(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 29 - 201 | 7.6e-61 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 258 - 498 | 3e-95 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 299 - 498 | 4.7e-61 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1038 |
| AccB1I | GGYRCC | 1 cut(s) | 1433 |
| AccI | GTMKAC | 1 cut(s) | 1581 |
| AciI | CCGC | 3 cut(s) | 977, 1334, 1337 |
| AclWI | GGATC | 1 cut(s) | 1001 |
| AcoI | YGGCCR | 1 cut(s) | 1302 |
| AcsI | RAATTY | 4 cut(s) | 279, 291, 425, 1104 |
| AcuI | CTGAAG | 2 cut(s) | 993, 1646 |
| AfaI | GTAC | 2 cut(s) | 854, 1606 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 489, 742, 879, 1296, 1351 |
| AflIII | ACRYGT | 1 cut(s) | 1393 |
| AjiI | CACGTC | 1 cut(s) | 784 |
| AjnI | CCWGG | 2 cut(s) | 720, 1209 |
| AluBI | AGCT | 9 cut(s) | 68, 468, 593, 641, 818, 964, 1124, 1135, 1160 |
| AluI | AGCT | 9 cut(s) | 68, 468, 593, 641, 818, 964, 1124, 1135, 1160 |
| Alw26I | GTCTC | 3 cut(s) | 9, 680, 804 |
| AlwI | GGATC | 1 cut(s) | 1001 |
| AoxI | GGCC | 4 cut(s) | 1206, 1302, 1366, 1532 |
| ApeKI | GCWGC | 3 cut(s) | 607, 902, 1331 |
| ApoI | RAATTY | 4 cut(s) | 279, 291, 425, 1104 |
| AseI | ATTAAT | 1 cut(s) | 1217 |
| AspS9I | GGNCC | 3 cut(s) | 187, 1207, 1366 |
| AsuHPI | GGTGA | 3 cut(s) | 181, 287, 523 |
| AsuII | TTCGAA | 3 cut(s) | 616, 858, 951 |
| AvaII | GGWCC | 1 cut(s) | 187 |
| BalI | TGGCCA | 1 cut(s) | 1304 |
| BanI | GGYRCC | 1 cut(s) | 1433 |
| BbsI | GAAGAC | 1 cut(s) | 510 |
| BbvI | GCAGC | 3 cut(s) | 619, 889, 1318 |
| BccI | CCATC | 4 cut(s) | 269, 492, 744, 1589 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 596, 630 |
| BciT130I | CCWGG | 2 cut(s) | 722, 1211 |
| BciVI | GTATCC | 1 cut(s) | 486 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcoDI | GTCTC | 3 cut(s) | 9, 680, 804 |
| BfaI | CTAG | 6 cut(s) | 242, 524, 642, 879, 1136, 1314 |
| BfuI | GTATCC | 1 cut(s) | 486 |
| BisI | GCNGC | 4 cut(s) | 608, 903, 1332, 1335 |
| BlsI | GCNGC | 4 cut(s) | 609, 904, 1333, 1336 |
| BmcAI | AGTACT | 1 cut(s) | 1606 |
| Bme1390I | CCNGG | 2 cut(s) | 722, 1211 |
| Bme18I | GGWCC | 1 cut(s) | 187 |
| BmgBI | CACGTC | 1 cut(s) | 784 |
| BmgT120I | GGNCC | 3 cut(s) | 187, 1207, 1366 |
| BmiI | GGNNCC | 2 cut(s) | 189, 1435 |
| BmrFI | CCNGG | 2 cut(s) | 722, 1211 |
| BmsI | GCATC | 5 cut(s) | 26, 168, 443, 633, 925 |
| BpiI | GAAGAC | 1 cut(s) | 510 |
| BpmI | CTGGAG | 1 cut(s) | 980 |
| Bpu14I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BpuEI | CTTGAG | 2 cut(s) | 158, 566 |
| BsaJI | CCNNGG | 2 cut(s) | 1209, 1529 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 489, 742, 879, 1296, 1351 |
| Bse1I | ACTGG | 1 cut(s) | 963 |
| BseBI | CCWGG | 2 cut(s) | 722, 1211 |
| BseDI | CCNNGG | 2 cut(s) | 1209, 1529 |
| BseGI | GGATG | 7 cut(s) | 183, 890, 997, 1201, 1360, 1381, 1579 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 489, 742, 879, 1296, 1351 |
| BseMII | CTCAG | 2 cut(s) | 434, 878 |
| BseNI | ACTGG | 1 cut(s) | 963 |
| BseXI | GCAGC | 3 cut(s) | 619, 889, 1318 |
| BseYI | CCCAGC | 1 cut(s) | 837 |
| BshFI | GGCC | 4 cut(s) | 1208, 1304, 1368, 1534 |
| BshNI | GGYRCC | 1 cut(s) | 1433 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 489, 742, 879, 1296, 1351 |
| BsmAI | GTCTC | 3 cut(s) | 9, 680, 804 |
| BsnI | GGCC | 4 cut(s) | 1208, 1304, 1368, 1534 |
