Rroxscaffold_4G00324000

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000053
Physical Location & Seq
Reverse (-)
55216256 .. 55219110
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324000.1

Sequence Viewer

Length: 1701 bp
ATGGATCAAGCTCGAACAGCAAATGCCAGTAGCACTCTTGATGTTGATCGACGTTCAGCTAATTTTTCTCCTAGCATTTGGGGCGATTATTTTCTGTCATATGCATCAATGGAAACTGTGGATATTGAATCCAACCACAGTATCCAAGAACTGAAGGAAGAAGTGAAGAGGACGCTAATGAGTTCTCTGTCTTTACAAAGATTACACTTGATTGATTACATTCAGCGCTTAGGGGTGTCCTACCATTTTGAGGATGAGATTTACCAACTTTTACAGCAAATTTACAACCGGTCCTGTTCTTCTTATGATGATGATGATGATGATGATGACGACGACGACGACCTTCACACAGTTGCTCTCCGATTTCGACTACTTAGGCAACAAGGTTTTAAGGTTTCATGCAACATGTTCAACAAGTTCATTGATGTTGATGGAAAATTTAAGGAATCATGTGTTGCTGATGTAGTAGGATTGCTAAGTTTGTACGAAGCAACACATCTAAGGACACATGGAGATGATATATTAGATCGAGCACGGTCCTTCACCACCACTCATCTTGAGTTTGCAGTGGCAGAACACGGCCATTTAAGCCCCCTGCTTTCAAAACAAGTAGCTCATGCCTTATATCAACCACTCTGGAAGGGAAACCCAAGGATTGAAGCGAGGCATTACCTCTCTAGCTACTGGGAACCAAATACTTCACATTTTAGCGGAAGTCTTTTGACTTTTGCGAAGTTGGATTTCAATCAATTGCAGCGAATCCATCAAAAAGAACTAAGTGACATCACAAGGTGGTGGAAGGAGTTGGACTTTGTCAACAAACTACCTTTTGCAAGGGACAGAATAGTAGAGTGTTACTTTTGGTCTTTGGGAGTCTACTTTGAGCCCAAGTATCATTTTGGGAGGACAACATTATGCAAAGCTCTTGGCTTAGTAACCATGATTGATGACACTTATGATACGCACGGCACACCTGAAGAACTAGAGCTCTTTACTGAAGCTGTTGAGAGGTGGGATATCTCTGCCATGGATTCATTGCCTGACTATATGAAAGTTTGCTATGAGGCATTGTTGAATGTCTACACTGAAATTAAAGATGAGCTTGCAAAGGAAGGAAACTCGTATCTCATCAACTATGCAATAGAAGCAGTGCAAATTCAAGTTAGATCTTACTTCGAGGAAGCCAAATGGTTCCACCAAAAGTACACACCGAAAACCTTTGATGAATATATGTTGGTGGCACTTGTATCGTCCGGCATGTTTATGATGGAAGCAACATTTATTGTTGCAATAGCAGGTGATATTGTTACAAGAGACTCCTTGGACTGGTTGTTCAGTGACCCTAAATTTGTAAAGGCTTCATCTTTAATTGCGAGACTCTTGAATGACATCCGAAGCCACAAGCTTGAGCAAAAGAGAGGACATGTTGTCTCAGCTGTGGAATGCTATATGAAAGAACACTGTGCTACAGAAGAAGAAGCGGTGATTGAACTAACTAAACAAGTAAATGATGCATGGAAGGATGTAAACGAAGGATTGCTTCACCCTATCGCTACTGTCCCTAGGTCACTACTATTGCAAATTGTCAATTTTCTACGCGTAACTGAGGTTATATACAAGCATGAAGATGGTTATACTCATGGGGGAGTTGTGCTTAAGGATTATATAACTTCTCTTCTTGTCGAACCTATTCCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

566

Amino Acids

65.51

Weight (kDa)

