, 1298 |
| BssNI | GRCGYC | 2 cut(s) | 919, 1149 |
| BssSI | CACGAG | 2 cut(s) | 830, 1038 |
| BssT1I | CCWWGG | 6 cut(s) | 1109, 1326, 2318, 2742, 2919, 3983 |
| Bst2BI | CACGAG | 2 cut(s) | 830, 1038 |
| Bst6I | CTCTTC | 3 cut(s) | 300, 2826, 2997 |
| BstACI | GRCGYC | 2 cut(s) | 919, 1149 |
| BstAUI | TGTACA | 1 cut(s) | 2006 |
| BstBI | TTCGAA | 2 cut(s) | 1100, 2936 |
| BstC8I | GCNNGC | 6 cut(s) | 1083, 1300, 1780, 3529, 3951, 4388 |
| BstDSI | CCRYGG | 6 cut(s) | 1109, 1166, 1326, 1654, 1801, 1885 |
| BstEII | GGTNACC | 1 cut(s) | 1056 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1210 |
| BstFNI | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| BstH2I | RGCGCY | 1 cut(s) | 2418 |
| BstHHI | GCGC | 9 cut(s) | 82, 282, 1083, 1085, 1300, 1302, 1745, 2417, 3670 |
| BstMAI | GTCTC | 3 cut(s) | 1840, 3502, 3927 |
| BstMCI | CGRYCG | 2 cut(s) | 3215, 3373 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 1089, 1306 |
| BstNSI | RCATGY | 9 cut(s) | 54, 1468, 1700, 1704, 1773, 1856, 3266, 4019, 4390 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2379 |
| BstPI | GGTNACC | 1 cut(s) | 1056 |
| BstSFI | CTRYAG | 1 cut(s) | 795 |
| BstSLI | GKGCMC | 8 cut(s) | 650, 916, 963, 1000, 1146, 1234, 2367, 2970 |
| BstUI | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| BstV1I | GCAGC | 3 cut(s) | 2808, 2811, 2893 |
| Bsu15I | ATCGAT | 1 cut(s) | 3211 |
| BsuI | GTATCC | 1 cut(s) | 27 |
| BsuTUI | ATCGAT | 1 cut(s) | 3211 |
| BtgI | CCRYGG | 6 cut(s) | 1109, 1166, 1326, 1654, 1801, 1885 |
| BtgZI | GCGATG | 1 cut(s) | 3780 |
| BtrI | CACGTC | 1 cut(s) | 1687 |
| BtsIMutI | CAGTG | 3 cut(s) | 743, 817, 3873 |
| BveI | ACCTGC | 2 cut(s) | 3409, 4420 |
| Cac8I | GCNNGC | 6 cut(s) | 1083, 1300, 1780, 3529, 3951, 4388 |
| CaiI | CAGNNNCTG | 1 cut(s) | 394 |
| CfoI | GCGC | 9 cut(s) | 82, 282, 1083, 1085, 1300, 1302, 1745, 2417, 3670 |
| Cfr10I | RCCGGY | 1 cut(s) | 1778 |
| Cfr9I | CCCGGG | 1 cut(s) | 643 |
| ClaI | ATCGAT | 1 cut(s) | 3211 |
| CpoI | CGGWCCG | 1 cut(s) | 624 |
| Csp6I | GTAC | 4 cut(s) | 604, 2007, 2032, 4368 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2847, 2882, 4437, 4472 |
| CspI | CGGWCCG | 1 cut(s) | 624 |
| CviQI | GTAC | 4 cut(s) | 604, 2007, 2032, 4368 |
| DraI | TTTAAA | 1 cut(s) | 111 |
| DraIII | CACNNNGTG | 2 cut(s) | 2092, 2336 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 924 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 924 |
| EaeI | YGGCCR | 4 cut(s) | 1169, 3366, 3747, 3986 |
| Eam1104I | CTCTTC | 3 cut(s) | 300, 2826, 2997 |
| EarI | CTCTTC | 3 cut(s) | 300, 2826, 2997 |
| EciI | GGCGGA | 3 cut(s) | 647, 2675, 3458 |
| Ecl136II | GAGCTC | 3 cut(s) | 817, 1131, 1348 |
| Eco130I | CCWWGG | 6 cut(s) | 1109, 1326, 2318, 2742, 2919, 3983 |
| Eco147I | AGGCCT | 1 cut(s) | 1359 |
| Eco24I | GRGCYC | 9 cut(s) | 650, 819, 916, 963, 1000, 1133, 1146, 1234, 1350 |
| Eco31I | GGTCTC | 2 cut(s) | 1840, 3502 |
