FvH4_7g33640

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000053
Physical Location & Seq
Forward (+)
23889633 .. 23892505
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33640.t2

Sequence Viewer

Length: 1686 bp
ATGTCTCCCCTAGTTTTAGCATCTCAAGTTCACGAGCCAGAGACTGGTGTTGATGTTAAGCTACCTCTAGCTTATTATGAGTATGCCCCATGCATTTGGAACGATCATTTTCTCTCTTATTCTACCACGGAAGTTGACATTAAACTGGAGCAACACGTTCAAGAATTGAAAGAAGAGGTGAAGAGAATTCTAAAGGATCCCGCTAATGTATCTGGTTTGCAACAAATAGACTTGGTTAATGACCTTCAACGTTTAGGCATGGCCTATCATTTTGAAAATGAGATTGATGAGATTTTGAAACAAATTCACCACAACTACTCTTGTGGTACTGATGATGATGACCTTTACACTACTGCTCTGCGTTTTCGATTGCTTAGACAACATGGTTATAACATTTCATGTGATATATTCAACAAGTTCAAGGATGGAAATCATCAGACATTTAAGGCATCTCTTCAGAGTGATGTATCAGGACTATTAAGCTTGTACGAAGCCACCCATCTTAGGGTACACGGAGAAGAGATACTCGAAGAGGCACTAGCCTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTCCACTTTCGAATCTAGTATCCCATTCCTTGAATCAGCCACTTCGAACAGGCGTGGCGAGGGTGGAAGCAAGACATTACTTGTCGATCTACCAGGACTGCGATTCACATAACGAGACTCTCCGAACTCTTGCAAAGTTGGACTTCAACTTAGTGCAACAACTCCATCAGAAGGAGCTATGTGAAATAACAAGGTGGTGGAAGAACTTGGACGTGAAAAACAAGCTACCATTTGTAAGAGACAGAATTACCGAAGTTTACTTCATCTGGGTTTTGTCAGTGTACTTCGAACCACAATTTTCCTTTGCTAGGAGGACATCCTGCAAAGTCACTGCAATATTATCTATTATCGATGACATTTATGATACCCAGGGCACACTCGAAGAACTAGAGCTCTTCACTGAAGCTATTCAGAGGTGGGATATCTGTGCCATAGATCCATTGCCAGATTATATGAAAGTTTTTTATAAGGCAATGTTAGAAGTCTACATCGAAATTGAAGAAGAGCTCGCAAAGGAGGGAAACTTGTATCGAATCCACTACGCCATAGAAGCTATGAAAAGGCAAGCAACATATTACTTCCATGAAGCAAAATTGTTGCAACAGAAACACATACCAACGTTGGATGAATACATGGACCTAGCACTACCGAGCACGGCCTACCATATGCTAATAACAACAGCCTTTGTTGGAATGGGAGATATTGCAACGCAAGACTCCTTCGATTGGTTGGCCACTTATCCCAGGGCTGTAAAAGGAGCTGAAGTAGTTTGCCGACTTATGGATGACATAGCGGACTACAAGTTTGAGCTAGAGAGAGGAACTGATATCTCATCTGTGGAGTGCTACTTGAAAGAACATGGTGCCACAGAAGAAGAAGCAATGACTGAATTGCGTAGAAGACTGAGTGACGCATGGAAGGACATAAACGAATCGTTCTTCCTTCCTAATGCTCTTCCGAGGCCGCTACTAACTCGAGTTCTTAACTTTGCTTGTGCCATGGATGTTGCATACAAGTATGAAGATAGTTACACTACTCATCATTCGAGTATACTCAAGGATTTTATAATTCCTACTCTTGTAGAATCCGTTCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

562

Amino Acids

65.07

Weight (kDa)

