transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 275 |
| Acc36I | ACCTGC | 1 cut(s) | 744 |
| Acc65I | GGTACC | 1 cut(s) | 503 |
| AccB1I | GGYRCC | 1 cut(s) | 503 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AclI | AACGTT | 1 cut(s) | 1379 |
| AclWI | GGATC | 3 cut(s) | 583, 596, 1119 |
| AcoI | YGGCCR | 2 cut(s) | 130, 1351 |
| AcsI | RAATTY | 2 cut(s) | 605, 1337 |
| AcyI | GRCGYC | 2 cut(s) | 272, 1176 |
| AfaI | GTAC | 4 cut(s) | 505, 545, 1001, 1407 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 700 |
| AflII | CTTAAG | 1 cut(s) | 661 |
| AgsI | TTSAA | 5 cut(s) | 53, 541, 617, 829, 1342 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 711, 743 |
| AleI | CACNNNNGTG | 1 cut(s) | 104 |
| AluBI | AGCT | 8 cut(s) | 65, 256, 353, 454, 536, 890, 1082, 1304 |
| AluI | AGCT | 8 cut(s) | 65, 256, 353, 454, 536, 890, 1082, 1304 |
| Alw21I | GWGCWC | 3 cut(s) | 456, 678, 1077 |
| Alw26I | GTCTC | 5 cut(s) | 40, 175, 698, 901, 1427 |
| Alw44I | GTGCAC | 1 cut(s) | 674 |
| AlwI | GGATC | 3 cut(s) | 583, 596, 1119 |
| AoxI | GGCC | 2 cut(s) | 130, 1351 |
| ApaLI | GTGCAC | 1 cut(s) | 674 |
| ApeKI | GCWGC | 1 cut(s) | 533 |
| ApoI | RAATTY | 2 cut(s) | 605, 1337 |
| Asp718I | GGTACC | 1 cut(s) | 503 |
| AspS9I | GGNCC | 2 cut(s) | 303, 957 |
| AsuHPI | GGTGA | 2 cut(s) | 523, 860 |
| AvaII | GGWCC | 2 cut(s) | 303, 957 |
| BaeGI | GKGCMC | 1 cut(s) | 678 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BalI | TGGCCA | 2 cut(s) | 132, 1353 |
| BamHI | GGATCC | 1 cut(s) | 588 |
| BanI | GGYRCC | 1 cut(s) | 503 |
| BanII | GRGCYC | 1 cut(s) | 456 |
| BbsI | GAAGAC | 2 cut(s) | 690, 1250 |
| Bbv12I | GWGCWC | 3 cut(s) | 456, 678, 1077 |
| BbvCI | CCTCAGC | 1 cut(s) | 891 |
| BbvI | GCAGC | 1 cut(s) | 545 |
| BccI | CCATC | 4 cut(s) | 398, 579, 779, 1362 |
| BcoDI | GTCTC | 5 cut(s) | 40, 175, 698, 901, 1427 |
| BfaI | CTAG | 4 cut(s) | 23, 42, 768, 1115 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BfrI | CTTAAG | 1 cut(s) | 661 |
| BfuAI | ACCTGC | 1 cut(s) | 744 |
| BisI | GCNGC | 1 cut(s) | 534 |
| BlsI | GCNGC | 1 cut(s) | 535 |
| BmcAI | AGTACT | 1 cut(s) | 545 |
| Bme18I | GGWCC | 2 cut(s) | 303, 957 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1265 |
| BmgT120I | GGNCC | 2 cut(s) | 303, 957 |
| BmiI | GGNNCC | 3 cut(s) | 505, 590, 793 |
| BmsI | GCATC | 3 cut(s) | 319, 409, 964 |
| BpiI | GAAGAC | 2 cut(s) | 690, 1250 |
| BpmI | CTGGAG | 1 cut(s) | 279 |
| Bpu10I | CCTNAGC | 2 cut(s) | 66, 891 |
| BpuEI | CTTGAG | 4 cut(s) | 242, 388, 497, 1346 |
| BsaHI | GRCGYC | 2 cut(s) | 272, 1176 |
| BsaI | GGTCTC | 2 cut(s) | 175, 901 |
| BsaJI | CCNNGG | 2 cut(s) | 507, 572 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 700 |
| Bse1I | ACTGG | 1 cut(s) | 736 |
| BseDI | CCNNGG | 2 cut(s) | 507, 572 |
| BseGI | GGATG | 3 cut(s) | 214, 979, 1408 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BseMII | CTCAG | 1 cut(s) | 882 |
| BseNI | ACTGG | 1 cut(s) | 736 |
