Rorug05G0518400

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000053
Physical Location & Seq
Reverse (-)
70290735 .. 70292673
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0518400.1

Sequence Viewer

Length: 1836 bp
ATGATTCGCAAAACTCGTCCTTGTTGTTGCAGCAGCAGCAGCACAAGAGGTATGCCATTTCTTCACTCTCCCACTCTTGTTGTTTTCATCAACAATTACATGAGCACAAGAAGCAGAGGGCTTCATTCTCAACCCTCAACCCCAGCTAAATCTAGAGAAATCCATCGAGGGAAGCTTTTGAGAGACAACTACCCTAAACCCTCTGTGCCCAAAGTCTGTAACCCCGAACATGCCTTGAAGGTGTTCGATGAAATGCTTCAAAGGCGTCCTTTGCCTTCGATTGTCCGTTTCACTCAGATTTTGGGCCAACTTGTCAAATTGAAACACTATTCTCAAGTCATCGCTTTGAATAGACGAATGGGTCTGATCGGAATCGCTTCTGATGTTTATACTCTGTCTATTATCATCAACTGTTATTGCCATTTGAATCAAATGGGGTTTAGCTTATCTGTCTTGGGGCAATACTTCAAATTGGGTCTTCAACCAGATGTCACCACCTACACTACTCTAATCAACGGCTTTGTTCTCAAGAATAAAATGGCAGAGGCAGCAGGGATTTTCAGCAAAATGCTGCAGGCAGGTCACTGTGTGCCCAATGTGGTTACTTTCAACACACTAATAAAGGGACTTTGCATGAGGGGTGACAACACTGCAGCTATTCAATTGCTCAGGAACATGGAAGAAAGAGGTCGTAAGCCTGACATATTTACCTATAGCACCATCATTGACAGTCTTTGCAAGGATACCCTAGTGGTTGATGCACTGAACCTCTTCTCAGAAATGATTAGTAGGGGCGTTGCTCCAGACGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAACATAGGTCAGTGGAAAGAAGCTAAAAGTTTGTTGAATGAAATGGTCAGTAGAAACATCTGTCCGAATGTATTCACCTTCAATGTCTTGGTTGATGGACTTTGTAAGGAGGGAATGGTCGTGGAAGCCAAAAGTGTGATTGAAATGATGATCCAAAGAGGTATTGAGCCTGATACGATTACATACAACTCACTTATGGACGGTTACTGTTTGCGGGGAAAAATGGATGAAGCAAGAAAAGTCTTTGATCTAATGCTTAGCAAGGCCTGCATGGTTAATGTTCGTAGTTGTAGTATATTGATAAATGGATACTGTAAGCTTAAACAGATTGATCAGGCCAACCAGGTTTTTCAAGAAATGCTTCATAGGGAACTTGTTCCAGATACCATCACTTACAGCACTCTTATTGACGGTTTTTGTAAAGCAGGAAGAATACGGGTAGCAGAGAAGTTGTTTTCTCAGATGCAAGGTTGTGGTCAACTTCCAGATGTTCAAACTTACGCCATTCTAATGAATGGCCTATGTGGAAACAAGCAACTTTCAACGGCAGTGGAACTGCTTAGAGAGATGGAAGATAACAAGTTGGAAGTAAGTATCATAATTTACACCATCATCATTGAAGGTTTGTGCAAAGCTGGAAAACTTGAATCTGCAACAGATGTCTTCTCTAGTTTGTCTTCAAAAAGAGTTCAGCCTGATCTGAAGGCATATACTGTGATGATTAATGGACTGTGTAATGGAGGCCTATTGGCTGAAGCAGAAAAGTTGCTTAGAGAGATGGGAGAGAAAGGCTGTTCTCCCGATGGTTGTACCTATAACATAATTATCCGAGGATTTATCAATAACAATGAGACATCAAGGGCTGTGGGACTTATTCAAGAAATGGTGGAGATGGGGTTTTCTGCAGATGCATCAACTACGGAATTGATAATTGATTTGTTGTCTAAAGATAAAGTAGATCCAGCTTTGTTGTCATTGTTAAAGAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

611

Amino Acids

67.92

Weight (kDa)