5.08

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 206 5.8e-60 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 263 - 350 3.4e-33 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 304 - 353 1.3e-10 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 349 - 471 3.2e-39 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 349 - 471 7.7e-33 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 390, 1053, 1652, 1684
AccB1I GGYRCC 1 cut(s) 1448
AccB7I CCANNNNNTGG 1 cut(s) 44
AccI GTMKAC 2 cut(s) 1071, 1636
AciI CCGC 3 cut(s) 201, 1379, 1550
AclI AACGTT 2 cut(s) 250, 1205
AclWI GGATC 3 cut(s) 191, 204, 1016
AcoI YGGCCR 1 cut(s) 1317
AcsI RAATTY 2 cut(s) 186, 303
AcuI CTGAAG 3 cut(s) 440, 1008, 1368
AfaI GTAC 4 cut(s) 328, 488, 510, 869
AfiI CCNNNNNNNGG 7 cut(s) 44, 504, 505, 757, 894, 1311, 1366
AflIII ACRYGT 1 cut(s) 154
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 3 cut(s) 678, 954, 1328
Alw21I GWGCWC 3 cut(s) 981, 1095, 1241
Alw26I GTCTC 4 cut(s) 9, 35, 695, 819
AlwI GGATC 3 cut(s) 191, 204, 1016
AlwNI CAGNNNCTG 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 1560
AoxI GGCC 4 cut(s) 261, 1242, 1317, 1547
ApoI RAATTY 2 cut(s) 186, 303
ArsI GACNNNNNNTTYG 2 cut(s) 1373, 1405
Asp700I GAANNNNTTC 2 cut(s) 993, 1674
AspS9I GGNCC 1 cut(s) 1222
AsuHPI GGTGA 3 cut(s) 190, 299, 538
AsuII TTCGAA 3 cut(s) 596, 631, 873
AvaI CYCGRG 1 cut(s) 1560
AvaII GGWCC 1 cut(s) 1222
BaeGI GKGCMC 1 cut(s) 962
BalI TGGCCA 1 cut(s) 1319
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 1448
BanII GRGCYC 2 cut(s) 981, 1095
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 1492
Bbv12I GWGCWC 3 cut(s) 981, 1095, 1241
BccI CCATC 3 cut(s) 419, 507, 759
BceAI ACGGC 1 cut(s) 1257
BciT130I CCWGG 3 cut(s) 680, 956, 1330
BciVI GTATCC 1 cut(s) 616
BcoDI GTCTC 4 cut(s) 9, 35, 695, 819
BfaI CTAG 8 cut(s) 11, 68, 539, 602, 894, 974, 1226, 1397
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 1 cut(s) 1550
BlsI GCNGC 1 cut(s) 1551
Bme1390I CCNGG 3 cut(s) 680, 956, 1330
Bme18I GGWCC 1 cut(s) 1222
BmeT110I CYCGRG 1 cut(s) 1560
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 1 cut(s) 1222
BmiI GGNNCC 2 cut(s) 198, 1450
BmrFI CCNGG 3 cut(s) 680, 956, 1330
BmsI GCATC 2 cut(s) 29, 458
BpiI GAAGAC 1 cut(s) 1492
BpmI CTGGAG 1 cut(s) 167
Bpu14I TTCGAA 3 cut(s) 596, 631, 873
BpuEI CTTGAG 3 cut(s) 9, 581, 1625
Bsa29I ATCGAT 1 cut(s) 936
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 7 cut(s) 126, 954, 955, 1328, 1329, 1544, 1584
BsaXI ACNNNNNCTCC 2 cut(s) 1335, 1365
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 504, 505, 757, 894, 1311, 1366
Bse1I ACTGG 2 cut(s) 49, 150
Bse3DI GCAATG 3 cut(s) 1025, 1065, 1473
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 3 cut(s) 680, 956, 1330
BseCI ATCGAT 1 cut(s) 936
BseDI CCNNGG 7 cut(s) 126, 954, 955, 1328, 1329, 1544, 1584
BseGI GGATG 5 cut(s) 430, 902, 1216, 1375, 1594