| BseRI | GAGGAG | 1 cut(s) | 1175 |
| BseSI | GKGCMC | 1 cut(s) | 678 |
| BseXI | GCAGC | 1 cut(s) | 545 |
| BsgI | GTGCAG | 1 cut(s) | 1328 |
| BshFI | GGCC | 2 cut(s) | 132, 1353 |
| BshNI | GGYRCC | 1 cut(s) | 503 |
| BsiHKAI | GWGCWC | 3 cut(s) | 456, 678, 1077 |
| BslFI | GGGAC | 2 cut(s) | 1006, 1272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 700 |
| BsmAI | GTCTC | 5 cut(s) | 40, 175, 698, 901, 1427 |
| BsmBI | CGTCTC | 1 cut(s) | 698 |
| BsmFI | GGGAC | 2 cut(s) | 1006, 1272 |
| BsmI | GAATGC | 1 cut(s) | 1217 |
| BsnI | GGCC | 2 cut(s) | 132, 1353 |
| Bso31I | GGTCTC | 2 cut(s) | 175, 901 |
| Bsp1286I | GDGCHC | 3 cut(s) | 456, 678, 1077 |
| Bsp143I | GATC | 3 cut(s) | 119, 588, 1111 |
| BspANI | GGCC | 2 cut(s) | 132, 1353 |
| BspCNI | CTCAG | 1 cut(s) | 883 |
| BspLI | GGNNCC | 3 cut(s) | 505, 590, 793 |
| BspMI | ACCTGC | 1 cut(s) | 744 |
| BspPI | GGATC | 3 cut(s) | 583, 596, 1119 |
| BspT107I | GGYRCC | 1 cut(s) | 503 |
| BspTI | CTTAAG | 1 cut(s) | 661 |
| BspTNI | GGTCTC | 2 cut(s) | 175, 901 |
| BsrI | ACTGG | 1 cut(s) | 736 |
| BssECI | CCNNGG | 2 cut(s) | 507, 572 |
| BssMI | GATC | 3 cut(s) | 119, 588, 1111 |
| BssNI | GRCGYC | 2 cut(s) | 272, 1176 |
| BssT1I | CCWWGG | 2 cut(s) | 507, 572 |
| Bst4CI | ACNGT | 1 cut(s) | 934 |
| Bst6I | CTCTTC | 1 cut(s) | 43 |
| BstACI | GRCGYC | 2 cut(s) | 272, 1176 |
| BstAFI | CTTAAG | 1 cut(s) | 661 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1050 |
| BstC8I | GCNNGC | 3 cut(s) | 678, 764, 888 |
| BstDEI | CTNAG | 3 cut(s) | 66, 891, 1212 |
| BstF5I | GGATG | 3 cut(s) | 214, 979, 1408 |
| BstKTI | GATC | 3 cut(s) | 122, 591, 1114 |
| BstMAI | GTCTC | 5 cut(s) | 40, 175, 698, 901, 1427 |
| BstMBI | GATC | 3 cut(s) | 119, 588, 1111 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 350, 759, 983, 1050, 1088 |
| BstNSI | RCATGY | 1 cut(s) | 766 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstSLI | GKGCMC | 1 cut(s) | 678 |
| BstV1I | GCAGC | 1 cut(s) | 545 |
| BstV2I | GAAGAC | 2 cut(s) | 690, 1250 |
| BstX2I | RGATCY | 2 cut(s) | 588, 1111 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 881 |
| BstYI | RGATCY | 2 cut(s) | 588, 1111 |
| BsuRI | GGCC | 2 cut(s) | 132, 1353 |
| BtgZI | GCGATG | 1 cut(s) | 1340 |
| BtsCI | GGATG | 3 cut(s) | 214, 979, 1408 |
| BveI | ACCTGC | 1 cut(s) | 744 |
| Cac8I | GCNNGC | 3 cut(s) | 678, 764, 888 |
| Cfr13I | GGNCC | 2 cut(s) | 303, 957 |
| CseI | GACGC | 1 cut(s) | 1184 |
| Csp6I | GTAC | 4 cut(s) | 504, 544, 1000, 1406 |
| CviAII | CATG | 6 cut(s) | 134, 530, 763, 1108, 1223, 1391 |
| CviQI | GTAC | 4 cut(s) | 504, 544, 1000, 1406 |
| DdeI | CTNAG | 3 cut(s) | 66, 891, 1212 |
| DpnI | GATC | 3 cut(s) | 121, 590, 1113 |
| DpnII | GATC | 3 cut(s) | 119, 588, 1111 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1265 |
| EaeI | YGGCCR | 2 cut(s) | 130, 1351 |
| Eam1104I | CTCTTC | 1 cut(s) | 43 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1265 |
| EarI | CTCTTC | 1 cut(s) | 43 |