8.68

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 157 - 208 7.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 159 - 190 2.3e-07 PPR repeat
PPR_1 PF12854 196 - 227 6.4e-11 PPR repeat
PPR_2 PF13041 198 - 247 3.2e-18 PPR repeat family
PPR_3 PF13812 198 - 243 2.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 229 - 261 1.2e-10 PPR repeat
PPR PF01535 236 - 266 7e-06 PPR repeat
PPR_2 PF13041 237 - 282 1.5e-14 PPR repeat family
PPR_long PF17177 252 - 347 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 257 - 312 3.8e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 264 - 297 1.1e-10 PPR repeat
PPR_2 PF13041 268 - 317 3e-19 PPR repeat family
PPR PF01535 271 - 301 3.1e-07 PPR repeat
PPR_1 PF12854 299 - 331 2.1e-10 PPR repeat
PPR_2 PF13041 303 - 351 4e-16 PPR repeat family
PPR PF01535 306 - 336 2.3e-07 PPR repeat
PPR_3 PF13812 327 - 385 2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 334 - 366 5.8e-13 PPR repeat
PPR_2 PF13041 338 - 387 6.1e-16 PPR repeat family
PPR PF01535 341 - 369 1.2e-08 PPR repeat
PPR_2 PF13041 374 - 422 5e-16 PPR repeat family
TPR_24 PF23276 394 - 505 5.3e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 405 - 437 3.6e-14 PPR repeat
PPR_2 PF13041 408 - 456 8e-17 PPR repeat family
PPR PF01535 411 - 440 6e-08 PPR repeat
PPR_1 PF12854 440 - 472 2.1e-07 PPR repeat
PPR_3 PF13812 467 - 523 4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 477 - 504 8.8e-07 PPR repeat
PPR_2 PF13041 479 - 527 1.2e-13 PPR repeat family
PPR_3 PF13812 509 - 560 1.7e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 510 - 541 2.3e-08 PPR repeat
PPR PF01535 517 - 546 3.4e-07 PPR repeat
PPR_2 PF13041 517 - 561 1.5e-13 PPR repeat family
PPR_1 PF12854 544 - 577 5.1e-06 PPR repeat
PPR_2 PF13041 551 - 596 8.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 569
AciI CCGC 1 cut(s) 1057
AclWI GGATC 2 cut(s) 988, 1796
AcuI CTGAAG 2 cut(s) 1565, 1617
AcyI GRCGYC 1 cut(s) 265
AdeI CACNNNGTG 1 cut(s) 589
AfaI GTAC 1 cut(s) 1654
AjnI CCWGG 1 cut(s) 1185
AluBI AGCT 8 cut(s) 146, 175, 444, 656, 866, 1162, 1478, 1808
AluI AGCT 8 cut(s) 146, 175, 444, 656, 866, 1162, 1478, 1808
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 177, 1688
AlwI GGATC 2 cut(s) 988, 1796
AoxI GGCC 5 cut(s) 304, 1107, 1179, 1360, 1585
ApeKI GCWGC 7 cut(s) 30, 33, 36, 39, 548, 571, 653
AseI ATTAAT 1 cut(s) 1566
Asp700I GAANNNNTTC 7 cut(s) 242, 255, 376, 770, 914, 1203, 1218
AspS9I GGNCC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 484, 653, 910
BaeGI GKGCMC 2 cut(s) 210, 594
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BbsI GAAGAC 3 cut(s) 470, 1498, 1512
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 7 cut(s) 42, 45, 48, 51, 558, 560, 665
