Rw0G015810

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00739
OG0000053
Physical Location & Seq
Reverse (-)
2639 .. 6163
3525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015810.1

Sequence Viewer

Length: 1680 bp
ATGTCTCTTCAAGTTTTGGCATCTCAGGCTCAGGCTCAGAGGCCAGATAGTGTTGCTGATGTTAAGCGACCGTCGGCTAATTCTACCCCAAGCATTTGGGGTGATCATTTTCTCTCCTATGCTACCACGGAAGTTGACACTAAACTTGAGCAACATGTCCGAGAACTGAAAGAAGAGGTGAAGAGGATGCTAATGGACTCCTTAAAAAACCCTTCACAACAATTGGACTTGGTTGATGACATTCAACGCCTAGGTGTGTCCTATCATTTTGAAAATGAGATTGATGAAATTTTGAAACAAATTCACCACAACTACTCCTATGGTAGTGAAGATGACCTTTACACTACTGCTCTCTGTTTTCGATTGCTGAGACAACAAGGTTACAATGTTTCATGCGATATGTTCAACAAGTACATGGAAGGAAATGATAAAAAATTTAAGGCATCTCTCTTGAGTGATGTATCCGGGCTATTAAGCTTGTATGAAGCCGCACATCTTAGGATACATGGAGAAGACATACTTGAAGAGGCTCTAACCTTCACCATCACTCATCTTGAGTTGATCAAACATAGTTTAAGCCCTCCACTTTTGAAACAAGTAGCTCATTCCTTAACTCAGCCACTTCGAAAGGGCATCAATAGGGTGGAAGCTAAATATTACTTGTCAATCTATCATGAACGCGATTCACATAACGAGACTCTCCTGACTTTTGCAAAGTTGGATTTCAACCTATTGCAGCAAGTCCATCAAAAGGAACTATGTGAAATTACTAGGTGGTGGAAGGACTTGGACGTGAGAAACACGTTGCCGTTTACAAGAGATAGAGTTACAGAAGTATACTTCGGCTGGGCTTTGTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACATCATGCAAAGTCGCCGCCATGACATCTATTATGGATGACATTTATGATACCCATGGCACACTCGAAGAATTAGAGCATTTTACTGAAGCTATTCAGAGGTGGGACGTCTATGCTATAGATTTGTTACCAGATTATATGAAAGTCTGTTATAAGGCGCTGTTAGAAGTTTATACTGAAATTGAAGAAGAGCTTGCAAAGGAAGGAAAGTTGCATCAAATCCACTACGCCAGAGAAGCTATGAAAAAGCAAGCTGAAAATTACTTCCTTGAAGCTAAATGGTTGCACCAGAAACACATACCAACAATGGATGAATATATGTCCCTAGCAGTAATGACAGCAGGCTACCCTCTGCTAATAACAACATCTTTTGTTGTAATGGGAAATATTGCTACACAAGATTCCTTCGATTGGTTGGCCACTTATCCCAAGGCTGTAAAAGGGGCTGCAGTAGTTGCCCGACTCATGGATGACATAGCAGACCATAAGTTTGAGCAAAAGAGAGGACATGTTACCTCAGCTGTAGGGTGCTACATGAAAGAATATGGTGCCACAGAAGAAGAAGCAATAATCGGTTTGCGTAGAGAATTGAGTGACGCATGGAAGGACATAAATGAATCGTTCCACCTCCCTAATGTTGTTCCGAGGCCATTGCTAACTCGAATAATTAATTTTGCATGTATCATGGATGTTGTATACAAGTACGCAGATGGTTACAATACTCATGATAATACTGTGCTCAAGGATTTTATAGTTTCTACCCTTGTCCAACCCGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

559

Amino Acids

64.6

Weight (kDa)