| Ecl136II | GAGCTC | 1 cut(s) | 454 |
| Eco130I | CCWWGG | 2 cut(s) | 507, 572 |
| Eco24I | GRGCYC | 1 cut(s) | 456 |
| Eco31I | GGTCTC | 2 cut(s) | 175, 901 |
| Eco47I | GGWCC | 2 cut(s) | 303, 957 |
| Eco53kI | GAGCTC | 1 cut(s) | 454 |
| EcoICRI | GAGCTC | 1 cut(s) | 454 |
| EcoRI | GAATTC | 1 cut(s) | 1337 |
| EcoT14I | CCWWGG | 2 cut(s) | 507, 572 |
| EcoT38I | GRGCYC | 1 cut(s) | 456 |
| ErhI | CCWWGG | 2 cut(s) | 507, 572 |
| Esp3I | CGTCTC | 1 cut(s) | 698 |
| FaeI | CATG | 6 cut(s) | 137, 533, 766, 1111, 1226, 1394 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 441, 473 |
| FaqI | GGGAC | 2 cut(s) | 1006, 1272 |
| FatI | CATG | 6 cut(s) | 133, 529, 762, 1107, 1222, 1390 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 1 cut(s) | 534 |
| FokI | GGATG | 3 cut(s) | 221, 986, 1415 |
| FriOI | GRGCYC | 1 cut(s) | 456 |
| Fsp4HI | GCNGC | 1 cut(s) | 534 |
| FspBI | CTAG | 4 cut(s) | 23, 42, 768, 1115 |
| GluI | GCNGC | 1 cut(s) | 534 |
| GsuI | CTGGAG | 1 cut(s) | 279 |
| HaeIII | GGCC | 2 cut(s) | 132, 1353 |
| HgaI | GACGC | 1 cut(s) | 1184 |
| Hin1I | GRCGYC | 2 cut(s) | 272, 1176 |
| Hin1II | CATG | 6 cut(s) | 137, 533, 766, 1111, 1226, 1394 |
| HindIII | AAGCTT | 1 cut(s) | 1080 |
| HinfI | GANTC | 5 cut(s) | 409, 732, 937, 1006, 1234 |
| HphI | GGTGA | 2 cut(s) | 523, 860 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 676, 1322 |
| Hpy188I | TCNGA | 2 cut(s) | 337, 414 |
| Hpy188III | TCNNGA | 7 cut(s) | 180, 239, 296, 713, 826, 905, 1115 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 676, 1322 |
| HpyAV | CCTTC | 3 cut(s) | 364, 553, 625 |
| HpyCH4III | ACNGT | 1 cut(s) | 934 |
| HpyCH4IV | ACGT | 5 cut(s) | 272, 612, 645, 707, 1379 |
| HpyCH4V | TGCA | 9 cut(s) | 137, 344, 422, 461, 533, 676, 804, 1150, 1309 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 350, 759, 983, 1050, 1088 |
| HpyF3I | CTNAG | 3 cut(s) | 66, 891, 1212 |
| HpySE526I | ACGT | 5 cut(s) | 272, 612, 645, 707, 1379 |
| Hsp92I | GRCGYC | 2 cut(s) | 272, 1176 |
| Hsp92II | CATG | 6 cut(s) | 137, 533, 766, 1111, 1226, 1394 |
| KpnI | GGTACC | 1 cut(s) | 507 |
| Kzo9I | GATC | 3 cut(s) | 119, 588, 1111 |
| LmnI | GCTCC | 4 cut(s) | 350, 459, 1072, 1387 |
| Lsp1109I | GCAGC | 1 cut(s) | 545 |
| LweI | GCATC | 3 cut(s) | 319, 409, 964 |
| MaeI | CTAG | 4 cut(s) | 23, 42, 768, 1115 |
| MaeII | ACGT | 5 cut(s) | 272, 612, 645, 707, 1379 |
| MaeIII | GTNAC | 3 cut(s) | 83, 841, 1331 |
| MalI | GATC | 3 cut(s) | 121, 590, 1113 |
| MboI | GATC | 3 cut(s) | 119, 588, 1111 |
| MboII | GAAGA | 4 cut(s) | 30, 695, 841, 1255 |
| MfeI | CAATTG | 1 cut(s) | 1145 |
| MflI | RGATCY | 2 cut(s) | 588, 1111 |
| MhlI | GDGCHC | 3 cut(s) | 456, 678, 1077 |
| MlsI | TGGCCA | 2 cut(s) | 132, 1353 |
| MluCI | AATT | 6 cut(s) | 48, 605, 777, 1032, 1145, 1337 |
| MluNI | TGGCCA | 2 cut(s) | 132, 1353 |
| MlyI | GAGTC | 2 cut(s) | 403, 1000 |
| MmeI | TCCRAC | 2 cut(s) | 328, 1050 |
| Mox20I | TGGCCA | 2 cut(s) | 132, 1353 |
| MscI | TGGCCA | 2 cut(s) | 132, 1353 |