BccI CCATC 9 cut(s) 171, 728, 932, 1238, 1405, 1460, 1615, 1640, 1729
BceAI ACGGC 2 cut(s) 532, 1404
BciT130I CCWGG 1 cut(s) 1187
BciVI GTATCC 2 cut(s) 736, 1145
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 2 cut(s) 177, 1688
BfaI CTAG 3 cut(s) 153, 749, 1512
BfmI CTRYAG 4 cut(s) 572, 651, 712, 1746
BfuAI ACCTGC 1 cut(s) 569
BfuI GTATCC 2 cut(s) 736, 1145
BisI GCNGC 7 cut(s) 31, 34, 37, 40, 549, 572, 654
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 7 cut(s) 32, 35, 38, 41, 550, 573, 655
Bme1390I CCNGG 1 cut(s) 1187
BmgT120I GGNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 1187
BmsI GCATC 4 cut(s) 748, 1296, 1741, 1763
BpiI GAAGAC 3 cut(s) 470, 1498, 1512
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 668
Bpu1102I GCTNAGC 1 cut(s) 1100
BpuEI CTTGAG 2 cut(s) 318, 512
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 1672
BsaXI ACNNNNNCTCC 2 cut(s) 1724, 1754
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 1 cut(s) 1187
BseDI CCNNGG 1 cut(s) 1672
BseGI GGATG 1 cut(s) 1075
BseJI GATNNNNATC 1 cut(s) 371
BseMII CTCAG 4 cut(s) 308, 682, 789, 1316
BseSI GKGCMC 2 cut(s) 210, 594
BseXI GCAGC 7 cut(s) 42, 45, 48, 51, 558, 560, 665
BseYI CCCAGC 1 cut(s) 142
BshFI GGCC 5 cut(s) 306, 1109, 1181, 1362, 1587
BsiHKAI GWGCWC 1 cut(s) 107
BslFI GGGAC 2 cut(s) 639, 1725
BsmAI GTCTC 2 cut(s) 177, 1688
BsmFI GGGAC 2 cut(s) 639, 1725
BsnI GGCC 5 cut(s) 306, 1109, 1181, 1362, 1587
Bsp1286I GDGCHC 3 cut(s) 107, 210, 594
Bsp143I GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
Bsp1720I GCTNAGC 1 cut(s) 1100
BspACI CCGC 1 cut(s) 1057
BspANI GGCC 5 cut(s) 306, 1109, 1181, 1362, 1587
BspCNI CTCAG 4 cut(s) 307, 681, 788, 1315
BspHI TCATGA 1 cut(s) 1832
BspMAI CTGCAG 3 cut(s) 576, 655, 1750
BspMI ACCTGC 1 cut(s) 569
BspPI GGATC 2 cut(s) 988, 1796
BssECI CCNNGG 1 cut(s) 1672
BssMI GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 1187
Bst4CI ACNGT 9 cut(s) 413, 587, 731, 1046, 1052, 1157, 1256, 1558, 1575
Bst6I CTCTTC 1 cut(s) 776
BstACI GRCGYC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 1110
BstC8I GCNNGC 2 cut(s) 576, 1111
BstDEI CTNAG 7 cut(s) 294, 668, 775, 1100, 1302, 1403, 1613
BstF5I GGATG 1 cut(s) 1075
BstKTI GATC 6 cut(s) 369, 996, 1093, 1177, 1543, 1804
BstMAI GTCTC 2 cut(s) 177, 1688
BstMBI GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
BstMWI GCNNNNNNNGC 7 cut(s) 36, 39, 111, 262, 271, 548, 1110
BstNI CCWGG 1 cut(s) 1187
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 1185
BstSFI CTRYAG 4 cut(s) 572, 651, 712, 1746
BstSLI GKGCMC 2 cut(s) 210, 594
BstV1I GCAGC 7 cut(s) 42, 45, 48, 51, 558, 560, 665
BstV2I GAAGAC 3 cut(s) 470, 1498, 1512
BstX2I RGATCY 1 cut(s) 1801
BstYI RGATCY 1 cut(s) 1801
BsuI GTATCC 2 cut(s) 736, 1145
BsuRI GGCC 5 cut(s) 306, 1109, 1181, 1362, 1587
