FvH4_4g27860

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000053
Physical Location & Seq
Forward (+)
28670298 .. 28672544
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27860.t1

Sequence Viewer

Length: 1023 bp
ATGTCTGTCTATGAGGAATATGATTCACACAACAAAACTTTGCTAACTCTTGCAAAGTTGGATTTCAACTTAATGCAGAAAGTCCATCAGAAAGAACTATGTGATATGACGAGGTGGTGGAAGGACTTGGACTTTGCAAACAAGGTATCTTTTTCAAGAGACAGAATCGTCGAGACCTACTTTTGGGCTTTGGCAACTATATTTGAACCTGAATATCACTTCGCTAGGACGATGGTATGCAAATATGGTGCTCTAACGACAGTCCAAGATGATGTTTACGATGTCTATGGCTCATATCAAGAACTAGAGCTCTATACAGATGCTATTGAGAGGTGGGACATTTCTGCTATTGATGATCAATTACCCCAGTGTTTGAAGGATTGTTATAAAGGACTGTTGGACAGCTACTCTGCATATGAAGAAAAGCTTGCGAAAGAAGGAATCTTATATCGCCTTGACTATGCCAAAGAAGCAATCAAAATTCAACTTAGAGGTTACTTCCAAGAAGCCAAATGGTTGAAGGAAAAATACACACCAACAATGGATGAATATATTCCAAATGGACTTAACTCATCCTTTTATCCGATGGCAATCACATCCTTTGTTGGAATGGGAGGTCTTGTTACAAAAGACACCATGGATTGGGTGTTGAATGACCCTAAGATTGTTAAGGCTACAACACTAACCGGCAGACTCCTCAATGACATGGCTGGCCACAAGTTTGAGCAAGACATAGAGCAGGGCGCCTCATCGGTGGAATGCTACATGAATCAATATGGTGTCACAGAAGAGGAAGCGAAAATCGAGCTGACTAAACAAAAGGATGATGCATGGAAAGACATAAACCAAGAGTGGCTCGATCTCCACTCCAGCAACAATATCCCCAAGCCCCTCCTGCAGATCATTTTGAATCTTGCACGTTCTGGTGAAGTTCTTTACAAGAATGAAGATCTCTATACCAACGCGGAAGCTGGACTCAAGGGTTTTATAGTTTCTCTCCTCATCGAACCGGTGCCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

341

Amino Acids

39.39

Weight (kDa)