| Bsp119I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| Bsp143I | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| BspACI | CCGC | 3 cut(s) | 977, 1334, 1337 |
| BspANI | GGCC | 4 cut(s) | 1208, 1304, 1368, 1534 |
| BspCNI | CTCAG | 2 cut(s) | 435, 877 |
| BspHI | TCATGA | 2 cut(s) | 664, 1609 |
| BspLI | GGNNCC | 2 cut(s) | 189, 1435 |
| BspPI | GGATC | 1 cut(s) | 1001 |
| BspT104I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BspT107I | GGYRCC | 1 cut(s) | 1433 |
| BsrI | ACTGG | 1 cut(s) | 963 |
| BssECI | CCNNGG | 2 cut(s) | 1209, 1529 |
| BssMI | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| BssNAI | GTATAC | 1 cut(s) | 1582 |
| BssT1I | CCWWGG | 1 cut(s) | 1529 |
| Bst1107I | GTATAC | 1 cut(s) | 1582 |
| Bst2UI | CCWGG | 2 cut(s) | 722, 1211 |
| Bst4CI | ACNGT | 5 cut(s) | 43, 563, 1192, 1604, 1621 |
| Bst6I | CTCTTC | 3 cut(s) | 159, 167, 510 |
| BstBI | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BstDEI | CTNAG | 4 cut(s) | 359, 443, 488, 864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 877 |
| BstF5I | GGATG | 7 cut(s) | 183, 890, 997, 1201, 1360, 1381, 1579 |
| BstKTI | GATC | 4 cut(s) | 97, 328, 421, 1009 |
| BstMAI | GTCTC | 3 cut(s) | 9, 680, 804 |
| BstMBI | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1121, 1660 |
| BstNI | CCWGG | 2 cut(s) | 722, 1211 |
| BstNSI | RCATGY | 3 cut(s) | 121, 1397, 1566 |
| BstSCI | CCNGG | 2 cut(s) | 720, 1209 |
| BstV1I | GCAGC | 3 cut(s) | 619, 889, 1318 |
| BstV2I | GAAGAC | 1 cut(s) | 510 |
| BstX2I | RGATCY | 1 cut(s) | 1006 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 87 |
| BstYI | RGATCY | 1 cut(s) | 1006 |
| BstZ17I | GTATAC | 1 cut(s) | 1582 |
| BsuI | GTATCC | 1 cut(s) | 486 |
| BsuRI | GGCC | 4 cut(s) | 1208, 1304, 1368, 1534 |
| BtgZI | GCGATG | 1 cut(s) | 402 |
| BtrI | CACGTC | 1 cut(s) | 784 |
| BtsCI | GGATG | 7 cut(s) | 183, 890, 997, 1201, 1360, 1381, 1579 |
| BtsIMutI | CAGTG | 2 cut(s) | 855, 1197 |
| CciI | TCATGA | 2 cut(s) | 664, 1609 |
| Cfr13I | GGNCC | 3 cut(s) | 187, 1207, 1366 |
| CseI | GACGC | 1 cut(s) | 1490 |
| CsiI | ACCWGGT | 1 cut(s) | 720 |
| Csp6I | GTAC | 2 cut(s) | 853, 1605 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 526, 561 |
| CviQI | GTAC | 2 cut(s) | 853, 1605 |
| DdeI | CTNAG | 4 cut(s) | 359, 443, 488, 864 |
| DpnI | GATC | 4 cut(s) | 96, 327, 420, 1008 |
| DpnII | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| EaeI | YGGCCR | 1 cut(s) | 1302 |
| Eam1104I | CTCTTC | 3 cut(s) | 159, 167, 510 |
| EarI | CTCTTC | 3 cut(s) | 159, 167, 510 |
| Eco130I | CCWWGG | 1 cut(s) | 1529 |
| Eco47I | GGWCC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 2 cut(s) | 993, 1646 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 877 |
| EcoRI | GAATTC | 1 cut(s) | 1104 |
| EcoRII | CCWGG | 2 cut(s) | 720, 1209 |
| EcoT14I | CCWWGG | 1 cut(s) | 1529 |
| ErhI | CCWWGG | 1 cut(s) | 1529 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 312, 344, 1062, 1094 |
| FauNDI | CATATG | 1 cut(s) | 1203 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| FblI | GTMKAC | 1 cut(s) | 1581 |
| Fnu4HI | GCNGC | 4 cut(s) | 608, 903, 1332, 1335 |
| FokI | GGATG | 7 cut(s) | 190, 877, 1004, 1208, 1367, 1388, 1586 |
| Fsp4HI | GCNGC | 4 cut(s) | 608, 903, 1332, 1335 |
| FspBI | CTAG | 6 cut(s) | 242, 524, 642, 879, 1136, 1314 |
| GluI | GCNGC | 4 cut(s) | 608, 903, 1332, 1335 |
