Rroxscaffold_6G00407540

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000053
Physical Location & Seq
Reverse (-)
30172920 .. 30176125
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407540.1

Sequence Viewer

Length: 1683 bp
ATGTCTATCCGAACTTTTCTATCACTTCAAACGCCACAAATTCCTCAGCCTGATATTGTTCGGCGGATAGCGAATTTTCAACCAAGCATTTGGGGAGATCGGTTCATTAACTATGCCTCCCAGGACAACAATATAACTGATGGCCTTTGGAAACAGCAGGTTGACCAACTGAAAGTAGTAGTCAGGAGGGATGTTTTCAGAAATGCGGCAGGTAATTTTTCAACACAGATGAAGTCAATTGATGCAATGCAGCGTCTTGGTATCGCATACCATTTCGAAACAGAAATAGAACAAGCACTCGAACATATGCATGCTACACTTGTTCATGATGGTGATTTGTACGATGTTGCTCTTGGTTTTCGGCTACTAAGACAACATGGATATAATGTTTCATCCGATGTTTTTGACAAGTTCAAAGATGCAAATGGTAACTTCAAAGAAGGCTTAACTGCCAATACGGCTGGTATGTTAAGCTTTTATGAAGCAACACATCTAAGGATGCATGGTGAAGATACACTAGAAGATGCTGTGTTTTTCACCACAACTCACCTTGAGTCATCTGCAACTCATTTAAGTCATCCACTTGCAGCGGAAATAACGCAAGCCTTAGAGAGACCTCTACGAAAAAGTCCAGAAAGATTATGTGCAAGGCGTTACATGTCAATCTTACAAGATAATCCTAAATCTTTGCATCATGAAGTAGTAGCTTTGTTGAAACTTGCAAAGTTAGATTTCAATCTTGTTCAGTCTTTACACAAAAGGGAGCTCAATGAGATCTCTAGGTGGTGGAAAGAACTAGACTTTGAAAGGGAGCTTCCTTTCGCAAGAAATAGGATTGTGGAGTTGTACTTTTGGACAGTGGGAGTATTTTTTGAACCCCAATACGCCTCAGGGAGAAAATTTCTAACAAAAGTAATTGCCTTGGGGTCAGTTTTGGATGATATTTACGATGCATATGGTACATTTGAAGAACTCGAGATCTTTACTGAAGCAATTCAAAGGTGGGACATCAATTGTATAGATGAATTGCCAGACTATATGAAGATATTTTATCGCAGGCTGCTGAATGTTTGCAGTGAAATTGAGGGGGAGATGGAAAAGCAAGGAACTTCATACCGAGTACATTATGCAAAAGAAGCTTTAAAAGCTCAAGCCCGATTATACTTTGCCGAGGCACGATGGCTCCATGAAGACTACATCCCAAGCATGGATGAGTACATGGGTATCGCGATACCTTCTGTTGGAAACACTTTGCTTTCGACTATATCTTTAGTCGGAATGGGAGACATAGTGACCAAGGAGGCATTTAAGTGGTTAGCAAATGACCCTAAAATTCTTAGAGCTTCCAACATCATTTTCAGGCTCATGGATGACATTGTTTCTAGCAAGTTTGAGAAAGAGAGAGAGCATGTTGCTTCTAGTATTGATTGCTACATGAAGCAACATGGGGTCTCAGAACAAGAGACCATTGAAGTCTTCAACAAAAAAATTGTGGATTCATGGAAGGATATAAATGAAGAGTTTCTTAAACCGACCGCTGTGCCGATGCCTGTGCTTACTCGTGTTCTTAACCTAACGAGAGTGGTTGATCTCCTTTACAAAGGGGAGGATGAGTACACTGGAGTGGGAAACGTTATGAAAGATGGTGTTGTCTCACTCTTTATCGATCCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

560

Amino Acids

64.59

Weight (kDa)