5.1

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 26 - 208 5.1e-57 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 267 - 508 1.5e-95 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 308 - 508 7.7e-54 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1286
Acc36I ACCTGC 1 cut(s) 1286
AccI GTMKAC 2 cut(s) 876, 1080
AccII CGCG 1 cut(s) 1599
AciI CCGC 2 cut(s) 711, 1481
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 4 cut(s) 279, 437, 1155, 1346
AcuI CTGAAG 3 cut(s) 173, 996, 1017
AdeI CACNNNGTG 1 cut(s) 792
AfaI GTAC 2 cut(s) 485, 1205
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 250, 1326
AflII CTTAAG 1 cut(s) 1655
AflIII ACRYGT 3 cut(s) 405, 1423, 1597
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 9 cut(s) 128, 412, 603, 659, 745, 1075, 1160, 1384, 1490
AhdI GACNNNNNGTC 1 cut(s) 1427
AloI GAACNNNNNNTCC 2 cut(s) 1316, 1348
Alw21I GWGCWC 2 cut(s) 535, 990
Alw26I GTCTC 3 cut(s) 1308, 1369, 1435
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 1 cut(s) 754
ApoI RAATTY 4 cut(s) 279, 437, 1155, 1346
ArsI GACNNNNNNTTYG 2 cut(s) 1331, 1363
AsiGI ACCGGT 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 1689
AspA2I CCTAGG 1 cut(s) 1562
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 291, 537
AsuHPI GGTGA 4 cut(s) 535, 1310, 1495, 1535
AvaII GGWCC 2 cut(s) 291, 537
AvrII CCTAGG 1 cut(s) 1562
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BanII GRGCYC 2 cut(s) 888, 990
Bbv12I GWGCWC 2 cut(s) 535, 990
BbvI GCAGC 1 cut(s) 766
BccI CCATC 4 cut(s) 425, 771, 1261, 1622
BceAI ACGGC 2 cut(s) 595, 982
BcgI CGANNNNNNTGC 2 cut(s) 1230, 1264
BciVI GTATCC 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 1308, 1369, 1435
BfaI CTAG 4 cut(s) 72, 678, 983, 1563
BfmI CTRYAG 1 cut(s) 1467
BfoI RGCGCY 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 1655
BfuAI ACCTGC 1 cut(s) 1286
BfuI GTATCC 1 cut(s) 152
BglII AGATCT 1 cut(s) 1166
BisI GCNGC 1 cut(s) 755
BlnI CCTAGG 1 cut(s) 1562
BlsI GCNGC 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 291, 537
BmeRI GACNNNNNGTC 1 cut(s) 1427
BmgT120I GGNCC 2 cut(s) 291, 537
BmiI GGNNCC 2 cut(s) 690, 1193
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 113, 1501
BmuI ACTGGG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 229
BpuEI CTTGAG 2 cut(s) 578, 1427
BsaBI GATNNNNATC 2 cut(s) 45, 744
BsaJI CCNNGG 4 cut(s) 650, 1026, 1320, 1562
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 1326
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 27, 689, 1331
Bse3DI GCAATG 1 cut(s) 1034
Bse8I GATNNNNATC 2 cut(s) 45, 744
BseDI CCNNGG 4 cut(s) 650, 1026, 1320, 1562
BseGI GGATG 3 cut(s) 259, 1389, 1528
BseJI GATNNNNATC 2 cut(s) 45, 744
BseLI CCNNNNNNNGG 2 cut(s) 250, 1326
BseMI GCAATG 1 cut(s) 1034
BseMII CTCAG 2 cut(s) 1446, 1596
BseNI ACTGG 3 cut(s) 27, 689, 1331
BseXI GCAGC 1 cut(s) 766
Bsh1236I CGCG 1 cut(s) 1599
BshFI GGCC 1 cut(s) 582
BshTI ACCGGT 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 535, 990
BsiSI CCGG 2 cut(s) 289, 1254
BslFI GGGAC 2 cut(s) 851, 1544
BslI CCNNNNNNNGG 2 cut(s) 250, 1326
BsmAI GTCTC 3 cut(s) 1308, 1369, 1435
BsmFI GGGAC 2 cut(s) 851, 1544
BsmI GAATGC 1 cut(s) 1448
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 3 cut(s) 535, 888, 990
Bsp143I GATC 4 cut(s) 4, 46, 526, 1166
Bsp19I CCATGG 1 cut(s) 1026
BspACI CCGC 2 cut(s) 711, 1481
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 2 cut(s) 1445, 1597
BspFNI CGCG 1 cut(s) 1599
BspLI GGNNCC 2 cut(s) 690, 1193
