transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotrans_gag | PF03732 | 82 - 124 | 5.3e-06 | Retrotransposon gag protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 282 |
| AcsI | RAATTY | 1 cut(s) | 381 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 38, 77, 83, 282 |
| AgsI | TTSAA | 1 cut(s) | 238 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AluBI | AGCT | 2 cut(s) | 221, 295 |
| AluI | AGCT | 2 cut(s) | 221, 295 |
| Alw26I | GTCTC | 1 cut(s) | 2 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApeKI | GCWGC | 2 cut(s) | 47, 295 |
| ApoI | RAATTY | 1 cut(s) | 381 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 248 |
| AspLEI | GCGC | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 212 |
| BbsI | GAAGAC | 1 cut(s) | 165 |
| BbvI | GCAGC | 2 cut(s) | 34, 282 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BcoDI | GTCTC | 1 cut(s) | 2 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BisI | GCNGC | 2 cut(s) | 48, 296 |
| BlsI | GCNGC | 2 cut(s) | 49, 297 |
| Bme1390I | CCNGG | 1 cut(s) | 78 |
| BmrFI | CCNGG | 1 cut(s) | 78 |
| BmsI | GCATC | 2 cut(s) | 133, 181 |
| BpiI | GAAGAC | 1 cut(s) | 165 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 173, 203 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 38, 77, 83, 282 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseGI | GGATG | 2 cut(s) | 153, 333 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 38, 77, 83, 282 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseRI | GAGGAG | 1 cut(s) | 391 |
| BseSI | GKGCMC | 1 cut(s) | 212 |
| BseXI | GCAGC | 2 cut(s) | 34, 282 |
| BseYI | CCCAGC | 1 cut(s) | 302 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BslFI | GGGAC | 1 cut(s) | 319 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 38, 77, 83, 282 |
| BsmAI | GTCTC | 1 cut(s) | 2 |
| BsmFI | GGGAC | 1 cut(s) | 319 |
| BsmI | GAATGC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 1 cut(s) | 300 |
| BstDEI | CTNAG | 1 cut(s) | 6 |
| BstF5I | GGATG | 2 cut(s) | 153, 333 |
| BstHHI | GCGC | 1 cut(s) | 52 |
| BstMAI | GTCTC | 1 cut(s) | 2 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 292 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstSCI | CCNGG | 1 cut(s) | 76 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstSLI | GKGCMC | 1 cut(s) | 212 |
| BstV1I | GCAGC | 2 cut(s) | 34, 282 |
| BstV2I | GAAGAC | 1 cut(s) | 165 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtsCI | GGATG | 2 cut(s) | 153, 333 |
| Cac8I | GCNNGC | 1 cut(s) | 300 |
| CfoI | GCGC | 1 cut(s) | 52 |
| CviAII | CATG | 2 cut(s) | 143, 373 |
| CviJI | RGCY | 7 cut(s) | 5, 88, 221, 275, 286, 295, 413 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 88, 221, 275, 286, 295, 413 |
| DdeI | CTNAG | 1 cut(s) | 6 |
| Eco32I | GATATC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoRV | GATATC | 1 cut(s) | 226 |
| EcoT22I | ATGCAT | 1 cut(s) | 62 |
| FaeI | CATG | 2 cut(s) | 146, 376 |
| FaiI | YATR | 4 cut(s) | 58, 144, 206, 374 |
| FaqI | GGGAC | 1 cut(s) | 319 |
| FatI | CATG | 2 cut(s) | 142, 372 |
| Fnu4HI | GCNGC | 2 cut(s) | 48, 296 |
| FokI | GGATG | 2 cut(s) | 160, 340 |
| Fsp4HI | GCNGC | 2 cut(s) | 48, 296 |
| GlaI | GCGC | 1 cut(s) | 51 |
| GluI | GCNGC | 2 cut(s) | 48, 296 |
| GsaI | CCCAGC | 1 cut(s) | 306 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HhaI | GCGC | 1 cut(s) | 52 |
| Hin1II | CATG | 2 cut(s) | 146, 376 |
| Hin6I | GCGC | 1 cut(s) | 50 |
| HinP1I | GCGC | 1 cut(s) | 50 |
| HinfI | GANTC | 1 cut(s) | 359 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 235 |
| HpyAV | CCTTC | 2 cut(s) | 238, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 3 cut(s) | 60, 124, 389 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 292 |
| HpyF3I | CTNAG | 1 cut(s) | 6 |
| Hsp92II | CATG | 2 cut(s) | 146, 376 |
| HspAI | GCGC | 1 cut(s) | 50 |
| LmnI | GCTCC | 1 cut(s) | 218 |
| LpnPI | CCDG | 6 cut(s) | 21, 63, 84, 90, 288, 312 |
| Lsp1109I | GCAGC | 2 cut(s) | 34, 282 |
| LweI | GCATC | 2 cut(s) | 133, 181 |
| MboII | GAAGA | 2 cut(s) | 170, 250 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MluCI | AATT | 3 cut(s) | 350, 381, 390 |
| MnlI | CCTC | 3 cut(s) | 76, 259, 369 |
| Mph1103I | ATGCAT | 1 cut(s) | 62 |
| MroXI | GAANNNNTTC | 1 cut(s) | 248 |
| MseI | TTAA | 3 cut(s) | 90, 107, 407 |
| MspR9I | CCNGG | 1 cut(s) | 78 |
| Mva1269I | GAATGC | 1 cut(s) | 248 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 292 |
| NlaIII | CATG | 2 cut(s) | 146, 376 |
| NsiI | ATGCAT | 1 cut(s) | 62 |
| PctI | GAATGC | 1 cut(s) | 248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 248 |
| PfeI | GAWTC | 1 cut(s) | 359 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 282 |
| PkrI | GCNGC | 2 cut(s) | 49, 297 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspFI | CCCAGC | 1 cut(s) | 302 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| SaqAI | TTAA | 3 cut(s) | 90, 107, 407 |
| SatI | GCNGC | 2 cut(s) | 48, 296 |
| ScrFI | CCNGG | 1 cut(s) | 78 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SetI | ASST | 4 cut(s) | 40, 132, 223, 297 |
| SfaNI | GCATC | 2 cut(s) | 133, 181 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 176 |
| SmoI | CTYRAG | 1 cut(s) | 176 |
| Sse9I | AATT | 3 cut(s) | 350, 381, 390 |
| StyD4I | CCNGG | 1 cut(s) | 76 |
| TaaI | ACNGT | 1 cut(s) | 24 |
| TaqI | TCGA | 1 cut(s) | 186 |
| TasI | AATT | 3 cut(s) | 350, 381, 390 |
| TfiI | GAWTC | 1 cut(s) | 359 |
| Tru1I | TTAA | 3 cut(s) | 90, 107, 407 |
| Tru9I | TTAA | 3 cut(s) | 90, 107, 407 |
| TseI | GCWGC | 2 cut(s) | 47, 295 |
| TspDTI | ATGAA | 3 cut(s) | 131, 257, 344 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 282 |
| XapI | RAATTY | 1 cut(s) | 381 |
| XmnI | GAANNNNTTC | 1 cut(s) | 248 |
| Zsp2I | ATGCAT | 1 cut(s) | 62 |