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 7 cut(s) 44, 504, 505, 757, 894, 1311, 1366
BseMI GCAATG 3 cut(s) 1025, 1065, 1473
BseMII CTCAG 1 cut(s) 1481
BseNI ACTGG 2 cut(s) 49, 150
BseSI GKGCMC 1 cut(s) 962
BshFI GGCC 4 cut(s) 263, 1244, 1319, 1549
BshNI GGYRCC 1 cut(s) 1448
BshVI ATCGAT 1 cut(s) 936
BsiHKAI GWGCWC 3 cut(s) 981, 1095, 1241
BsiHKCI CYCGRG 1 cut(s) 1560
BslI CCNNNNNNNGG 7 cut(s) 44, 504, 505, 757, 894, 1311, 1366
BsmAI GTCTC 4 cut(s) 9, 35, 695, 819
BsnI GGCC 4 cut(s) 263, 1244, 1319, 1549
BsoBI CYCGRG 1 cut(s) 1560
Bsp119I TTCGAA 3 cut(s) 596, 631, 873
Bsp1286I GDGCHC 4 cut(s) 962, 981, 1095, 1241
Bsp143I GATC 5 cut(s) 103, 196, 567, 672, 1021
Bsp19I CCATGG 1 cut(s) 1584
BspACI CCGC 3 cut(s) 201, 1379, 1550
BspANI GGCC 4 cut(s) 263, 1244, 1319, 1549
BspCNI CTCAG 1 cut(s) 1482
BspDI ATCGAT 1 cut(s) 936
BspLI GGNNCC 2 cut(s) 198, 1450
BspPI GGATC 3 cut(s) 191, 204, 1016
BspQI GCTCTTC 3 cut(s) 986, 1083, 1545
BspT104I TTCGAA 3 cut(s) 596, 631, 873
BspT107I GGYRCC 1 cut(s) 1448
BsrDI GCAATG 3 cut(s) 1025, 1065, 1473
BsrI ACTGG 2 cut(s) 49, 150
BssECI CCNNGG 7 cut(s) 126, 954, 955, 1328, 1329, 1544, 1584
BssMI GATC 5 cut(s) 103, 196, 567, 672, 1021
BssNAI GTATAC 1 cut(s) 1637
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 1584
Bst1107I GTATAC 1 cut(s) 1637
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 680, 956, 1330
Bst4CI ACNGT 1 cut(s) 578
Bst6I CTCTTC 8 cut(s) 168, 176, 459, 513, 525, 986, 1083, 1545
BstBI TTCGAA 3 cut(s) 596, 631, 873
BstC8I GCNNGC 2 cut(s) 1095, 1152
BstDEI CTNAG 4 cut(s) 374, 503, 736, 1490
BstDSI CCRYGG 2 cut(s) 126, 1584
BstENI CCTNNNNNAGG 1 cut(s) 892
BstF5I GGATG 5 cut(s) 430, 902, 1216, 1375, 1594
BstKTI GATC 5 cut(s) 106, 199, 570, 675, 1024
BstMAI GTCTC 4 cut(s) 9, 35, 695, 819
BstMBI GATC 5 cut(s) 103, 196, 567, 672, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 1136
BstNI CCWGG 3 cut(s) 680, 956, 1330
BstSCI CCNGG 3 cut(s) 678, 954, 1328
BstSLI GKGCMC 1 cut(s) 962
BstV2I GAAGAC 1 cut(s) 1492
BstX2I RGATCY 2 cut(s) 196, 1021
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 2 cut(s) 196, 1021
BstZ17I GTATAC 1 cut(s) 1637
Bsu15I ATCGAT 1 cut(s) 936
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 4 cut(s) 263, 1244, 1319, 1549
BsuTUI ATCGAT 1 cut(s) 936
BtgI CCRYGG 2 cut(s) 126, 1584
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 5 cut(s) 430, 902, 1216, 1375, 1594
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 870, 915, 984
Cac8I GCNNGC 2 cut(s) 1095, 1152
CaiI CAGNNNCTG 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 1222
ClaI ATCGAT 1 cut(s) 936
CseI GACGC 1 cut(s) 1505
Csp6I GTAC 4 cut(s) 327, 487, 509, 868
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 541, 576
CviAII CATG 9 cut(s) 90, 259, 383, 399, 1169, 1219, 1445, 1500, 1585
CviQI GTAC 4 cut(s) 327, 487, 509, 868
DdeI CTNAG 4 cut(s) 374, 503, 736, 1490
DpnI GATC 5 cut(s) 105, 198, 569, 674, 1023
DpnII GATC 5 cut(s) 103, 196, 567, 672, 1021