5.48

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 203 1.4e-53 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 264 - 503 9.7e-100 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 304 - 503 1.6e-58 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 148, 200
AccII CGCG 1 cut(s) 1229
AciI CCGC 4 cut(s) 64, 206, 590, 1536
AclI AACGTT 1 cut(s) 1632
AclWI GGATC 1 cut(s) 1661
AcsI RAATTY 4 cut(s) 39, 73, 899, 1332
AcuI CTGAAG 1 cut(s) 1008
AfaI GTAC 6 cut(s) 341, 848, 961, 1122, 1217, 1616
AfiI CCNNNNNNNGG 2 cut(s) 1207, 1241
AflIII ACRYGT 1 cut(s) 657
AjnI CCWGG 1 cut(s) 120
AjuI GAANNNNNNNTTGG 2 cut(s) 1340, 1372
AleI CACNNNNGTG 1 cut(s) 1622
AluBI AGCT 7 cut(s) 474, 707, 766, 814, 1139, 1148, 1343
AluI AGCT 7 cut(s) 474, 707, 766, 814, 1139, 1148, 1343
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 5 cut(s) 607, 1278, 1456, 1457, 1657
AlwI GGATC 1 cut(s) 1661
Ama87I CYCGRG 1 cut(s) 974
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 250, 587, 1060
ApoI RAATTY 4 cut(s) 39, 73, 899, 1332
Asp700I GAANNNNTTC 2 cut(s) 993, 1521
AsuHPI GGTGA 4 cut(s) 344, 518, 529, 539
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 974
AxyI CCTNAGG 1 cut(s) 889
BaeI ACNNNNGTAYC 2 cut(s) 1207, 1240
BanII GRGCYC 1 cut(s) 768
BauI CACGAG 1 cut(s) 1560
BbsI GAAGAC 2 cut(s) 1197, 1468
Bbv12I GWGCWC 1 cut(s) 768
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 262, 599, 1047
BccI CCATC 5 cut(s) 134, 323, 1087, 1173, 1637
BceAI ACGGC 1 cut(s) 474
BcgI CGANNNNNNTGC 4 cut(s) 1522, 1534, 1556, 1568
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 5 cut(s) 607, 1278, 1456, 1457, 1657
BfaI CTAG 5 cut(s) 518, 780, 797, 1383, 1419
BfuAI ACCTGC 2 cut(s) 148, 200
BglI GCCNNNNNGGC 1 cut(s) 458
BglII AGATCT 2 cut(s) 774, 978
BisI GCNGC 4 cut(s) 207, 251, 588, 1061
BlsI GCNGC 4 cut(s) 208, 252, 589, 1062
Bme1390I CCNGG 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 974
BmiI GGNNCC 1 cut(s) 1184
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 7 cut(s) 232, 409, 489, 514, 700, 940, 1536
BpiI GAAGAC 2 cut(s) 1197, 1468
BpmI CTGGAG 1 cut(s) 1641
Bpu10I CCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 572, 1134
Bsa29I ATCGAT 1 cut(s) 1665
BsaBI GATNNNNATC 1 cut(s) 735
BsaI GGTCTC 3 cut(s) 607, 1456, 1457
BsaJI CCNNGG 4 cut(s) 120, 921, 1170, 1296
BsaXI ACNNNNNCTCC 8 cut(s) 101, 131, 1167, 1197, 1275, 1305, 1598, 1628
Bsc4I CCNNNNNNNGG 2 cut(s) 1207, 1241
Bse1I ACTGG 2 cut(s) 1624, 1670
Bse21I CCTNAGG 1 cut(s) 889
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 735
BseBI CCWGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 1665
BseDI CCNNGG 4 cut(s) 120, 921, 1170, 1296