| Eco47I | GGWCC | 9 cut(s) | 391, 421, 538, 624, 947, 1218, 1262, 3148, 3980 |
| Eco53kI | GAGCTC | 3 cut(s) | 817, 1131, 1348 |
| Eco57I | CTGAAG | 3 cut(s) | 416, 446, 3849 |
| Eco88I | CYCGRG | 3 cut(s) | 643, 723, 1210 |
| Eco91I | GGTNACC | 1 cut(s) | 1056 |
| EcoICRI | GAGCTC | 3 cut(s) | 817, 1131, 1348 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1210 |
| EcoO109I | RGGNCCY | 4 cut(s) | 391, 912, 997, 1142 |
| EcoO65I | GGTNACC | 1 cut(s) | 1056 |
| EcoRI | GAATTC | 2 cut(s) | 1561, 2663 |
| EcoT14I | CCWWGG | 6 cut(s) | 1109, 1326, 2318, 2742, 2919, 3983 |
| EcoT22I | ATGCAT | 4 cut(s) | 1702, 3319, 3756, 4433 |
| EcoT38I | GRGCYC | 9 cut(s) | 650, 819, 916, 963, 1000, 1133, 1146, 1234, 1350 |
| ErhI | CCWWGG | 6 cut(s) | 1109, 1326, 2318, 2742, 2919, 3983 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2714, 2746, 3687, 3719 |
| FaqI | GGGAC | 5 cut(s) | 960, 1231, 2882, 3568, 4344 |
| FauNDI | CATATG | 1 cut(s) | 1594 |
| FbaI | TGATCA | 3 cut(s) | 565, 2274, 4243 |
| FblI | GTMKAC | 2 cut(s) | 1461, 4027 |
| Fnu4HI | GCNGC | 3 cut(s) | 2822, 2825, 2882 |
| FriOI | GRGCYC | 9 cut(s) | 650, 819, 916, 963, 1000, 1133, 1146, 1234, 1350 |
| Fsp4HI | GCNGC | 3 cut(s) | 2822, 2825, 2882 |
| FspAI | RTGCGCAY | 1 cut(s) | 1744 |
| FspI | TGCGCA | 1 cut(s) | 1744 |
| GlaI | GCGC | 9 cut(s) | 81, 281, 1082, 1084, 1299, 1301, 1744, 2416, 3669 |
| GluI | GCNGC | 3 cut(s) | 2822, 2825, 2882 |
| GsuI | CTGGAG | 1 cut(s) | 4173 |
| HaeII | RGCGCY | 1 cut(s) | 2418 |
| HapII | CCGG | 8 cut(s) | 168, 622, 627, 644, 1260, 1779, 3440, 4328 |
| HhaI | GCGC | 9 cut(s) | 82, 282, 1083, 1085, 1300, 1302, 1745, 2417, 3670 |
| Hin1I | GRCGYC | 2 cut(s) | 919, 1149 |
| Hin6I | GCGC | 9 cut(s) | 80, 280, 1081, 1083, 1298, 1300, 1743, 2415, 3668 |
| HinP1I | GCGC | 9 cut(s) | 80, 280, 1081, 1083, 1298, 1300, 1743, 2415, 3668 |
| HincII | GTYRAC | 2 cut(s) | 3424, 4028 |
| HindII | GTYRAC | 2 cut(s) | 3424, 4028 |
| HindIII | AAGCTT | 2 cut(s) | 1623, 3335 |
| HpaI | GTTAAC | 1 cut(s) | 3424 |
| HpaII | CCGG | 8 cut(s) | 168, 622, 627, 644, 1260, 1779, 3440, 4328 |
| HphI | GGTGA | 7 cut(s) | 389, 1050, 2489, 3790, 4116, 4177, 4514 |
| Hpy166II | GTNNAC | 9 cut(s) | 65, 161, 520, 1462, 1837, 2309, 3424, 4028, 4523 |
| Hpy188I | TCNGA | 7 cut(s) | 42, 788, 1186, 1319, 1513, 2721, 3604 |
| Hpy8I | GTNNAC | 9 cut(s) | 65, 161, 520, 1462, 1837, 2309, 3424, 4028, 4523 |
| Hpy99I | CGWCG | 5 cut(s) | 921, 930, 1151, 4029, 4386 |
| HpyAV | CCTTC | 6 cut(s) | 781, 2681, 2716, 3007, 3716, 3873 |
| HpyCH4IV | ACGT | 7 cut(s) | 194, 919, 1149, 1686, 2753, 3944, 4024 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 1089, 1306 |
| HpySE526I | ACGT | 7 cut(s) | 194, 919, 1149, 1686, 2753, 3944, 4024 |
| Hsp92I | GRCGYC | 2 cut(s) | 919, 1149 |
| HspAI | GCGC | 9 cut(s) | 80, 280, 1081, 1083, 1298, 1300, 1743, 2415, 3668 |
| Kpn2I | TCCGGA | 1 cut(s) | 4327 |