EaeI YGGCCR 1 cut(s) 1317
Eam1104I CTCTTC 8 cut(s) 168, 176, 459, 513, 525, 986, 1083, 1545
EarI CTCTTC 8 cut(s) 168, 176, 459, 513, 525, 986, 1083, 1545
Ecl136II GAGCTC 2 cut(s) 979, 1093
Eco130I CCWWGG 1 cut(s) 1584
Eco24I GRGCYC 2 cut(s) 981, 1095
Eco32I GATATC 2 cut(s) 1009, 1414
Eco47I GGWCC 1 cut(s) 1222
Eco53kI GAGCTC 2 cut(s) 979, 1093
Eco57I CTGAAG 3 cut(s) 440, 1008, 1368
Eco88I CYCGRG 1 cut(s) 1560
EcoICRI GAGCTC 2 cut(s) 979, 1093
EcoNI CCTNNNNNAGG 1 cut(s) 892
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 678, 954, 1328
EcoRV GATATC 2 cut(s) 1009, 1414
EcoT14I CCWWGG 1 cut(s) 1584
EcoT22I ATGCAT 1 cut(s) 95
EcoT38I GRGCYC 2 cut(s) 981, 1095
ErhI CCWWGG 1 cut(s) 1584
FaeI CATG 9 cut(s) 93, 262, 386, 402, 1172, 1222, 1448, 1503, 1588
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FatI CATG 9 cut(s) 89, 258, 382, 398, 1168, 1218, 1444, 1499, 1584
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 1251
FblI GTMKAC 2 cut(s) 1071, 1636
Fnu4HI GCNGC 1 cut(s) 1550
FokI GGATG 5 cut(s) 437, 889, 1223, 1382, 1601
FriOI GRGCYC 2 cut(s) 981, 1095
Fsp4HI GCNGC 1 cut(s) 1550
FspBI CTAG 8 cut(s) 11, 68, 539, 602, 894, 974, 1226, 1397
GluI GCNGC 1 cut(s) 1550
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 4 cut(s) 263, 1244, 1319, 1549
HgaI GACGC 1 cut(s) 1505
Hin1II CATG 9 cut(s) 93, 262, 386, 402, 1172, 1222, 1448, 1503, 1588
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 9 cut(s) 563, 598, 619, 689, 703, 1119, 1301, 1517, 1670
HphI GGTGA 3 cut(s) 190, 299, 538
Hpy166II GTNNAC 7 cut(s) 31, 136, 511, 844, 868, 1072, 1637
Hpy188I TCNGA 6 cut(s) 438, 459, 710, 756, 999, 1545
Hpy188III TCNNGA 4 cut(s) 32, 161, 471, 560
Hpy8I GTNNAC 7 cut(s) 31, 136, 511, 844, 868, 1072, 1637
HpyAV CCTTC 6 cut(s) 254, 553, 751, 1315, 1498, 1538
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 4 cut(s) 156, 250, 798, 1205
HpyCH4V TGCA 9 cut(s) 93, 220, 719, 742, 909, 920, 1186, 1292, 1595
HpyF10VI GCNNNNNNNGC 1 cut(s) 1136
HpyF3I CTNAG 4 cut(s) 374, 503, 736, 1490
HpySE526I ACGT 4 cut(s) 156, 250, 798, 1205
Hsp92II CATG 9 cut(s) 93, 262, 386, 402, 1172, 1222, 1448, 1503, 1588
Kzo9I GATC 5 cut(s) 103, 196, 567, 672, 1021
LguI GCTCTTC 3 cut(s) 986, 1083, 1545
LmnI GCTCC 3 cut(s) 148, 760, 1343
LweI GCATC 2 cut(s) 29, 458
MaeI CTAG 8 cut(s) 11, 68, 539, 602, 894, 974, 1226, 1397
MaeII ACGT 4 cut(s) 156, 250, 798, 1205
MaeIII GTNAC 3 cut(s) 913, 1493, 1613
MalI GATC 5 cut(s) 105, 198, 569, 674, 1023
MboI GATC 5 cut(s) 103, 196, 567, 672, 1021
MflI RGATCY 2 cut(s) 196, 1021
MhlI GDGCHC 4 cut(s) 962, 981, 1095, 1241
MlsI TGGCCA 1 cut(s) 1319
MluCI AATT 9 cut(s) 164, 186, 303, 831, 881, 1080, 1178, 1475, 1653
MluNI TGGCCA 1 cut(s) 1319
MlyI GAGTC 3 cut(s) 572, 697, 1295
MmeI TCCRAC 3 cut(s) 705, 1188, 1255
Mox20I TGGCCA 1 cut(s) 1319
Mph1103I ATGCAT 1 cut(s) 95
MroXI GAANNNNTTC 2 cut(s) 993, 1674
MscI TGGCCA 1 cut(s) 1319
MseI TTAA 7 cut(s) 57, 141, 237, 444, 479, 581, 1569
