Rorug03G0138000

synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
11314896 .. 11316050
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138000.1

Sequence Viewer

Length: 621 bp
ATGCTGATCGAACGGAAGCGACAAGATCTGGCCGAGGCTATGAAGCTCTGGTTGGAGAAGCTTGAAGAGATAGCTCATCTGGCCGATGATGTATTGGATGACTACGGATATGAGCTTCTTCGGCGTAAGGTGGAACTACGGAACCAGATGAAGAAAAAGGGGATCTTCGAGAATCTTAATCCTAAACACGCTGTAATACAAGCTATAGATGCAATATTGGGAATCCTCAAAAAAGATTTGAAAGAGAAAAGATATCTTCTTGTGCTTGATCATGTTCGGAATGAAGATGCTCAAAAATGGGAAGAACTGATCAGTTGTTTGTTATACATCAATGATACCCAAGGAAGCAGCATCCTTGTCACTACCCGCAACGACAAAGTTGCAAAAATGGTGGAGACCCTTCCTAGACGTGAATTGAAAAAACTATCAGATGATGAATGTTGGCTCATATTGAAGGACAGAGCAATTCCAGTTGGGAATGCTCTTGTAGTTGGAGATCAGGAGAAAATTGGAAGGGAGATTGCTAAAAAGTGTGGAGGTGTACCATTAGTAGCACAGAGCAAGAGGAAGAATCATGCAAACCACCCTATGCAAAATTTCAGCCAAATTGATAATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

23.83

Weight (kDa)

8.85

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 49 3.2e-08 Rx N-terminal domain
NB-ARC PF00931 72 - 156 1.6e-11 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 2 cut(s) 30, 81
AcsI RAATTY 1 cut(s) 595
AfaI GTAC 1 cut(s) 543
AgsI TTSAA 4 cut(s) 65, 241, 418, 454
AjiI CACGTC 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 5 cut(s) 46, 61, 74, 115, 203
AluI AGCT 5 cut(s) 46, 61, 74, 115, 203
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 1 cut(s) 170
AoxI GGCC 2 cut(s) 30, 81
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 595
BbvI GCAGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BclI TGATCA 2 cut(s) 268, 309
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 143
BmsI GCATC 3 cut(s) 199, 277, 360
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 33, 340
Bse1I ACTGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 33, 340
BseGI GGATG 2 cut(s) 103, 351
BseNI ACTGG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 360
BshFI GGCC 2 cut(s) 32, 83
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 2 cut(s) 32, 83
Bso31I GGTCTC 1 cut(s) 389
Bsp143I GATC 6 cut(s) 6, 25, 162, 268, 309, 496
BspACI CCGC 1 cut(s) 367
BspANI GGCC 2 cut(s) 32, 83
BspLI GGNNCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 2 cut(s) 33, 340
BssMI GATC 6 cut(s) 6, 25, 162, 268, 309, 496
BssT1I CCWWGG 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 60
BstF5I GGATG 2 cut(s) 103, 351
BstKTI GATC 6 cut(s) 9, 28, 165, 271, 312, 499
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 6 cut(s) 6, 25, 162, 268, 309, 496
BstMWI GCNNNNNNNGC 3 cut(s) 80, 121, 209
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 25, 162
BstYI RGATCY 2 cut(s) 25, 162
BsuRI GGCC 2 cut(s) 32, 83
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 103, 351
Csp6I GTAC 1 cut(s) 542
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 2 cut(s) 272, 575
CviQI GTAC 1 cut(s) 542
DpnI GATC 6 cut(s) 8, 27, 164, 270, 311, 498
DpnII GATC 6 cut(s) 6, 25, 162, 268, 309, 496
EaeI YGGCCR 2 cut(s) 30, 81
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 254
EcoRV GATATC 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 2 cut(s) 275, 578
FaiI YATR 8 cut(s) 41, 111, 206, 273, 325, 449, 576, 590
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 2 cut(s) 271, 574
FauI CCCGC 1 cut(s) 374
FbaI TGATCA 2 cut(s) 268, 309
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 2 cut(s) 110, 338
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 405
GluI GCNGC 1 cut(s) 349
HaeIII GGCC 2 cut(s) 32, 83
Hin1II CATG 2 cut(s) 275, 578
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 3 cut(s) 172, 222, 571
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 2 cut(s) 279, 430
Hpy188III TCNNGA 2 cut(s) 169, 500
Hpy8I GTNNAC 1 cut(s) 542
HpyAV CCTTC 3 cut(s) 410, 448, 507
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 4 cut(s) 212, 383, 578, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 121, 209
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 275, 578
Ksp22I TGATCA 2 cut(s) 268, 309
Kzo9I GATC 6 cut(s) 6, 25, 162, 268, 309, 496
LpnPI CCDG 6 cut(s) 14, 34, 65, 158, 483, 485
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 3 cut(s) 199, 277, 360
MaeI CTAG 1 cut(s) 405
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 358
MalI GATC 6 cut(s) 8, 27, 164, 270, 311, 498
MboI GATC 6 cut(s) 6, 25, 162, 268, 309, 496
MboII GAAGA 8 cut(s) 77, 110, 157, 163, 248, 296, 314, 580
MflI RGATCY 2 cut(s) 25, 162
MluCI AATT 5 cut(s) 413, 465, 507, 595, 606
MmeI TCCRAC 2 cut(s) 33, 472
MnlI CCTC 4 cut(s) 28, 236, 530, 558
MseI TTAA 2 cut(s) 177, 619
Mva1269I GAATGC 1 cut(s) 484
MwoI GCNNNNNNNGC 3 cut(s) 80, 121, 209
NdeII GATC 6 cut(s) 6, 25, 162, 268, 309, 496
NlaIII CATG 2 cut(s) 275, 578
NlaIV GGNNCC 1 cut(s) 143
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 358
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 3 cut(s) 172, 222, 571
PkrI GCNGC 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 143
PsuI RGATCY 2 cut(s) 25, 162
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
SaqAI TTAA 2 cut(s) 177, 619
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 6 cut(s) 6, 25, 162, 268, 309, 496
SetI ASST 8 cut(s) 48, 63, 76, 117, 132, 205, 412, 541
SfaNI GCATC 3 cut(s) 199, 277, 360
SfcI CTRYAG 1 cut(s) 204
Sse9I AATT 5 cut(s) 413, 465, 507, 595, 606
SsiI CCGC 1 cut(s) 367
SspI AATATT 1 cut(s) 216
SspMI CTAG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 340
TaiI ACGT 1 cut(s) 412
TaqI TCGA 2 cut(s) 9, 168
TasI AATT 5 cut(s) 413, 465, 507, 595, 606
TfiI GAWTC 3 cut(s) 172, 222, 571
Tru1I TTAA 2 cut(s) 177, 619
Tru9I TTAA 2 cut(s) 177, 619
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 4 cut(s) 56, 164, 297, 450
TspGWI ACGGA 3 cut(s) 28, 120, 154
XapI RAATTY 1 cut(s) 595
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.