4.73

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 41 - 280 3.2e-87 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 81 - 280 1.4e-49 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AasI GACNNNNNNGTC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 743, 1012
AccB7I CCANNNNNTGG 1 cut(s) 642
AccII CGCG 1 cut(s) 965
AciI CCGC 1 cut(s) 965
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 744
AfiI CCNNNNNNNGG 2 cut(s) 183, 642
AgeI ACCGGT 1 cut(s) 1009
AgsI TTSAA 8 cut(s) 67, 156, 206, 376, 485, 520, 652, 910
AluBI AGCT 5 cut(s) 310, 405, 427, 808, 971
AluI AGCT 5 cut(s) 310, 405, 427, 808, 971
Alw21I GWGCWC 2 cut(s) 253, 312
Alw26I GTCTC 2 cut(s) 153, 167
AoxI GGCC 1 cut(s) 712
ApoI RAATTY 1 cut(s) 480
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AsiGI ACCGGT 1 cut(s) 1009
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 746
AsuHPI GGTGA 1 cut(s) 938
BalI TGGCCA 1 cut(s) 714
BanI GGYRCC 2 cut(s) 743, 1012
BanII GRGCYC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
Bbv12I GWGCWC 2 cut(s) 253, 312
BccI CCATC 3 cut(s) 93, 226, 580
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 153, 167
BfaI CTAG 2 cut(s) 225, 305
BfmI CTRYAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 747
BglII AGATCT 1 cut(s) 949
BmiI GGNNCC 2 cut(s) 745, 1014
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 310, 817
BmuI ACTGGG 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 636
BsaWI WCCGGW 1 cut(s) 1009
BsaXI ACNNNNNCTCC 2 cut(s) 606, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 642
Bse118I RCCGGY 2 cut(s) 686, 1009
Bse1I ACTGG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 4 cut(s) 550, 572, 596, 829
BseJI GATNNNNATC 1 cut(s) 590
BseLI CCNNNNNNNGG 2 cut(s) 183, 642
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 2 cut(s) 686, 989
Bsh1236I CGCG 1 cut(s) 965
BshFI GGCC 1 cut(s) 714
BshNI GGYRCC 2 cut(s) 743, 1012
BshTI ACCGGT 1 cut(s) 1009
BsiHKAI GWGCWC 2 cut(s) 253, 312
BsiSI CCGG 2 cut(s) 687, 1010
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 183, 642
BsmAI GTCTC 2 cut(s) 153, 167
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 1 cut(s) 714
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 253, 312
Bsp143I GATC 4 cut(s) 355, 859, 900, 949
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 965
BspANI GGCC 1 cut(s) 714
BspFNI CGCG 1 cut(s) 965
BspLI GGNNCC 2 cut(s) 745, 1014
BspMAI CTGCAG 1 cut(s) 900
BspT107I GGYRCC 2 cut(s) 743, 1012
BspTNI GGTCTC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 686, 1009
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 2 cut(s) 686, 1009
BssECI CCNNGG 1 cut(s) 636
BssMI GATC 4 cut(s) 355, 859, 900, 949
BssNI GRCGYC 1 cut(s) 744
BssT1I CCWWGG 1 cut(s) 636
Bst4CI ACNGT 2 cut(s) 262, 396
Bst6I CTCTTC 1 cut(s) 783
BstACI GRCGYC 1 cut(s) 744
BstC8I GCNNGC 2 cut(s) 429, 712
BstDEI CTNAG 2 cut(s) 488, 660
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 4 cut(s) 550, 572, 596, 829
BstFNI CGCG 1 cut(s) 965
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 4 cut(s) 358, 862, 903, 952
BstMAI GTCTC 2 cut(s) 153, 167
BstMBI GATC 4 cut(s) 355, 859, 900, 949
BstMWI GCNNNNNNNGC 2 cut(s) 470, 895
BstSFI CTRYAG 1 cut(s) 896
BstUI CGCG 1 cut(s) 965
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 1 cut(s) 714
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 4 cut(s) 550, 572, 596, 829
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 2 cut(s) 429, 712
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 2 cut(s) 686, 1009
CspAI ACCGGT 1 cut(s) 1009
CviAII CATG 4 cut(s) 637, 706, 766, 831
DdeI CTNAG 2 cut(s) 488, 660
DinI GGCGCC 1 cut(s) 745
DpnI GATC 4 cut(s) 357, 861, 902, 951
DpnII GATC 4 cut(s) 355, 859, 900, 949
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 636