BspMI ACCTGC 1 cut(s) 1286
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 1655
BsrDI GCAATG 1 cut(s) 1034
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 3 cut(s) 27, 689, 1331
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 4 cut(s) 650, 1026, 1320, 1562
BssMI GATC 4 cut(s) 4, 46, 526, 1166
BssT1I CCWWGG 4 cut(s) 650, 1026, 1320, 1562
Bst4CI ACNGT 6 cut(s) 118, 140, 352, 537, 1463, 1558
Bst6I CTCTTC 2 cut(s) 161, 1680
BstAFI CTTAAG 1 cut(s) 1655
BstC8I GCNNGC 1 cut(s) 1104
BstDEI CTNAG 8 cut(s) 229, 374, 476, 500, 776, 931, 1432, 1605
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 3 cut(s) 259, 1389, 1528
BstFNI CGCG 1 cut(s) 1599
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 4 cut(s) 7, 49, 529, 1169
BstMAI GTCTC 3 cut(s) 1308, 1369, 1435
BstMBI GATC 4 cut(s) 4, 46, 526, 1166
BstMWI GCNNNNNNNGC 4 cut(s) 17, 81, 588, 1145
BstNSI RCATGY 3 cut(s) 409, 1261, 1427
BstSFI CTRYAG 1 cut(s) 1467
BstUI CGCG 1 cut(s) 1599
BstV1I GCAGC 1 cut(s) 766
BstX2I RGATCY 1 cut(s) 1166
BstYI RGATCY 1 cut(s) 1166
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 259, 1389, 1528
BtsI GCAGTG 2 cut(s) 573, 1155
BtsIMutI CAGTG 5 cut(s) 573, 1083, 1155, 1342, 1459
BveI ACCTGC 1 cut(s) 1286
Cac8I GCNNGC 1 cut(s) 1104
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 2 cut(s) 291, 537
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 484, 1204
CspAI ACCGGT 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviQI GTAC 2 cut(s) 484, 1204
DdeI CTNAG 8 cut(s) 229, 374, 476, 500, 776, 931, 1432, 1605
DpnI GATC 4 cut(s) 6, 48, 528, 1168
DpnII GATC 4 cut(s) 4, 46, 526, 1166
DraIII CACNNNGTG 1 cut(s) 792
DriI GACNNNNNGTC 1 cut(s) 1427
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 161, 1680
Eam1105I GACNNNNNGTC 1 cut(s) 1427
EarI CTCTTC 2 cut(s) 161, 1680
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 4 cut(s) 650, 1026, 1320, 1562
Eco24I GRGCYC 2 cut(s) 888, 990
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 2 cut(s) 291, 537
Eco47III AGCGCT 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 3 cut(s) 173, 996, 1017
EcoICRI GAGCTC 1 cut(s) 988
EcoRV GATATC 1 cut(s) 1018
EcoT14I CCWWGG 4 cut(s) 650, 1026, 1320, 1562
EcoT22I ATGCAT 2 cut(s) 106, 1516
EcoT38I GRGCYC 2 cut(s) 888, 990
ErhI CCWWGG 4 cut(s) 650, 1026, 1320, 1562
FalI AAGNNNNNCTT 4 cut(s) 1086, 1118, 1524, 1556
FaqI GGGAC 2 cut(s) 851, 1544
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 876, 1080
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 3 cut(s) 266, 1376, 1535
FriOI GRGCYC 2 cut(s) 888, 990
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 4 cut(s) 72, 678, 983, 1563
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 755
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 582
HapII CCGG 2 cut(s) 289, 1254
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 1403
HinfI GANTC 7 cut(s) 128, 446, 759, 873, 1031, 1316, 1377
HpaII CCGG 2 cut(s) 289, 1254
HphI GGTGA 4 cut(s) 535, 1310, 1495, 1535
Hpy166II GTNNAC 5 cut(s) 817, 877, 1081, 1206, 1528
Hpy188I TCNGA 2 cut(s) 362, 1394
Hpy188III TCNNGA 4 cut(s) 38, 557, 637, 1381
Hpy8I GTNNAC 5 cut(s) 817, 877, 1081, 1206, 1528
Hpy99I CGWCG 4 cut(s) 54, 335, 338, 341
HpyAV CCTTC 8 cut(s) 148, 353, 550, 634, 793, 1106, 1513, 1526
HpyCH4III ACNGT 6 cut(s) 118, 140, 352, 537, 1463, 1558
HpyCH4IV ACGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 81, 588, 1145
HpyF3I CTNAG 8 cut(s) 229, 374, 476, 500, 776, 931, 1432, 1605