| KroI | GCCGGC | 1 cut(s) | 1778 |
| KroNI | GCCGGC | 1 cut(s) | 1780 |
| Ksp22I | TGATCA | 3 cut(s) | 565, 2274, 4243 |
| KspAI | GTTAAC | 1 cut(s) | 3424 |
| LmnI | GCTCC | 6 cut(s) | 822, 1136, 1353, 3063, 3281, 4330 |
| Lsp1109I | GCAGC | 3 cut(s) | 2808, 2811, 2893 |
| LweI | GCATC | 5 cut(s) | 2893, 3055, 3293, 3326, 4418 |
| MaeII | ACGT | 7 cut(s) | 194, 919, 1149, 1686, 2753, 3944, 4024 |
| MfeI | CAATTG | 3 cut(s) | 2709, 3362, 3714 |
| MlsI | TGGCCA | 1 cut(s) | 3749 |
| MluNI | TGGCCA | 1 cut(s) | 3749 |
| MlyI | GAGTC | 3 cut(s) | 548, 1230, 4023 |
| MmeI | TCCRAC | 5 cut(s) | 2020, 2093, 2755, 2934, 3669 |
| Mox20I | TGGCCA | 1 cut(s) | 3749 |
| Mph1103I | ATGCAT | 4 cut(s) | 1702, 3319, 3756, 4433 |
| MroI | TCCGGA | 1 cut(s) | 4327 |
| MroNI | GCCGGC | 1 cut(s) | 1778 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1518 |
| MscI | TGGCCA | 1 cut(s) | 3749 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1750, 2370, 3199, 3759, 4352 |
| Msp20I | TGGCCA | 1 cut(s) | 3749 |
| MspI | CCGG | 8 cut(s) | 168, 622, 627, 644, 1260, 1779, 3440, 4328 |
| MunI | CAATTG | 3 cut(s) | 2709, 3362, 3714 |
| Mva1269I | GAATGC | 2 cut(s) | 1077, 1294 |
| MvnI | CGCG | 5 cut(s) | 1081, 1083, 1298, 1300, 1761 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 1089, 1306 |
| NaeI | GCCGGC | 1 cut(s) | 1780 |
| NciI | CCSGG | 5 cut(s) | 169, 622, 628, 644, 645 |
| NcoI | CCATGG | 2 cut(s) | 1109, 1326 |
| NdeI | CATATG | 1 cut(s) | 1594 |
| NgoMIV | GCCGGC | 1 cut(s) | 1778 |
| NmuCI | GTSAC | 9 cut(s) | 613, 1056, 1421, 1762, 1805, 2016, 2243, 3778, 4156 |
| NsbI | TGCGCA | 1 cut(s) | 1744 |
| NsiI | ATGCAT | 4 cut(s) | 1702, 3319, 3756, 4433 |
| NspI | RCATGY | 9 cut(s) | 54, 1468, 1700, 1704, 1773, 1856, 3266, 4019, 4390 |
| NspV | TTCGAA | 2 cut(s) | 1100, 2936 |
| PaeI | GCATGC | 1 cut(s) | 4390 |
| PaeR7I | CTCGAG | 2 cut(s) | 723, 1210 |
| PaqCI | CACCTGC | 1 cut(s) | 4420 |
| PasI | CCCWGGG | 2 cut(s) | 939, 1405 |
| PauI | GCGCGC | 2 cut(s) | 1081, 1298 |
| PceI | AGGCCT | 1 cut(s) | 1359 |
| PciI | ACATGT | 3 cut(s) | 1464, 1769, 1852 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1500 |
| PctI | GAATGC | 2 cut(s) | 1077, 1294 |
| PdiI | GCCGGC | 1 cut(s) | 1780 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1518 |
| PfeI | GAWTC | 9 cut(s) | 7, 17, 1756, 3470, 3659, 3683, 3791, 3871, 4505 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 956, 1227, 2529 |
| PkrI | GCNGC | 3 cut(s) | 2823, 2826, 2883 |
| Ple19I | CGATCG | 2 cut(s) | 3215, 3373 |
| PleI | GAGTC | 3 cut(s) | 548, 1230, 4023 |
| PpsI | GAGTC | 3 cut(s) | 548, 1230, 4023 |
| PpuMI | RGGWCCY | 1 cut(s) | 391 |
| PscI | ACATGT | 3 cut(s) | 1464, 1769, 1852 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2379 |
| PshBI | ATTAAT | 3 cut(s) | 348, 1487, 3291 |
| PsiI | TTATAA | 1 cut(s) | 1797 |
| Psp124BI | GAGCTC | 3 cut(s) | 819, 1133, 1350 |
