transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 93 |
| AfaI | GTAC | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 13 |
| AgsI | TTSAA | 2 cut(s) | 43, 235 |
| AoxI | GGCC | 2 cut(s) | 108, 151 |
| AspS9I | GGNCC | 2 cut(s) | 4, 151 |
| AsuII | TTCGAA | 1 cut(s) | 75 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| AxyI | CCTNAGG | 1 cut(s) | 324 |
| BccI | CCATC | 1 cut(s) | 202 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 151 |
| BmsI | GCATC | 1 cut(s) | 58 |
| Bpu14I | TTCGAA | 1 cut(s) | 75 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 13 |
| Bse21I | CCTNAGG | 1 cut(s) | 324 |
| BseGI | GGATG | 2 cut(s) | 301, 319 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BseYI | CCCAGC | 1 cut(s) | 17 |
| BsgI | GTGCAG | 1 cut(s) | 221 |
| BshFI | GGCC | 2 cut(s) | 110, 153 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 13 |
| BsnI | GGCC | 2 cut(s) | 110, 153 |
| Bsp119I | TTCGAA | 1 cut(s) | 75 |
| BspANI | GGCC | 2 cut(s) | 110, 153 |
| BspT104I | TTCGAA | 1 cut(s) | 75 |
| Bst6I | CTCTTC | 1 cut(s) | 194 |
| BstBI | TTCGAA | 1 cut(s) | 75 |
| BstDEI | CTNAG | 3 cut(s) | 84, 105, 324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 11 |
| BstF5I | GGATG | 2 cut(s) | 301, 319 |
| Bsu36I | CCTNAGG | 1 cut(s) | 324 |
| BsuRI | GGCC | 2 cut(s) | 110, 153 |
| BtgZI | GCGATG | 1 cut(s) | 233 |
| BtsCI | GGATG | 2 cut(s) | 301, 319 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 151 |
| Csp6I | GTAC | 1 cut(s) | 299 |
| CviAII | CATG | 2 cut(s) | 116, 284 |
| CviJI | RGCY | 5 cut(s) | 17, 22, 110, 153, 259 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 22, 110, 153, 259 |
| CviQI | GTAC | 1 cut(s) | 299 |
| DdeI | CTNAG | 3 cut(s) | 84, 105, 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 194 |
| EarI | CTCTTC | 1 cut(s) | 194 |
| Eco147I | AGGCCT | 1 cut(s) | 110 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco81I | CCTNAGG | 1 cut(s) | 324 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 11 |
| FaeI | CATG | 2 cut(s) | 119, 287 |
| FaiI | YATR | 5 cut(s) | 27, 93, 117, 267, 285 |
| FatI | CATG | 2 cut(s) | 115, 283 |
| FokI | GGATG | 2 cut(s) | 306, 308 |
| GsaI | CCCAGC | 1 cut(s) | 21 |
| HaeIII | GGCC | 2 cut(s) | 110, 153 |
| Hin1II | CATG | 2 cut(s) | 119, 287 |
| HinfI | GANTC | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 1 cut(s) | 215 |
| Hpy8I | GTNNAC | 1 cut(s) | 215 |
| HpyAV | CCTTC | 2 cut(s) | 121, 286 |
| HpyCH4V | TGCA | 1 cut(s) | 202 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 105, 324 |
| Hsp92II | CATG | 2 cut(s) | 119, 287 |
| LmnI | GCTCC | 1 cut(s) | 280 |
| LpnPI | CCDG | 3 cut(s) | 3, 167, 207 |
| LweI | GCATC | 1 cut(s) | 58 |
| MaeIII | GTNAC | 1 cut(s) | 224 |
| MboII | GAAGA | 1 cut(s) | 181 |
| MfeI | CAATTG | 1 cut(s) | 38 |
| MluCI | AATT | 2 cut(s) | 32, 38 |
| MmeI | TCCRAC | 1 cut(s) | 30 |
| MnlI | CCTC | 4 cut(s) | 7, 46, 262, 314 |
| MseI | TTAA | 2 cut(s) | 183, 331 |
| MunI | CAATTG | 1 cut(s) | 38 |
| NlaIII | CATG | 2 cut(s) | 119, 287 |
| NspV | TTCGAA | 1 cut(s) | 75 |
| PceI | AGGCCT | 1 cut(s) | 110 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PsiI | TTATAA | 1 cut(s) | 93 |
| PspFI | CCCAGC | 1 cut(s) | 17 |
| PspPI | GGNCC | 2 cut(s) | 4, 151 |
| RsaI | GTAC | 1 cut(s) | 300 |
| RsaNI | GTAC | 1 cut(s) | 299 |
| SaqAI | TTAA | 2 cut(s) | 183, 331 |
| Sau96I | GGNCC | 2 cut(s) | 4, 151 |
| SetI | ASST | 2 cut(s) | 9, 226 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SfuI | TTCGAA | 1 cut(s) | 75 |
| SgeI | CNNG | 9 cut(s) | 20, 30, 128, 143, 166, 189, 234, 241, 296 |
| SinI | GGWCC | 1 cut(s) | 4 |
| Sse9I | AATT | 2 cut(s) | 32, 38 |
| SseBI | AGGCCT | 1 cut(s) | 110 |
| StuI | AGGCCT | 1 cut(s) | 110 |
| TaqI | TCGA | 1 cut(s) | 75 |
| TasI | AATT | 2 cut(s) | 32, 38 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 2 cut(s) | 183, 331 |
| Tru9I | TTAA | 2 cut(s) | 183, 331 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 11 |