| MseI | TTAA | 4 cut(s) | 662, 1104, 1290, 1438 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 1016 |
| Msp20I | TGGCCA | 2 cut(s) | 132, 1353 |
| MspA1I | CMGCKG | 1 cut(s) | 1304 |
| MspCI | CTTAAG | 1 cut(s) | 661 |
| MunI | CAATTG | 1 cut(s) | 1145 |
| Mva1269I | GAATGC | 1 cut(s) | 1217 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 350, 759, 983, 1050, 1088 |
| NdeII | GATC | 3 cut(s) | 119, 588, 1111 |
| NlaIII | CATG | 6 cut(s) | 137, 533, 766, 1111, 1226, 1394 |
| NlaIV | GGNNCC | 3 cut(s) | 505, 590, 793 |
| NspI | RCATGY | 1 cut(s) | 766 |
| OliI | CACNNNNGTG | 1 cut(s) | 104 |
| PaeI | GCATGC | 1 cut(s) | 766 |
| PctI | GAATGC | 1 cut(s) | 1217 |
| PfeI | GAWTC | 3 cut(s) | 732, 937, 1234 |
| PkrI | GCNGC | 1 cut(s) | 535 |
| PleI | GAGTC | 2 cut(s) | 403, 1000 |
| PpsI | GAGTC | 2 cut(s) | 403, 1000 |
| Psp124BI | GAGCTC | 1 cut(s) | 456 |
| Psp1406I | AACGTT | 1 cut(s) | 1379 |
| PspN4I | GGNNCC | 3 cut(s) | 505, 590, 793 |
| PspPI | GGNCC | 2 cut(s) | 303, 957 |
| PsuI | RGATCY | 2 cut(s) | 588, 1111 |
| PvuII | CAGCTG | 1 cut(s) | 1304 |
| RsaI | GTAC | 4 cut(s) | 505, 545, 1001, 1407 |
| RsaNI | GTAC | 4 cut(s) | 504, 544, 1000, 1406 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 1016 |
| SacI | GAGCTC | 1 cut(s) | 456 |
| SaqAI | TTAA | 4 cut(s) | 662, 1104, 1290, 1438 |
| SatI | GCNGC | 1 cut(s) | 534 |
| Sau3AI | GATC | 3 cut(s) | 119, 588, 1111 |
| Sau96I | GGNCC | 2 cut(s) | 303, 957 |
| ScaI | AGTACT | 1 cut(s) | 545 |
| SchI | GAGTC | 2 cut(s) | 403, 1000 |
| SduI | GDGCHC | 3 cut(s) | 456, 678, 1077 |
| SfaNI | GCATC | 3 cut(s) | 319, 409, 964 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SinI | GGWCC | 2 cut(s) | 303, 957 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 1016 |
| SmlI | CTYRAG | 5 cut(s) | 257, 403, 476, 661, 1361 |
| SmoI | CTYRAG | 5 cut(s) | 257, 403, 476, 661, 1361 |
| SphI | GCATGC | 1 cut(s) | 766 |
| Sse9I | AATT | 6 cut(s) | 48, 605, 777, 1032, 1145, 1337 |
| SspMI | CTAG | 4 cut(s) | 23, 42, 768, 1115 |
| SstI | GAGCTC | 1 cut(s) | 456 |
| StyI | CCWWGG | 2 cut(s) | 507, 572 |
| TaaI | ACNGT | 1 cut(s) | 934 |
| TaiI | ACGT | 5 cut(s) | 275, 615, 648, 710, 1382 |
| TaqI | TCGA | 3 cut(s) | 118, 179, 1030 |
| TasI | AATT | 6 cut(s) | 48, 605, 777, 1032, 1145, 1337 |
| TatI | WGTACW | 1 cut(s) | 543 |
| TfiI | GAWTC | 3 cut(s) | 732, 937, 1234 |
| Tru1I | TTAA | 4 cut(s) | 662, 1104, 1290, 1438 |
| Tru9I | TTAA | 4 cut(s) | 662, 1104, 1290, 1438 |
| TseI | GCWGC | 1 cut(s) | 533 |
| TspDTI | ATGAA | 2 cut(s) | 732, 1389 |
| Vha464I | CTTAAG | 1 cut(s) | 661 |
| VneI | GTGCAC | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 2 cut(s) | 303, 957 |
| XapI | RAATTY | 2 cut(s) | 605, 1337 |
| XbaI | TCTAGA | 1 cut(s) | 1114 |
| XceI | RCATGY | 1 cut(s) | 766 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XspI | CTAG | 4 cut(s) | 23, 42, 768, 1115 |
| ZraI | GACGTC | 1 cut(s) | 273 |
| ZrmI | AGTACT | 1 cut(s) | 545 |