BseGI GGATG 9 cut(s) 196, 392, 504, 577, 943, 1197, 1216, 1375, 1615
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 2 cut(s) 1207, 1241
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 59, 903, 1467
BseNI ACTGG 2 cut(s) 1624, 1670
BseXI GCAGC 3 cut(s) 262, 599, 1047
Bsh1236I CGCG 1 cut(s) 1229
Bsh1285I CGRYCG 1 cut(s) 1536
BshFI GGCC 1 cut(s) 144
BshVI ATCGAT 1 cut(s) 1665
BsiEI CGRYCG 1 cut(s) 1536
BsiHKAI GWGCWC 1 cut(s) 768
BsiHKCI CYCGRG 1 cut(s) 974
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 2 cut(s) 1207, 1241
BsmAI GTCTC 5 cut(s) 607, 1278, 1456, 1457, 1657
BsmFI GGGAC 1 cut(s) 1019
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 3 cut(s) 607, 1456, 1457
BsoBI CYCGRG 1 cut(s) 974
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 5 cut(s) 97, 774, 978, 1588, 1666
Bsp68I TCGCGA 1 cut(s) 1229
BspACI CCGC 4 cut(s) 64, 206, 590, 1536
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 3 cut(s) 58, 902, 1466
BspDI ATCGAT 1 cut(s) 1665
BspFNI CGCG 1 cut(s) 1229
BspHI TCATGA 2 cut(s) 325, 694
BspLI GGNNCC 1 cut(s) 1184
BspMI ACCTGC 2 cut(s) 148, 200
BspPI GGATC 1 cut(s) 1661
BspT104I TTCGAA 1 cut(s) 276
BspTNI GGTCTC 3 cut(s) 607, 1456, 1457
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 2 cut(s) 1624, 1670
BssECI CCNNGG 4 cut(s) 120, 921, 1170, 1296
BssMI GATC 5 cut(s) 97, 774, 978, 1588, 1666
BssSI CACGAG 1 cut(s) 1560
BssT1I CCWWGG 2 cut(s) 921, 1296
Bst2BI CACGAG 1 cut(s) 1560
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 859, 1680
Bst6I CTCTTC 1 cut(s) 1512
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 312, 603, 1058
BstDEI CTNAG 7 cut(s) 45, 368, 494, 607, 889, 1337, 1453
BstF5I GGATG 9 cut(s) 196, 392, 504, 577, 943, 1197, 1216, 1375, 1615
BstFNI CGCG 1 cut(s) 1229
BstKTI GATC 5 cut(s) 100, 777, 981, 1591, 1669
BstMAI GTCTC 5 cut(s) 607, 1278, 1456, 1457, 1657
BstMBI GATC 5 cut(s) 97, 774, 978, 1588, 1666
BstMCI CGRYCG 1 cut(s) 1536
BstMWI GCNNNNNNNGC 3 cut(s) 458, 1136, 1145
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 3 cut(s) 314, 661, 1412
BstSCI CCNGG 1 cut(s) 120
BstUI CGCG 1 cut(s) 1229
BstV1I GCAGC 3 cut(s) 262, 599, 1047
BstV2I GAAGAC 2 cut(s) 1197, 1468
BstX2I RGATCY 2 cut(s) 774, 978
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 2 cut(s) 774, 978
Bsu15I ATCGAT 1 cut(s) 1665
Bsu36I CCTNAGG 1 cut(s) 889
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 1665
BtsCI GGATG 9 cut(s) 196, 392, 504, 577, 943, 1197, 1216, 1375, 1615
BtsI GCAGTG 1 cut(s) 1081
BtsIMutI CAGTG 5 cut(s) 864, 1081, 1617, 1676, 1677
BtuMI TCGCGA 1 cut(s) 1229
BveI ACCTGC 2 cut(s) 148, 200
Cac8I GCNNGC 3 cut(s) 312, 603, 1058
CciI TCATGA 2 cut(s) 325, 694
