Retrotransposon gag protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 132 |
| Acc36I | ACCTGC | 2 cut(s) | 132, 301 |
| AccB1I | GGYRCC | 1 cut(s) | 646 |
| AciI | CCGC | 3 cut(s) | 47, 445, 546 |
| AclWI | GGATC | 5 cut(s) | 149, 162, 231, 307, 324 |
| AfaI | GTAC | 2 cut(s) | 51, 428 |
| AgsI | TTSAA | 5 cut(s) | 25, 136, 326, 393, 442 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AleI | CACNNNNGTG | 1 cut(s) | 657 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 139, 171 |
| AluBI | AGCT | 8 cut(s) | 86, 93, 100, 332, 455, 479, 560, 611 |
| AluI | AGCT | 8 cut(s) | 86, 93, 100, 332, 455, 479, 560, 611 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| AlwI | GGATC | 5 cut(s) | 149, 162, 231, 307, 324 |
| ApeKI | GCWGC | 2 cut(s) | 365, 611 |
| AsuHPI | GGTGA | 3 cut(s) | 61, 92, 113 |
| BamHI | GGATCC | 1 cut(s) | 154 |
| BanI | GGYRCC | 1 cut(s) | 646 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BbvI | GCAGC | 2 cut(s) | 377, 598 |
| BccI | CCATC | 1 cut(s) | 492 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BclI | TGATCA | 1 cut(s) | 186 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BfuAI | ACCTGC | 2 cut(s) | 132, 301 |
| BisI | GCNGC | 3 cut(s) | 366, 546, 612 |
| BlsI | GCNGC | 3 cut(s) | 367, 547, 613 |
| BmcAI | AGTACT | 1 cut(s) | 428 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| BmiI | GGNNCC | 2 cut(s) | 156, 648 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmsI | GCATC | 4 cut(s) | 75, 120, 393, 532 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 159 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 549, 579 |
| Bse8I | GATNNNNATC | 1 cut(s) | 159 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseGI | GGATG | 2 cut(s) | 111, 204 |
| BseJI | GATNNNNATC | 1 cut(s) | 159 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseRI | GAGGAG | 2 cut(s) | 356, 570 |
| BseXI | GCAGC | 2 cut(s) | 377, 598 |
| BshNI | GGYRCC | 1 cut(s) | 646 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| BslFI | GGGAC | 1 cut(s) | 447 |
| BsmFI | GGGAC | 1 cut(s) | 447 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp143I | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| BspACI | CCGC | 3 cut(s) | 47, 445, 546 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspHI | TCATGA | 1 cut(s) | 589 |
| BspLI | GGNNCC | 2 cut(s) | 156, 648 |
| BspMAI | CTGCAG | 1 cut(s) | 298 |
| BspMI | ACCTGC | 2 cut(s) | 132, 301 |
| BspPI | GGATC | 5 cut(s) | 149, 162, 231, 307, 324 |
| BspT107I | GGYRCC | 1 cut(s) | 646 |
| BssMI | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 607 |
| Bst6I | CTCTTC | 1 cut(s) | 373 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 2 cut(s) | 240, 370 |
| BstDEI | CTNAG | 4 cut(s) | 129, 150, 360, 621 |
| BstF5I | GGATG | 2 cut(s) | 111, 204 |
| BstKTI | GATC | 7 cut(s) | 157, 189, 226, 302, 319, 529, 589 |
| BstMBI | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 44, 362 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 2 cut(s) | 377, 598 |
| BstX2I | RGATCY | 2 cut(s) | 154, 299 |
| BstYI | RGATCY | 2 cut(s) | 154, 299 |
| BtsCI | GGATG | 2 cut(s) | 111, 204 |
| BveI | ACCTGC | 2 cut(s) | 132, 301 |
| Cac8I | GCNNGC | 2 cut(s) | 240, 370 |
| CciI | TCATGA | 1 cut(s) | 589 |
| Csp6I | GTAC | 2 cut(s) | 50, 427 |
| CviAII | CATG | 6 cut(s) | 173, 184, 227, 312, 459, 590 |
| CviQI | GTAC | 2 cut(s) | 50, 427 |
| DdeI | CTNAG | 4 cut(s) | 129, 150, 360, 621 |
| DpnI | GATC | 7 cut(s) | 156, 188, 225, 301, 318, 528, 588 |
| DpnII | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| Eam1104I | CTCTTC | 1 cut(s) | 373 |
| EarI | CTCTTC | 1 cut(s) | 373 |
| Ecl136II | GAGCTC | 1 cut(s) | 100 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco53kI | GAGCTC | 1 cut(s) | 100 |
