RchiOBHm_Chr1g0326311

synthase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
14647527 .. 14648574
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55595

Sequence Viewer

Length: 708 bp
ATGCCCAGGATTGAAGCAAGGCATTACTTGTCTATTTACCAAGAAGATGATTCACATAATGAAACTCTCCTGAATTTTGCAAAGCTGGATTTCAACACTGTGCAGAAAGTTCATCAGAAAGAACTAAGCGAAATTACGTGGTGGTGGAAGGACTTGGACTTTGTAGCCAAGCTACCTTTTGCAAGAGACAAGATAGTTGAGGCCTATTTTTGGGCTTTTGCAGTCTACTTTCAGCCGGAATATTACTTTGCCAGGATGGTATTAGCAAAAACTATTGCTATAATTACAGTCATTGACGACATATACGATGTGCGTGGCACGTATGAAGAACTAGAGAGCTTTACTGAAGCTATTGAGAGGTGGAACACTTCTGTCGTTGATCAACTACCAGATTATATGAAAGTGTGTTATGAAGTGCTGTTGAATTTCTTCACCAAACTTGAAGAAAGTCTTGCGAATAAGGGAATCTTATACCGCCTCCACTATGCGAGAGAAGCATTTAAAGTTCAAGTCAGAGCTTACTTCCAGGAAGCGAAATGGTTGAAACAAAAGTACACACCAACAATGGAAGAGGATATGTCTGTGGAACGCAATACATCCTTCTTCATGTTGGCAGTAGTGTCATTTGTTGGAATGGGAGTTATTGTTAGAAAAGACTCCATGGATTGGGTTTTCAGTGAACCTAAGATTTCAAAGCCGCATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

235

Amino Acids

28.07

Weight (kDa)

5.36

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 50 - 231 9.7e-65 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 90 - 223 2.3e-30 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 666
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 475, 698
AcsI RAATTY 2 cut(s) 73, 424
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 2 cut(s) 210, 666
AgsI TTSAA 7 cut(s) 14, 94, 424, 443, 509, 544, 693
AjnI CCWGG 3 cut(s) 5, 251, 525
AluBI AGCT 5 cut(s) 85, 172, 339, 350, 518
AluI AGCT 5 cut(s) 85, 172, 339, 350, 518
Alw26I GTCTC 1 cut(s) 180
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 73, 424
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 428
AsuHPI GGTGA 1 cut(s) 424
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 3 cut(s) 7, 253, 527
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 698
BlsI GCNGC 1 cut(s) 699
Bme1390I CCNGG 3 cut(s) 7, 253, 527
BmrFI CCNGG 3 cut(s) 7, 253, 527
BsaAI YACGTR 2 cut(s) 138, 321
BsaJI CCNNGG 2 cut(s) 5, 660
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 666
BseBI CCWGG 3 cut(s) 7, 253, 527
BseDI CCNNGG 2 cut(s) 5, 660
BseGI GGATG 2 cut(s) 261, 596
BseLI CCNNNNNNNGG 2 cut(s) 210, 666
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 210, 666
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 660
BspACI CCGC 2 cut(s) 475, 698
BspANI GGCC 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 5, 660
BssMI GATC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 3 cut(s) 7, 253, 527
Bst4CI ACNGT 2 cut(s) 100, 289
Bst6I CTCTTC 1 cut(s) 564
BstBAI YACGTR 2 cut(s) 138, 321
BstDEI CTNAG 2 cut(s) 125, 684
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 2 cut(s) 261, 596
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 3 cut(s) 7, 253, 527
BstSCI CCNGG 3 cut(s) 5, 251, 525
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 261, 596
BtsIMutI CAGTG 2 cut(s) 96, 682
Csp6I GTAC 1 cut(s) 553
CviAII CATG 2 cut(s) 607, 661
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 2 cut(s) 125, 684
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
DraI TTTAAA 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 366
EcoRII CCWGG 3 cut(s) 5, 251, 525
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 2 cut(s) 610, 664
FalI AAGNNNNNCTT 4 cut(s) 435, 467, 452, 484
FatI CATG 2 cut(s) 606, 660
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 698
FokI GGATG 2 cut(s) 268, 583
Fsp4HI GCNGC 1 cut(s) 698
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 236
Hin1II CATG 2 cut(s) 610, 664
HinfI GANTC 3 cut(s) 50, 465, 656
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 226, 555, 680
Hpy188I TCNGA 2 cut(s) 117, 515
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 226, 555, 680
HpyAV CCTTC 2 cut(s) 142, 610
HpyCH4III ACNGT 2 cut(s) 100, 289
HpyCH4IV ACGT 2 cut(s) 137, 320
HpyCH4V TGCA 4 cut(s) 80, 103, 182, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 125, 684
HpySE526I ACGT 2 cut(s) 137, 320
Hsp92II CATG 2 cut(s) 610, 664
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 19, 71, 83, 238, 249, 265, 402, 512, 539
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 137, 320
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 6 cut(s) 56, 338, 421, 455, 581, 595
MluCI AATT 4 cut(s) 73, 132, 282, 424
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 4 cut(s) 193, 351, 488, 565
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 1 cut(s) 501
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 7, 253, 527
MvaI CCWGG 3 cut(s) 7, 253, 527
MwoI GCNNNNNNNGC 1 cut(s) 494
NcoI CCATGG 1 cut(s) 660
NdeII GATC 1 cut(s) 379
NlaIII CATG 2 cut(s) 610, 664
PceI AGGCCT 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 50, 465
PflMI CCANNNNNTGG 1 cut(s) 666
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 1 cut(s) 699
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Ppu21I YACGTR 2 cut(s) 138, 321
Psp6I CCWGG 3 cut(s) 5, 251, 525
PspGI CCWGG 3 cut(s) 5, 251, 525
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 698
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 7, 253, 527
Sse9I AATT 4 cut(s) 73, 132, 282, 424
SseBI AGGCCT 1 cut(s) 203
SsiI CCGC 2 cut(s) 475, 698
SspI AATATT 1 cut(s) 242
SspMI CTAG 1 cut(s) 332
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 5, 251, 525
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 2 cut(s) 100, 289
TaiI ACGT 2 cut(s) 140, 323
TasI AATT 4 cut(s) 73, 132, 282, 424
TatI WGTACW 1 cut(s) 552
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 2 cut(s) 50, 465
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 2 cut(s) 103, 682
TspDTI ATGAA 6 cut(s) 75, 101, 339, 413, 426, 595
TspRI CASTG 2 cut(s) 103, 682
Van91I CCANNNNNTGG 1 cut(s) 666
XapI RAATTY 2 cut(s) 73, 424
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.