ClaI ATCGAT 1 cut(s) 1665
CseI GACGC 1 cut(s) 242
Csp6I GTAC 6 cut(s) 340, 847, 960, 1121, 1216, 1615
CviQI GTAC 6 cut(s) 340, 847, 960, 1121, 1216, 1615
DdeI CTNAG 7 cut(s) 45, 368, 494, 607, 889, 1337, 1453
DpnI GATC 5 cut(s) 99, 776, 980, 1590, 1668
DpnII GATC 5 cut(s) 97, 774, 978, 1588, 1666
DraI TTTAAA 1 cut(s) 1143
Eam1104I CTCTTC 1 cut(s) 1512
EarI CTCTTC 1 cut(s) 1512
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 921, 1296
Eco24I GRGCYC 1 cut(s) 768
Eco31I GGTCTC 3 cut(s) 607, 1456, 1457
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 1 cut(s) 1008
Eco81I CCTNAGG 1 cut(s) 889
Eco88I CYCGRG 1 cut(s) 974
EcoICRI GAGCTC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 921, 1296
EcoT22I ATGCAT 3 cut(s) 312, 504, 955
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 2 cut(s) 921, 1296
FalI AAGNNNNNCTT 2 cut(s) 1509, 1541
FaqI GGGAC 1 cut(s) 1019
FauNDI CATATG 2 cut(s) 306, 955
Fnu4HI GCNGC 4 cut(s) 207, 251, 588, 1061
FokI GGATG 9 cut(s) 203, 379, 511, 564, 950, 1184, 1223, 1382, 1622
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 4 cut(s) 207, 251, 588, 1061
FspBI CTAG 5 cut(s) 518, 780, 797, 1383, 1419
GluI GCNGC 4 cut(s) 207, 251, 588, 1061
GsuI CTGGAG 1 cut(s) 1641
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 1 cut(s) 242
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 472, 1137
HinfI GANTC 2 cut(s) 554, 1496
HphI GGTGA 4 cut(s) 344, 518, 529, 539
Hpy166II GTNNAC 2 cut(s) 163, 1617
Hpy188I TCNGA 5 cut(s) 11, 200, 397, 1277, 1456
Hpy188III TCNNGA 6 cut(s) 184, 326, 632, 695, 976, 1228
Hpy8I GTNNAC 2 cut(s) 163, 1617
HpyAV CCTTC 3 cut(s) 434, 1245, 1498
HpyCH4III ACNGT 2 cut(s) 859, 1680
HpyCH4IV ACGT 1 cut(s) 1632
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 1136, 1145
HpyF3I CTNAG 7 cut(s) 45, 368, 494, 607, 889, 1337, 1453
HpySE526I ACGT 1 cut(s) 1632
Kzo9I GATC 5 cut(s) 97, 774, 978, 1588, 1666
LmnI GCTCC 3 cut(s) 763, 811, 1188
Lsp1109I GCAGC 3 cut(s) 262, 599, 1047
LweI GCATC 7 cut(s) 232, 409, 489, 514, 700, 940, 1536
MaeI CTAG 5 cut(s) 518, 780, 797, 1383, 1419
MaeII ACGT 1 cut(s) 1632
MaeIII GTNAC 3 cut(s) 428, 653, 1291
MalI GATC 5 cut(s) 99, 776, 980, 1590, 1668
MboI GATC 5 cut(s) 97, 774, 978, 1588, 1666
MboII GAAGA 7 cut(s) 521, 533, 980, 1054, 1202, 1468, 1529
MfeI CAATTG 2 cut(s) 237, 1012
MflI RGATCY 2 cut(s) 774, 978
MhlI GDGCHC 1 cut(s) 768
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 3 cut(s) 1222, 1255, 1371
MnlI CCTC 9 cut(s) 54, 127, 180, 627, 898, 1078, 1165, 1294, 1600
Mph1103I ATGCAT 3 cut(s) 312, 504, 955
MroXI GAANNNNTTC 2 cut(s) 993, 1521
MseI TTAA 8 cut(s) 108, 446, 470, 572, 1142, 1308, 1527, 1569