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 1075
BtsI GCAGTG 2 cut(s) 648, 1398
BtsIMutI CAGTG 5 cut(s) 583, 648, 761, 860, 1398
BveI ACCTGC 1 cut(s) 569
Cac8I GCNNGC 2 cut(s) 576, 1111
CciI TCATGA 1 cut(s) 1832
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 1185
Csp6I GTAC 1 cut(s) 1653
CspCI CAANNNNNGTGG 6 cut(s) 61, 96, 1374, 1409, 1689, 1724
CviAII CATG 6 cut(s) 100, 230, 634, 676, 1114, 1833
CviQI GTAC 1 cut(s) 1653
DdeI CTNAG 7 cut(s) 294, 668, 775, 1100, 1302, 1403, 1613
DpnI GATC 6 cut(s) 368, 995, 1092, 1176, 1542, 1803
DpnII GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
DraIII CACNNNGTG 1 cut(s) 589
DrdI GACNNNNNNGTC 1 cut(s) 360
DseDI GACNNNNNNGTC 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
Eco147I AGGCCT 2 cut(s) 1109, 1587
Eco57I CTGAAG 2 cut(s) 1565, 1617
EcoRII CCWGG 1 cut(s) 1185
EcoT22I ATGCAT 1 cut(s) 1756
FaeI CATG 6 cut(s) 103, 233, 637, 679, 1117, 1836
FalI AAGNNNNNCTT 4 cut(s) 253, 285, 1188, 1220
FaqI GGGAC 2 cut(s) 639, 1725
FatI CATG 6 cut(s) 99, 229, 633, 675, 1113, 1832
FauI CCCGC 1 cut(s) 1050
FbaI TGATCA 1 cut(s) 1174
Fnu4HI GCNGC 7 cut(s) 31, 34, 37, 40, 549, 572, 654
FokI GGATG 1 cut(s) 1082
Fsp4HI GCNGC 7 cut(s) 31, 34, 37, 40, 549, 572, 654
FspBI CTAG 3 cut(s) 153, 749, 1512
GluI GCNGC 7 cut(s) 31, 34, 37, 40, 549, 572, 654
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 5 cut(s) 306, 1109, 1181, 1362, 1587
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 6 cut(s) 103, 233, 637, 679, 1117, 1836
HincII GTYRAC 1 cut(s) 1322
HindII GTYRAC 1 cut(s) 1322
HindIII AAGCTT 2 cut(s) 173, 1160
HinfI GANTC 5 cut(s) 4, 372, 427, 829, 1490
HphI GGTGA 3 cut(s) 484, 653, 910
Hpy166II GTNNAC 1 cut(s) 1322
Hpy188I TCNGA 9 cut(s) 297, 366, 371, 382, 778, 909, 1305, 1545, 1673
Hpy8I GTNNAC 1 cut(s) 1322
HpyAV CCTTC 5 cut(s) 232, 285, 931, 1457, 1540
HpyCH4III ACNGT 9 cut(s) 413, 587, 731, 1046, 1052, 1157, 1256, 1558, 1575
HpyCH4IV ACGT 1 cut(s) 807
HpyF10VI GCNNNNNNNGC 7 cut(s) 36, 39, 111, 262, 271, 548, 1110
HpyF3I CTNAG 7 cut(s) 294, 668, 775, 1100, 1302, 1403, 1613
HpySE526I ACGT 1 cut(s) 807
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 6 cut(s) 103, 233, 637, 679, 1117, 1836
Ksp22I TGATCA 1 cut(s) 1174
Kzo9I GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 7 cut(s) 42, 45, 48, 51, 558, 560, 665
LweI GCATC 4 cut(s) 748, 1296, 1741, 1763
MabI ACCWGGT 1 cut(s) 1185
MaeI CTAG 3 cut(s) 153, 749, 1512
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 7 cut(s) 218, 490, 581, 601, 641, 811, 1046
MalI GATC 6 cut(s) 368, 995, 1092, 1176, 1542, 1803
MboI GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
MboII GAAGA 8 cut(s) 53, 470, 692, 763, 1284, 1427, 1498, 1512
MfeI CAATTG 1 cut(s) 662