HpySE526I ACGT 1 cut(s) 52
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 4 cut(s) 4, 46, 526, 1166
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 2 cut(s) 113, 1501
MaeI CTAG 4 cut(s) 72, 678, 983, 1563
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 7 cut(s) 779, 854, 934, 1306, 1337, 1566, 1600
MalI GATC 4 cut(s) 6, 48, 528, 1168
MboI GATC 4 cut(s) 4, 46, 526, 1166
MboII GAAGA 8 cut(s) 170, 178, 291, 989, 1484, 1487, 1637, 1667
MfeI CAATTG 1 cut(s) 749
MflI RGATCY 1 cut(s) 1166
MhlI GDGCHC 3 cut(s) 535, 888, 990
MluI ACGCGT 1 cut(s) 1597
MlyI GAGTC 3 cut(s) 882, 1310, 1371
MmeI TCCRAC 3 cut(s) 156, 717, 786
Mph1103I ATGCAT 2 cut(s) 106, 1516
MroXI GAANNNNTTC 1 cut(s) 1689
MseI TTAA 6 cut(s) 390, 441, 587, 1092, 1367, 1656
MslI CAYNNNNRTG 3 cut(s) 513, 1262, 1626
MspA1I CMGCKG 1 cut(s) 1436
MspCI CTTAAG 1 cut(s) 1655
MspI CCGG 2 cut(s) 289, 1254
MunI CAATTG 1 cut(s) 749
Mva1269I GAATGC 1 cut(s) 1448
MvnI CGCG 1 cut(s) 1599
MwoI GCNNNNNNNGC 4 cut(s) 17, 81, 588, 1145
NcoI CCATGG 1 cut(s) 1026
NdeI CATATG 1 cut(s) 100
NdeII GATC 4 cut(s) 4, 46, 526, 1166
NlaIV GGNNCC 2 cut(s) 690, 1193
NmuCI GTSAC 3 cut(s) 779, 1337, 1566
NsiI ATGCAT 2 cut(s) 106, 1516
NspI RCATGY 3 cut(s) 409, 1261, 1427
PaqCI CACCTGC 1 cut(s) 1286
PciI ACATGT 2 cut(s) 405, 1423
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 1448
PdmI GAANNNNTTC 1 cut(s) 1689
PfeI GAWTC 4 cut(s) 128, 446, 759, 1031
PflFI GACNNNGTC 1 cut(s) 812
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 3 cut(s) 881, 1310, 1371
PpsI GAGTC 3 cut(s) 881, 1310, 1371
PscI ACATGT 2 cut(s) 405, 1423
Psp124BI GAGCTC 1 cut(s) 990
PspN4I GGNNCC 2 cut(s) 690, 1193
PspPI GGNCC 2 cut(s) 291, 537
PsuI RGATCY 1 cut(s) 1166
PsyI GACNNNGTC 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 1436
RsaI GTAC 2 cut(s) 485, 1205
RsaNI GTAC 2 cut(s) 484, 1204
RseI CAYNNNNRTG 3 cut(s) 513, 1262, 1626
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 6 cut(s) 390, 441, 587, 1092, 1367, 1656
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 4 cut(s) 4, 46, 526, 1166
Sau96I GGNCC 2 cut(s) 291, 537
SchI GAGTC 3 cut(s) 882, 1310, 1371
SduI GDGCHC 3 cut(s) 535, 888, 990
SfaNI GCATC 2 cut(s) 113, 1501
SfcI CTRYAG 1 cut(s) 1467
SinI GGWCC 2 cut(s) 291, 537
SmiMI CAYNNNNRTG 3 cut(s) 513, 1262, 1626
SmlI CTYRAG 3 cut(s) 557, 1406, 1655
SmoI CTYRAG 3 cut(s) 557, 1406, 1655
SsiI CCGC 2 cut(s) 711, 1481
SspMI CTAG 4 cut(s) 72, 678, 983, 1563
SstI GAGCTC 1 cut(s) 990
StyI CCWWGG 4 cut(s) 650, 1026, 1320, 1562
TaaI ACNGT 6 cut(s) 118, 140, 352, 537, 1463, 1558
TaiI ACGT 1 cut(s) 55
TaqI TCGA 6 cut(s) 13, 49, 367, 529, 1176, 1683
TatI WGTACW 1 cut(s) 1203
TfiI GAWTC 4 cut(s) 128, 446, 759, 1031
Tru1I TTAA 6 cut(s) 390, 441, 587, 1092, 1367, 1656
Tru9I TTAA 6 cut(s) 390, 441, 587, 1092, 1367, 1656
TscAI CASTG 5 cut(s) 573, 1090, 1155, 1342, 1466
TseFI GTSAC 3 cut(s) 779, 1337, 1566
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 3 cut(s) 779, 1337, 1566
TspDTI ATGAA 8 cut(s) 387, 409, 1023, 1064, 1239, 1350, 1466, 1638
TspRI CASTG 5 cut(s) 573, 1090, 1155, 1342, 1466
Tth111I GACNNNGTC 1 cut(s) 812
Vha464I CTTAAG 1 cut(s) 1655
VpaK11BI GGWCC 2 cut(s) 291, 537
XapI RAATTY 4 cut(s) 279, 437, 1155, 1346
XceI RCATGY 3 cut(s) 409, 1261, 1427
XmaJI CCTAGG 1 cut(s) 1562
XmiI GTMKAC 2 cut(s) 876, 1080
XmnI GAANNNNTTC 1 cut(s) 1689
XspI CTAG 4 cut(s) 72, 678, 983, 1563
Zsp2I ATGCAT 2 cut(s) 106, 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.