| Psp1406I | AACGTT | 1 cut(s) | 3944 |
| Psp5II | RGGWCCY | 1 cut(s) | 391 |
| PspEI | GGTNACC | 1 cut(s) | 1056 |
| PspOMI | GGGCCC | 6 cut(s) | 646, 912, 959, 996, 1142, 1230 |
| PspPPI | RGGWCCY | 1 cut(s) | 391 |
| PspXI | VCTCGAGB | 1 cut(s) | 1210 |
| PstNI | CAGNNNCTG | 1 cut(s) | 394 |
| PteI | GCGCGC | 2 cut(s) | 1081, 1298 |
| PvuI | CGATCG | 2 cut(s) | 3215, 3373 |
| RsaI | GTAC | 4 cut(s) | 605, 2008, 2033, 4369 |
| RsaNI | GTAC | 4 cut(s) | 604, 2007, 2032, 4368 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1750, 2370, 3199, 3759, 4352 |
| Rsr2I | CGGWCCG | 1 cut(s) | 624 |
| RsrII | CGGWCCG | 1 cut(s) | 624 |
| SacI | GAGCTC | 3 cut(s) | 819, 1133, 1350 |
| SalI | GTCGAC | 1 cut(s) | 4026 |
| SatI | GCNGC | 3 cut(s) | 2822, 2825, 2882 |
| SchI | GAGTC | 3 cut(s) | 548, 1230, 4023 |
| SfaNI | GCATC | 5 cut(s) | 2893, 3055, 3293, 3326, 4418 |
| SfcI | CTRYAG | 1 cut(s) | 795 |
| Sfr274I | CTCGAG | 2 cut(s) | 723, 1210 |
| SfuI | TTCGAA | 2 cut(s) | 1100, 2936 |
| SinI | GGWCC | 9 cut(s) | 391, 421, 538, 624, 947, 1218, 1262, 3148, 3980 |
| SlaI | CTCGAG | 2 cut(s) | 723, 1210 |
| SmaI | CCCGGG | 1 cut(s) | 645 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1750, 2370, 3199, 3759, 4352 |
| SmlI | CTYRAG | 4 cut(s) | 723, 1210, 1573, 2108 |
| SmoI | CTYRAG | 4 cut(s) | 723, 1210, 1573, 2108 |
| SphI | GCATGC | 1 cut(s) | 4390 |
| SseBI | AGGCCT | 1 cut(s) | 1359 |
| SsiI | CCGC | 8 cut(s) | 632, 678, 989, 2447, 2660, 2739, 3173, 3443 |
| SstI | GAGCTC | 3 cut(s) | 819, 1133, 1350 |
| StuI | AGGCCT | 1 cut(s) | 1359 |
| StyI | CCWWGG | 6 cut(s) | 1109, 1326, 2318, 2742, 2919, 3983 |
| TaiI | ACGT | 7 cut(s) | 197, 922, 1152, 1689, 2756, 3947, 4027 |
| TatI | WGTACW | 3 cut(s) | 603, 2006, 2031 |
| TfiI | GAWTC | 9 cut(s) | 7, 17, 1756, 3470, 3659, 3683, 3791, 3871, 4505 |
| TscAI | CASTG | 3 cut(s) | 743, 817, 3873 |
| TseFI | GTSAC | 9 cut(s) | 613, 1056, 1421, 1762, 1805, 2016, 2243, 3778, 4156 |
| TseI | GCWGC | 3 cut(s) | 2821, 2824, 2881 |
| Tsp45I | GTSAC | 9 cut(s) | 613, 1056, 1421, 1762, 1805, 2016, 2243, 3778, 4156 |
| TspGWI | ACGGA | 3 cut(s) | 1492, 1671, 3989 |
| TspMI | CCCGGG | 1 cut(s) | 643 |
| TspRI | CASTG | 3 cut(s) | 743, 817, 3873 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 956, 1227, 2529 |
| VpaK11BI | GGWCC | 9 cut(s) | 391, 421, 538, 624, 947, 1218, 1262, 3148, 3980 |
| VspI | ATTAAT | 3 cut(s) | 348, 1487, 3291 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1210 |
| XceI | RCATGY | 9 cut(s) | 54, 1468, 1700, 1704, 1773, 1856, 3266, 4019, 4390 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2863 |
| XhoI | CTCGAG | 2 cut(s) | 723, 1210 |
| XmaI | CCCGGG | 1 cut(s) | 643 |
| XmaJI | CCTAGG | 1 cut(s) | 2318 |
| XmiI | GTMKAC | 2 cut(s) | 1461, 4027 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1518 |
| ZraI | GACGTC | 2 cut(s) | 920, 1150 |
| Zsp2I | ATGCAT | 4 cut(s) | 1702, 3319, 3756, 4433 |