MflI RGATCY 1 cut(s) 1801
MhlI GDGCHC 3 cut(s) 107, 210, 594
MluCI AATT 8 cut(s) 94, 317, 470, 662, 1443, 1665, 1766, 1773
MmeI TCCRAC 1 cut(s) 1407
Mph1103I ATGCAT 1 cut(s) 1756
MroXI GAANNNNTTC 7 cut(s) 242, 255, 376, 770, 914, 1203, 1218
MseI TTAA 4 cut(s) 1119, 1164, 1566, 1823
MslI CAYNNNNRTG 1 cut(s) 1352
MspR9I CCNGG 1 cut(s) 1187
MunI CAATTG 1 cut(s) 662
MvaI CCWGG 1 cut(s) 1187
MwoI GCNNNNNNNGC 7 cut(s) 36, 39, 111, 262, 271, 548, 1110
NdeII GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
NlaIII CATG 6 cut(s) 103, 233, 637, 679, 1117, 1836
NmuCI GTSAC 3 cut(s) 490, 581, 641
NsiI ATGCAT 1 cut(s) 1756
NspI RCATGY 1 cut(s) 233
PagI TCATGA 1 cut(s) 1832
PceI AGGCCT 2 cut(s) 1109, 1587
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdmI GAANNNNTTC 7 cut(s) 242, 255, 376, 770, 914, 1203, 1218
PfeI GAWTC 5 cut(s) 4, 372, 427, 829, 1490
PkrI GCNGC 7 cut(s) 32, 35, 38, 41, 550, 573, 655
PshBI ATTAAT 1 cut(s) 1566
Psp6I CCWGG 1 cut(s) 1185
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 1185
PspPI GGNCC 1 cut(s) 304
PstI CTGCAG 3 cut(s) 576, 655, 1750
PsuI RGATCY 1 cut(s) 1801
RsaI GTAC 1 cut(s) 1654
RsaNI GTAC 1 cut(s) 1653
RseI CAYNNNNRTG 1 cut(s) 1352
SaqAI TTAA 4 cut(s) 1119, 1164, 1566, 1823
SatI GCNGC 7 cut(s) 31, 34, 37, 40, 549, 572, 654
Sau3AI GATC 6 cut(s) 366, 993, 1090, 1174, 1540, 1801
Sau96I GGNCC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 1187
SduI GDGCHC 3 cut(s) 107, 210, 594
SexAI ACCWGGT 1 cut(s) 1185
SfaNI GCATC 4 cut(s) 748, 1296, 1741, 1763
SfcI CTRYAG 4 cut(s) 572, 651, 712, 1746
SmiMI CAYNNNNRTG 1 cut(s) 1352
SmlI CTYRAG 2 cut(s) 333, 527
SmoI CTYRAG 2 cut(s) 333, 527
Sse9I AATT 8 cut(s) 94, 317, 470, 662, 1443, 1665, 1766, 1773
SseBI AGGCCT 2 cut(s) 1109, 1587
SsiI CCGC 1 cut(s) 1057
SspMI CTAG 3 cut(s) 153, 749, 1512
StuI AGGCCT 2 cut(s) 1109, 1587
StyD4I CCNGG 1 cut(s) 1185
TaaI ACNGT 9 cut(s) 413, 587, 731, 1046, 1052, 1157, 1256, 1558, 1575
TaiI ACGT 1 cut(s) 810
TaqI TCGA 3 cut(s) 166, 246, 278
TasI AATT 8 cut(s) 94, 317, 470, 662, 1443, 1665, 1766, 1773
TfiI GAWTC 5 cut(s) 4, 372, 427, 829, 1490
Tru1I TTAA 4 cut(s) 1119, 1164, 1566, 1823
Tru9I TTAA 4 cut(s) 1119, 1164, 1566, 1823
TscAI CASTG 5 cut(s) 590, 655, 768, 860, 1398
TseFI GTSAC 3 cut(s) 490, 581, 641
TseI GCWGC 7 cut(s) 30, 33, 36, 39, 548, 571, 653
Tsp45I GTSAC 3 cut(s) 490, 581, 641
TspDTI ATGAA 7 cut(s) 76, 113, 264, 897, 1086, 1196, 1370
TspGWI ACGGA 2 cut(s) 275, 1778
TspRI CASTG 5 cut(s) 590, 655, 768, 860, 1398
VspI ATTAAT 1 cut(s) 1566
XbaI TCTAGA 1 cut(s) 152
XceI RCATGY 1 cut(s) 233
XmnI GAANNNNTTC 7 cut(s) 242, 255, 376, 770, 914, 1203, 1218
XspI CTAG 3 cut(s) 153, 749, 1512
Zsp2I ATGCAT 1 cut(s) 1756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.