| EcoICRI | GAGCTC | 1 cut(s) | 100 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| FaeI | CATG | 6 cut(s) | 176, 187, 230, 315, 462, 593 |
| FaqI | GGGAC | 1 cut(s) | 447 |
| FatI | CATG | 6 cut(s) | 172, 183, 226, 311, 458, 589 |
| FbaI | TGATCA | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 3 cut(s) | 366, 546, 612 |
| FokI | GGATG | 2 cut(s) | 98, 211 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 3 cut(s) | 366, 546, 612 |
| GluI | GCNGC | 3 cut(s) | 366, 546, 612 |
| Hin1II | CATG | 6 cut(s) | 176, 187, 230, 315, 462, 593 |
| HincII | GTYRAC | 1 cut(s) | 33 |
| HindII | GTYRAC | 1 cut(s) | 33 |
| HindIII | AAGCTT | 2 cut(s) | 91, 330 |
| HinfI | GANTC | 3 cut(s) | 13, 413, 438 |
| HphI | GGTGA | 3 cut(s) | 61, 92, 113 |
| Hpy166II | GTNNAC | 2 cut(s) | 33, 568 |
| Hpy188I | TCNGA | 1 cut(s) | 526 |
| Hpy188III | TCNNGA | 1 cut(s) | 590 |
| Hpy8I | GTNNAC | 2 cut(s) | 33, 568 |
| HpyAV | CCTTC | 5 cut(s) | 19, 125, 254, 258, 503 |
| HpyCH4III | ACNGT | 1 cut(s) | 607 |
| HpyCH4V | TGCA | 5 cut(s) | 66, 296, 406, 519, 581 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 44, 362 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 150, 360, 621 |
| Hsp92II | CATG | 6 cut(s) | 176, 187, 230, 315, 462, 593 |
| Ksp22I | TGATCA | 1 cut(s) | 186 |
| Kzo9I | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| LmnI | GCTCC | 1 cut(s) | 557 |
| LpnPI | CCDG | 8 cut(s) | 63, 90, 93, 137, 219, 282, 306, 366 |
| Lsp1109I | GCAGC | 2 cut(s) | 377, 598 |
| LweI | GCATC | 4 cut(s) | 75, 120, 393, 532 |
| MalI | GATC | 7 cut(s) | 156, 188, 225, 301, 318, 528, 588 |
| MboI | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| MboII | GAAGA | 3 cut(s) | 155, 390, 479 |
| MflI | RGATCY | 2 cut(s) | 154, 299 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 2 cut(s) | 593, 625 |
| MnlI | CCTC | 5 cut(s) | 145, 214, 334, 548, 626 |
| MslI | CAYNNNNRTG | 2 cut(s) | 171, 657 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 44, 362 |
| NdeII | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| NlaIII | CATG | 6 cut(s) | 176, 187, 230, 315, 462, 593 |
| NlaIV | GGNNCC | 2 cut(s) | 156, 648 |
| OliI | CACNNNNGTG | 1 cut(s) | 657 |
| PagI | TCATGA | 1 cut(s) | 589 |
| PaqCI | CACCTGC | 1 cut(s) | 132 |
| PfeI | GAWTC | 3 cut(s) | 13, 413, 438 |
| PkrI | GCNGC | 3 cut(s) | 367, 547, 613 |
| Psp124BI | GAGCTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 2 cut(s) | 156, 648 |
| PstI | CTGCAG | 1 cut(s) | 298 |
| PsuI | RGATCY | 2 cut(s) | 154, 299 |
| RsaI | GTAC | 2 cut(s) | 51, 428 |
| RsaNI | GTAC | 2 cut(s) | 50, 427 |
| RseI | CAYNNNNRTG | 2 cut(s) | 171, 657 |
| SacI | GAGCTC | 1 cut(s) | 102 |
| SatI | GCNGC | 3 cut(s) | 366, 546, 612 |
| Sau3AI | GATC | 7 cut(s) | 154, 186, 223, 299, 316, 526, 586 |
| SbfI | CCTGCAGG | 1 cut(s) | 298 |
| ScaI | AGTACT | 1 cut(s) | 428 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SdaI | CCTGCAGG | 1 cut(s) | 298 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SfaNI | GCATC | 4 cut(s) | 75, 120, 393, 532 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 171, 657 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 298 |
| Sse9I | AATT | 2 cut(s) | 593, 625 |
| SsiI | CCGC | 3 cut(s) | 47, 445, 546 |
| SstI | GAGCTC | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| TaaI | ACNGT | 1 cut(s) | 607 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TasI | AATT | 2 cut(s) | 593, 625 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TauI | GCSGC | 1 cut(s) | 548 |
| TfiI | GAWTC | 3 cut(s) | 13, 413, 438 |
| TseI | GCWGC | 2 cut(s) | 365, 611 |
| TspDTI | ATGAA | 6 cut(s) | 107, 155, 215, 447, 522, 606 |
| ZrmI | AGTACT | 1 cut(s) | 428 |