5.5

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 204 3.3e-59 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 261 - 501 7.6e-94 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 302 - 501 2.5e-58 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1047
AatII GACGTC 1 cut(s) 1005
AccB1I GGYRCC 1 cut(s) 1442
AccI GTMKAC 2 cut(s) 837, 1590
AccII CGCG 1 cut(s) 681
AciI CCGC 2 cut(s) 489, 912
AcoI YGGCCR 1 cut(s) 1311
AcsI RAATTY 3 cut(s) 288, 300, 434
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 1002
AfaI GTAC 3 cut(s) 413, 863, 1598
AfiI CCNNNNNNNGG 4 cut(s) 751, 888, 1305, 1360
AflIII ACRYGT 3 cut(s) 154, 801, 1402
AjiI CACGTC 1 cut(s) 793
AluBI AGCT 9 cut(s) 477, 602, 650, 986, 1087, 1133, 1148, 1169, 1415
AluI AGCT 9 cut(s) 477, 602, 650, 986, 1087, 1133, 1148, 1169, 1415
Alw21I GWGCWC 1 cut(s) 1635
Alw26I GTCTC 3 cut(s) 9, 364, 689
AoxI GGCC 3 cut(s) 41, 1311, 1541
ApeKI GCWGC 2 cut(s) 736, 1340
ApoI RAATTY 3 cut(s) 288, 300, 434
ArsI GACNNNNNNTTYG 2 cut(s) 1367, 1399
AseI ATTAAT 1 cut(s) 1563
Asp700I GAANNNNTTC 1 cut(s) 987
AspA2I CCTAGG 1 cut(s) 250
AspLEI GCGC 1 cut(s) 1054
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 4 cut(s) 113, 190, 296, 532
AsuII TTCGAA 2 cut(s) 625, 867
AvrII CCTAGG 1 cut(s) 250
BalI TGGCCA 1 cut(s) 1313
BanI GGYRCC 1 cut(s) 1442
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 1635
BbvCI CCTCAGC 1 cut(s) 1411
BbvI GCAGC 2 cut(s) 748, 1327
BccI CCATC 3 cut(s) 551, 753, 1598
BceAI ACGGC 1 cut(s) 793
BcgI CGANNNNNNTGC 2 cut(s) 1528, 1562
BciVI GTATCC 2 cut(s) 472, 495
BclI TGATCA 2 cut(s) 103, 561
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 9, 364, 689
BfaI CTAG 4 cut(s) 251, 771, 888, 1220
BfmI CTRYAG 3 cut(s) 1011, 1341, 1416
BfoI RGCGCY 1 cut(s) 1055
BfuI GTATCC 2 cut(s) 472, 495
BisI GCNGC 4 cut(s) 489, 737, 912, 1341
BlnI CCTAGG 1 cut(s) 250
BlsI GCNGC 4 cut(s) 490, 738, 913, 1342
Bme1390I CCNGG 1 cut(s) 466
BmgBI CACGTC 1 cut(s) 793
BmiI GGNNCC 1 cut(s) 1444
BmrFI CCNGG 1 cut(s) 466
BmsI GCATC 5 cut(s) 29, 177, 452, 642, 1117
BpiI GAAGAC 1 cut(s) 519
Bpu10I CCTNAGC 2 cut(s) 30, 1411
Bpu14I TTCGAA 2 cut(s) 625, 867
BpuEI CTTGAG 4 cut(s) 167, 472, 575, 1619
BpuMI CCSGG 1 cut(s) 466
BsaHI GRCGYC 1 cut(s) 1002
BsaJI CCNNGG 5 cut(s) 126, 250, 949, 1323, 1538
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 751, 888, 1305, 1360
Bse3DI GCAATG 1 cut(s) 1544
BseDI CCNNGG 5 cut(s) 126, 250, 949, 1323, 1538
BseGI GGATG 5 cut(s) 192, 937, 1210, 1369, 1588
BseLI CCNNNNNNNGG 4 cut(s) 751, 888, 1305, 1360
BseMI GCAATG 1 cut(s) 1544
BseMII CTCAG 6 cut(s) 38, 44, 50, 359, 629, 1425
BseXI GCAGC 2 cut(s) 748, 1327
BseYI CCCAGC 1 cut(s) 846
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 43, 1313, 1543
BshNI GGYRCC 1 cut(s) 1442
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 1635
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 2 cut(s) 1013, 1201
BslI CCNNNNNNNGG 4 cut(s) 751, 888, 1305, 1360
BsmAI GTCTC 3 cut(s) 9, 364, 689
BsmFI GGGAC 2 cut(s) 1013, 1201
BsnI GGCC 3 cut(s) 43, 1313, 1543
Bsp119I TTCGAA 2 cut(s) 625, 867
Bsp1286I GDGCHC 1 cut(s) 1635
Bsp143I GATC 2 cut(s) 103, 561
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 2 cut(s) 489, 912
BspANI GGCC 3 cut(s) 43, 1313, 1543
BspCNI CTCAG 6 cut(s) 37, 43, 49, 360, 628, 1424
BspFNI CGCG 1 cut(s) 681
BspHI TCATGA 2 cut(s) 673, 1618
BspLI GGNNCC 1 cut(s) 1444