Msp20I TGGCCA 1 cut(s) 1319
MspR9I CCNGG 3 cut(s) 680, 956, 1330
MvaI CCWGG 3 cut(s) 680, 956, 1330
MwoI GCNNNNNNNGC 1 cut(s) 1136
NcoI CCATGG 1 cut(s) 1584
NdeI CATATG 1 cut(s) 1251
NdeII GATC 5 cut(s) 103, 196, 567, 672, 1021
NlaIII CATG 9 cut(s) 93, 262, 386, 402, 1172, 1222, 1448, 1503, 1588
NlaIV GGNNCC 2 cut(s) 198, 1450
NmuCI GTSAC 2 cut(s) 913, 1493
NsiI ATGCAT 1 cut(s) 95
NspV TTCGAA 3 cut(s) 596, 631, 873
PaeR7I CTCGAG 1 cut(s) 1560
PasI CCCWGGG 2 cut(s) 955, 1329
PciSI GCTCTTC 3 cut(s) 986, 1083, 1545
PdmI GAANNNNTTC 2 cut(s) 993, 1674
PfeI GAWTC 6 cut(s) 598, 619, 689, 1119, 1517, 1670
PflMI CCANNNNNTGG 1 cut(s) 44
PkrI GCNGC 1 cut(s) 1551
PleI GAGTC 3 cut(s) 571, 697, 1295
PpsI GAGTC 3 cut(s) 571, 697, 1295
PsiI TTATAA 4 cut(s) 390, 1053, 1652, 1684
Psp124BI GAGCTC 2 cut(s) 981, 1095
Psp1406I AACGTT 2 cut(s) 250, 1205
Psp6I CCWGG 3 cut(s) 678, 954, 1328
PspGI CCWGG 3 cut(s) 678, 954, 1328
PspN4I GGNNCC 2 cut(s) 198, 1450
PspPI GGNCC 1 cut(s) 1222
PspXI VCTCGAGB 1 cut(s) 1560
PsrI GAACNNNNNNTAC 1 cut(s) 1659
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 196, 1021
RsaI GTAC 4 cut(s) 328, 488, 510, 869
RsaNI GTAC 4 cut(s) 327, 487, 509, 868
SacI GAGCTC 2 cut(s) 981, 1095
SapI GCTCTTC 3 cut(s) 986, 1083, 1545
SaqAI TTAA 7 cut(s) 57, 141, 237, 444, 479, 581, 1569
SatI GCNGC 1 cut(s) 1550
Sau3AI GATC 5 cut(s) 103, 196, 567, 672, 1021
Sau96I GGNCC 1 cut(s) 1222
SchI GAGTC 3 cut(s) 572, 697, 1295
ScrFI CCNGG 3 cut(s) 680, 956, 1330
SduI GDGCHC 4 cut(s) 962, 981, 1095, 1241
SfaNI GCATC 2 cut(s) 29, 458
Sfr274I CTCGAG 1 cut(s) 1560
SfuI TTCGAA 3 cut(s) 596, 631, 873
SinI GGWCC 1 cut(s) 1222
SlaI CTCGAG 1 cut(s) 1560
SmlI CTYRAG 4 cut(s) 24, 560, 1560, 1640
SmoI CTYRAG 4 cut(s) 24, 560, 1560, 1640
Sse9I AATT 9 cut(s) 164, 186, 303, 831, 881, 1080, 1178, 1475, 1653
SsiI CCGC 3 cut(s) 201, 1379, 1550
SspI AATATT 1 cut(s) 924
SspMI CTAG 8 cut(s) 11, 68, 539, 602, 894, 974, 1226, 1397
SstI GAGCTC 2 cut(s) 981, 1095
StyD4I CCNGG 3 cut(s) 678, 954, 1328
StyI CCWWGG 1 cut(s) 1584
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 4 cut(s) 159, 253, 801, 1208
TasI AATT 9 cut(s) 164, 186, 303, 831, 881, 1080, 1178, 1475, 1653
TatI WGTACW 1 cut(s) 867
TauI GCSGC 1 cut(s) 1552
TfiI GAWTC 6 cut(s) 598, 619, 689, 1119, 1517, 1670
Tru1I TTAA 7 cut(s) 57, 141, 237, 444, 479, 581, 1569
Tru9I TTAA 7 cut(s) 57, 141, 237, 444, 479, 581, 1569
TscAI CASTG 3 cut(s) 870, 922, 991
TseFI GTSAC 2 cut(s) 913, 1493
Tsp45I GTSAC 2 cut(s) 913, 1493
TspDTI ATGAA 7 cut(s) 387, 838, 1055, 1157, 1185, 1227, 1620
TspGWI ACGGA 3 cut(s) 143, 528, 1663
TspRI CASTG 3 cut(s) 870, 922, 991
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 1222
XagI CCTNNNNNAGG 1 cut(s) 892
XapI RAATTY 2 cut(s) 186, 303
XhoI CTCGAG 1 cut(s) 1560
XmiI GTMKAC 2 cut(s) 1071, 1636
XmnI GAANNNNTTC 2 cut(s) 993, 1674
XspI CTAG 8 cut(s) 11, 68, 539, 602, 894, 974, 1226, 1397
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.