MslI CAYNNNNRTG 4 cut(s) 309, 330, 1309, 1622
MspA1I CMGCKG 2 cut(s) 590, 1538
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 2 cut(s) 237, 1012
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 1229
MwoI GCNNNNNNNGC 3 cut(s) 458, 1136, 1145
NdeI CATATG 2 cut(s) 306, 955
NdeII GATC 5 cut(s) 97, 774, 978, 1588, 1666
NlaIV GGNNCC 1 cut(s) 1184
NmeAIII GCCGAG 1 cut(s) 1195
NmuCI GTSAC 1 cut(s) 1291
NruI TCGCGA 1 cut(s) 1229
NsiI ATGCAT 3 cut(s) 312, 504, 955
NspI RCATGY 3 cut(s) 314, 661, 1412
NspV TTCGAA 1 cut(s) 276
OliI CACNNNNGTG 1 cut(s) 1622
PaeI GCATGC 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 974
PagI TCATGA 2 cut(s) 325, 694
PciI ACATGT 1 cut(s) 657
PdmI GAANNNNTTC 2 cut(s) 993, 1521
PfeI GAWTC 1 cut(s) 1496
PkrI GCNGC 4 cut(s) 208, 252, 589, 1062
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PscI ACATGT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 768
Psp1406I AACGTT 1 cut(s) 1632
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 1184
PsuI RGATCY 2 cut(s) 774, 978
RruI TCGCGA 1 cut(s) 1229
RsaI GTAC 6 cut(s) 341, 848, 961, 1122, 1217, 1616
RsaNI GTAC 6 cut(s) 340, 847, 960, 1121, 1216, 1615
RseI CAYNNNNRTG 4 cut(s) 309, 330, 1309, 1622
SacI GAGCTC 1 cut(s) 768
SaqAI TTAA 8 cut(s) 108, 446, 470, 572, 1142, 1308, 1527, 1569
SatI GCNGC 4 cut(s) 207, 251, 588, 1061
Sau3AI GATC 5 cut(s) 97, 774, 978, 1588, 1666
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 7 cut(s) 232, 409, 489, 514, 700, 940, 1536
Sfr274I CTCGAG 1 cut(s) 974
SfuI TTCGAA 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 974
SmiMI CAYNNNNRTG 4 cut(s) 309, 330, 1309, 1622
SmlI CTYRAG 3 cut(s) 551, 974, 1149
SmoI CTYRAG 3 cut(s) 551, 974, 1149
SphI GCATGC 1 cut(s) 314
SsiI CCGC 4 cut(s) 64, 206, 590, 1536
SspMI CTAG 5 cut(s) 518, 780, 797, 1383, 1419
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 921, 1296
TaaI ACNGT 2 cut(s) 859, 1680
TaiI ACGT 1 cut(s) 1635
TaqI TCGA 5 cut(s) 276, 300, 975, 1259, 1665
TatI WGTACW 4 cut(s) 846, 1120, 1215, 1614
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 1496
Tru1I TTAA 8 cut(s) 108, 446, 470, 572, 1142, 1308, 1527, 1569
Tru9I TTAA 8 cut(s) 108, 446, 470, 572, 1142, 1308, 1527, 1569
TscAI CASTG 5 cut(s) 864, 1081, 1624, 1677, 1683
TseFI GTSAC 1 cut(s) 1291
TseI GCWGC 3 cut(s) 250, 587, 1060
Tsp45I GTSAC 1 cut(s) 1291
TspRI CASTG 5 cut(s) 864, 1081, 1624, 1677, 1683
XapI RAATTY 4 cut(s) 39, 73, 899, 1332
XceI RCATGY 3 cut(s) 314, 661, 1412
XhoI CTCGAG 1 cut(s) 974
XmnI GAANNNNTTC 2 cut(s) 993, 1521
XspI CTAG 5 cut(s) 518, 780, 797, 1383, 1419
Zsp2I ATGCAT 3 cut(s) 312, 504, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.