BspMAI CTGCAG 1 cut(s) 1345
BspQI GCTCTTC 1 cut(s) 1077
BspT104I TTCGAA 2 cut(s) 625, 867
BspT107I GGYRCC 1 cut(s) 1442
BsrDI GCAATG 1 cut(s) 1544
BssECI CCNNGG 5 cut(s) 126, 250, 949, 1323, 1538
BssMI GATC 2 cut(s) 103, 561
BssNAI GTATAC 2 cut(s) 838, 1591
BssNI GRCGYC 1 cut(s) 1002
BssT1I CCWWGG 3 cut(s) 250, 949, 1323
Bst1107I GTATAC 2 cut(s) 838, 1591
Bst4CI ACNGT 2 cut(s) 72, 1630
Bst6I CTCTTC 5 cut(s) 12, 168, 176, 519, 1077
BstACI GRCGYC 1 cut(s) 1002
BstAPI GCANNNNNTGC 1 cut(s) 1349
BstBI TTCGAA 2 cut(s) 625, 867
BstC8I GCNNGC 3 cut(s) 1089, 1146, 1237
BstDEI CTNAG 7 cut(s) 24, 30, 36, 368, 497, 615, 1411
BstDSI CCRYGG 2 cut(s) 126, 949
BstENI CCTNNNNNAGG 1 cut(s) 886
BstF5I GGATG 5 cut(s) 192, 937, 1210, 1369, 1588
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 1055
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 2 cut(s) 106, 564
BstMAI GTCTC 3 cut(s) 9, 364, 689
BstMBI GATC 2 cut(s) 103, 561
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 3 cut(s) 26, 1130, 1349
BstNSI RCATGY 3 cut(s) 158, 1406, 1575
BstSCI CCNGG 1 cut(s) 464
BstSFI CTRYAG 3 cut(s) 1011, 1341, 1416
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 748, 1327
BstV2I GAAGAC 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 2 cut(s) 838, 1591
BsuI GTATCC 2 cut(s) 472, 495
BsuRI GGCC 3 cut(s) 43, 1313, 1543
BtgI CCRYGG 2 cut(s) 126, 949
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 5 cut(s) 192, 937, 1210, 1369, 1588
BtsIMutI CAGTG 1 cut(s) 864
Cac8I GCNNGC 3 cut(s) 1089, 1146, 1237
CciI TCATGA 2 cut(s) 673, 1618
CfoI GCGC 1 cut(s) 1054
CseI GACGC 1 cut(s) 1499
Csp6I GTAC 3 cut(s) 412, 862, 1597
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviQI GTAC 3 cut(s) 412, 862, 1597
DdeI CTNAG 7 cut(s) 24, 30, 36, 368, 497, 615, 1411
DpnI GATC 2 cut(s) 105, 563
DpnII GATC 2 cut(s) 103, 561
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 5 cut(s) 12, 168, 176, 519, 1077
EarI CTCTTC 5 cut(s) 12, 168, 176, 519, 1077
Eco130I CCWWGG 3 cut(s) 250, 949, 1323
Eco57I CTGAAG 1 cut(s) 1002
EcoNI CCTNNNNNAGG 1 cut(s) 886
EcoT14I CCWWGG 3 cut(s) 250, 949, 1323
ErhI CCWWGG 3 cut(s) 250, 949, 1323
FalI AAGNNNNNCTT 6 cut(s) 321, 353, 504, 536, 1071, 1103
FaqI GGGAC 2 cut(s) 1013, 1201
FbaI TGATCA 2 cut(s) 103, 561
FblI GTMKAC 2 cut(s) 837, 1590
Fnu4HI GCNGC 4 cut(s) 489, 737, 912, 1341
FokI GGATG 5 cut(s) 199, 944, 1217, 1376, 1595
Fsp4HI GCNGC 4 cut(s) 489, 737, 912, 1341
FspBI CTAG 4 cut(s) 251, 771, 888, 1220
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 4 cut(s) 489, 737, 912, 1341
GsaI CCCAGC 1 cut(s) 850
HaeII RGCGCY 1 cut(s) 1055
HaeIII GGCC 3 cut(s) 43, 1313, 1543
HapII CCGG 1 cut(s) 465
HgaI GACGC 1 cut(s) 1499
HhaI GCGC 1 cut(s) 1054
Hin1I GRCGYC 1 cut(s) 1002
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 475
HinfI GANTC 6 cut(s) 197, 683, 697, 1295, 1356, 1511
HpaII CCGG 1 cut(s) 465
HphI GGTGA 4 cut(s) 113, 190, 296, 532
Hpy166II GTNNAC 5 cut(s) 136, 813, 838, 862, 1591
Hpy188I TCNGA 4 cut(s) 39, 161, 993, 1539
Hpy188III TCNNGA 5 cut(s) 451, 554, 674, 703, 1619
Hpy8I GTNNAC 5 cut(s) 136, 813, 838, 862, 1591
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 7 cut(s) 222, 413, 547, 775, 1091, 1309, 1492
HpyCH4III ACNGT 2 cut(s) 72, 1630
HpyCH4IV ACGT 3 cut(s) 792, 803, 1002
HpyCH4V TGCA 8 cut(s) 713, 736, 903, 1091, 1108, 1180, 1343, 1571
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 1130, 1349