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 312
EgeI GGCGCC 1 cut(s) 745
EheI GGCGCC 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 4 cut(s) 640, 709, 769, 834
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 636, 705, 765, 830
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 355
FokI GGATG 4 cut(s) 557, 559, 583, 836
FriOI GRGCYC 1 cut(s) 312
FspBI CTAG 2 cut(s) 225, 305
GlaI GCGC 1 cut(s) 745
GsuI CTGGAG 1 cut(s) 853
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 1 cut(s) 714
HapII CCGG 2 cut(s) 687, 1010
HhaI GCGC 1 cut(s) 746
Hin1I GRCGYC 1 cut(s) 744
Hin1II CATG 4 cut(s) 640, 709, 769, 834
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 7 cut(s) 23, 165, 441, 693, 769, 910, 975
HpaII CCGG 2 cut(s) 687, 1010
HphI GGTGA 1 cut(s) 938
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 90, 585
Hpy188III TCNNGA 3 cut(s) 156, 172, 299
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 115, 370, 431, 514
HpyCH4III ACNGT 2 cut(s) 262, 396
HpyCH4IV ACGT 1 cut(s) 919
HpyCH4V TGCA 8 cut(s) 53, 76, 137, 240, 413, 830, 898, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 895
HpyF3I CTNAG 2 cut(s) 488, 660
HpySE526I ACGT 1 cut(s) 919
Hsp92I GRCGYC 1 cut(s) 744
Hsp92II CATG 4 cut(s) 640, 709, 769, 834
HspAI GCGC 1 cut(s) 744
KasI GGCGCC 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 355, 859, 900, 949
LpnPI CCDG 9 cut(s) 222, 380, 696, 700, 725, 883, 908, 909, 957
LweI GCATC 2 cut(s) 310, 817
MaeI CTAG 2 cut(s) 225, 305
MaeII ACGT 1 cut(s) 919
MaeIII GTNAC 3 cut(s) 494, 622, 781
MalI GATC 4 cut(s) 357, 861, 902, 951
MboI GATC 4 cut(s) 355, 859, 900, 949
MboII GAAGA 3 cut(s) 431, 800, 959
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 2 cut(s) 253, 312
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 2 cut(s) 359, 480
MluNI TGGCCA 1 cut(s) 714
Mly113I GGCGCC 1 cut(s) 744
MlyI GAGTC 2 cut(s) 687, 969
MmeI TCCRAC 3 cut(s) 39, 378, 586
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 714
MseI TTAA 4 cut(s) 71, 567, 669, 1021
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 2 cut(s) 687, 1010
Mva1269I GAATGC 1 cut(s) 764
MvnI CGCG 1 cut(s) 965
MwoI GCNNNNNNNGC 2 cut(s) 470, 895
NarI GGCGCC 1 cut(s) 744
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 415
NdeII GATC 4 cut(s) 355, 859, 900, 949
NlaIII CATG 4 cut(s) 640, 709, 769, 834
NlaIV GGNNCC 2 cut(s) 745, 1014
NmuCI GTSAC 1 cut(s) 781
NsiI ATGCAT 1 cut(s) 832
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 5 cut(s) 23, 165, 441, 769, 910
PflMI CCANNNNNTGG 1 cut(s) 642
PinAI ACCGGT 1 cut(s) 1009
PleI GAGTC 2 cut(s) 687, 969
PluTI GGCGCC 1 cut(s) 747
PpsI GAGTC 2 cut(s) 687, 969
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 745, 1014
PstI CTGCAG 1 cut(s) 900
PsuI RGATCY 1 cut(s) 949
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 71, 567, 669, 1021
Sau3AI GATC 4 cut(s) 355, 859, 900, 949
SchI GAGTC 2 cut(s) 687, 969
SduI GDGCHC 2 cut(s) 253, 312
SfaNI GCATC 2 cut(s) 310, 817
SfcI CTRYAG 1 cut(s) 896
SfoI GGCGCC 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
Sse9I AATT 2 cut(s) 359, 480
SsiI CCGC 1 cut(s) 965
SspDI GGCGCC 1 cut(s) 743
SspMI CTAG 2 cut(s) 225, 305
SstI GAGCTC 1 cut(s) 312
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 262, 396
TaiI ACGT 1 cut(s) 922
TaqI TCGA 4 cut(s) 171, 804, 858, 1005
TasI AATT 2 cut(s) 359, 480
TfiI GAWTC 5 cut(s) 23, 165, 441, 769, 910
Tru1I TTAA 4 cut(s) 71, 567, 669, 1021
Tru9I TTAA 4 cut(s) 71, 567, 669, 1021
TscAI CASTG 1 cut(s) 374
TseFI GTSAC 1 cut(s) 781
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 4 cut(s) 432, 561, 782, 960
TspRI CASTG 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 642
XapI RAATTY 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 225, 305
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.