HpyF3I CTNAG 7 cut(s) 24, 30, 36, 368, 497, 615, 1411
HpySE526I ACGT 3 cut(s) 792, 803, 1002
Hsp92I GRCGYC 1 cut(s) 1002
HspAI GCGC 1 cut(s) 1052
Ksp22I TGATCA 2 cut(s) 103, 561
Kzo9I GATC 2 cut(s) 103, 561
LguI GCTCTTC 1 cut(s) 1077
Lsp1109I GCAGC 2 cut(s) 748, 1327
LweI GCATC 5 cut(s) 29, 177, 452, 642, 1117
MaeI CTAG 4 cut(s) 251, 771, 888, 1220
MaeII ACGT 3 cut(s) 792, 803, 1002
MaeIII GTNAC 6 cut(s) 380, 826, 1020, 1405, 1487, 1607
MalI GATC 2 cut(s) 105, 563
MboI GATC 2 cut(s) 103, 561
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 1635
MlsI TGGCCA 1 cut(s) 1313
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 3 cut(s) 191, 691, 1350
MmeI TCCRAC 1 cut(s) 699
Mox20I TGGCCA 1 cut(s) 1313
MroXI GAANNNNTTC 1 cut(s) 987
MscI TGGCCA 1 cut(s) 1313
MseI TTAA 7 cut(s) 63, 203, 438, 473, 575, 611, 1563
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 1 cut(s) 1415
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 1 cut(s) 466
MunI CAATTG 1 cut(s) 221
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 3 cut(s) 26, 1130, 1349
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 949
NdeII GATC 2 cut(s) 103, 561
NlaIV GGNNCC 1 cut(s) 1444
NmuCI GTSAC 1 cut(s) 1487
NspI RCATGY 3 cut(s) 158, 1406, 1575
NspV TTCGAA 2 cut(s) 625, 867
PagI TCATGA 2 cut(s) 673, 1618
PciI ACATGT 2 cut(s) 154, 1402
PciSI GCTCTTC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 3 cut(s) 683, 1295, 1511
PkrI GCNGC 4 cut(s) 490, 738, 913, 1342
PleI GAGTC 3 cut(s) 191, 691, 1350
PpsI GAGTC 3 cut(s) 191, 691, 1350
PscI ACATGT 2 cut(s) 154, 1402
PshBI ATTAAT 1 cut(s) 1563
PsiI TTATAA 1 cut(s) 1047
PspFI CCCAGC 1 cut(s) 846
PspN4I GGNNCC 1 cut(s) 1444
PstI CTGCAG 1 cut(s) 1345
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 3 cut(s) 413, 863, 1598
RsaNI GTAC 3 cut(s) 412, 862, 1597
SapI GCTCTTC 1 cut(s) 1077
SaqAI TTAA 7 cut(s) 63, 203, 438, 473, 575, 611, 1563
SatI GCNGC 4 cut(s) 489, 737, 912, 1341
Sau3AI GATC 2 cut(s) 103, 561
SchI GAGTC 3 cut(s) 191, 691, 1350
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 1635
SfaNI GCATC 5 cut(s) 29, 177, 452, 642, 1117
SfcI CTRYAG 3 cut(s) 1011, 1341, 1416
SfuI TTCGAA 2 cut(s) 625, 867
SmlI CTYRAG 4 cut(s) 146, 451, 554, 1634
SmoI CTYRAG 4 cut(s) 146, 451, 554, 1634
SsiI CCGC 2 cut(s) 489, 912
SspI AATATT 3 cut(s) 656, 878, 1282
SspMI CTAG 4 cut(s) 251, 771, 888, 1220
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 3 cut(s) 250, 949, 1323
TaaI ACNGT 2 cut(s) 72, 1630
TaiI ACGT 3 cut(s) 795, 806, 1005
TaqI TCGA 6 cut(s) 361, 625, 867, 960, 1302, 1555
TatI WGTACW 2 cut(s) 411, 861
TauI GCSGC 2 cut(s) 491, 914
TfiI GAWTC 3 cut(s) 683, 1295, 1511
Tru1I TTAA 7 cut(s) 63, 203, 438, 473, 575, 611, 1563
Tru9I TTAA 7 cut(s) 63, 203, 438, 473, 575, 611, 1563
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 1 cut(s) 1487
TseI GCWGC 2 cut(s) 736, 1340
Tsp45I GTSAC 1 cut(s) 1487
TspDTI ATGAA 9 cut(s) 300, 381, 498, 690, 1049, 1151, 1221, 1445, 1524
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 1 cut(s) 864
VspI ATTAAT 1 cut(s) 1563
XagI CCTNNNNNAGG 1 cut(s) 886
XapI RAATTY 3 cut(s) 288, 300, 434
XceI RCATGY 3 cut(s) 158, 1406, 1575
XmaJI CCTAGG 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 837, 1590
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 4 cut(s) 251, 771, 888, 1220
ZraI GACGTC 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.