| GsaI | CCCAGC | 1 cut(s) | 841 |
| GsuI | CTGGAG | 1 cut(s) | 980 |
| HaeIII | GGCC | 4 cut(s) | 1208, 1304, 1368, 1534 |
| HgaI | GACGC | 1 cut(s) | 1490 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 1 cut(s) | 466 |
| HinfI | GANTC | 6 cut(s) | 548, 674, 688, 1286, 1347, 1502 |
| HphI | GGTGA | 3 cut(s) | 181, 287, 523 |
| Hpy166II | GTNNAC | 3 cut(s) | 127, 853, 1582 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 423, 444 |
| Hpy188III | TCNNGA | 6 cut(s) | 27, 456, 545, 665, 694, 1610 |
| Hpy8I | GTNNAC | 3 cut(s) | 127, 853, 1582 |
| HpyCH4III | ACNGT | 5 cut(s) | 43, 563, 1192, 1604, 1621 |
| HpyCH4IV | ACGT | 2 cut(s) | 238, 783 |
| HpyCH4V | TGCA | 6 cut(s) | 121, 607, 704, 727, 1171, 1562 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1121, 1660 |
| HpyF3I | CTNAG | 4 cut(s) | 359, 443, 488, 864 |
| HpySE526I | ACGT | 2 cut(s) | 238, 783 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| LmnI | GCTCC | 1 cut(s) | 961 |
| Lsp1109I | GCAGC | 3 cut(s) | 619, 889, 1318 |
| LweI | GCATC | 5 cut(s) | 26, 168, 443, 633, 925 |
| MabI | ACCWGGT | 1 cut(s) | 720 |
| MaeI | CTAG | 6 cut(s) | 242, 524, 642, 879, 1136, 1314 |
| MaeII | ACGT | 2 cut(s) | 238, 783 |
| MaeIII | GTNAC | 5 cut(s) | 371, 827, 1145, 1478, 1598 |
| MalI | GATC | 4 cut(s) | 96, 327, 420, 1008 |
| MboI | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| MboII | GAAGA | 9 cut(s) | 176, 184, 332, 515, 527, 965, 1082, 1454, 1457 |
| MfeI | CAATTG | 2 cut(s) | 212, 1460 |
| MflI | RGATCY | 1 cut(s) | 1006 |
| MlsI | TGGCCA | 1 cut(s) | 1304 |
| MluNI | TGGCCA | 1 cut(s) | 1304 |
| MlyI | GAGTC | 2 cut(s) | 557, 682 |
| MmeI | TCCRAC | 1 cut(s) | 690 |
| MnlI | CCTC | 5 cut(s) | 160, 168, 511, 873, 978 |
| Mox20I | TGGCCA | 1 cut(s) | 1304 |
| MscI | TGGCCA | 1 cut(s) | 1304 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1374 |
| Msp20I | TGGCCA | 1 cut(s) | 1304 |
| MspR9I | CCNGG | 2 cut(s) | 722, 1211 |
| MunI | CAATTG | 2 cut(s) | 212, 1460 |
| MvaI | CCWGG | 2 cut(s) | 722, 1211 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1121, 1660 |
| NdeI | CATATG | 1 cut(s) | 1203 |
| NdeII | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| NlaIV | GGNNCC | 2 cut(s) | 189, 1435 |
| NmuCI | GTSAC | 1 cut(s) | 1478 |
| NspI | RCATGY | 3 cut(s) | 121, 1397, 1566 |
| NspV | TTCGAA | 3 cut(s) | 616, 858, 951 |
| PagI | TCATGA | 2 cut(s) | 664, 1609 |
| PciI | ACATGT | 1 cut(s) | 1393 |
| PfeI | GAWTC | 4 cut(s) | 674, 1286, 1347, 1502 |
| PkrI | GCNGC | 4 cut(s) | 609, 904, 1333, 1336 |
| PleI | GAGTC | 2 cut(s) | 556, 682 |
| PpsI | GAGTC | 2 cut(s) | 556, 682 |
| PscI | ACATGT | 1 cut(s) | 1393 |
| PshBI | ATTAAT | 1 cut(s) | 1217 |
| PsiI | TTATAA | 1 cut(s) | 1038 |
| Psp6I | CCWGG | 2 cut(s) | 720, 1209 |
| PspFI | CCCAGC | 1 cut(s) | 837 |
| PspGI | CCWGG | 2 cut(s) | 720, 1209 |
| PspN4I | GGNNCC | 2 cut(s) | 189, 1435 |
| PspPI | GGNCC | 3 cut(s) | 187, 1207, 1366 |
| PsuI | RGATCY | 1 cut(s) | 1006 |
| RsaI | GTAC | 2 cut(s) | 854, 1606 |
| RsaNI | GTAC | 2 cut(s) | 853, 1605 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1374 |
| SatI | GCNGC | 4 cut(s) | 608, 903, 1332, 1335 |
| Sau3AI | GATC | 4 cut(s) | 94, 325, 418, 1006 |
| Sau96I | GGNCC | 3 cut(s) | 187, 1207, 1366 |
| ScaI | AGTACT | 1 cut(s) | 1606 |
| SchI | GAGTC | 2 cut(s) | 557, 682 |
| ScrFI | CCNGG | 2 cut(s) | 722, 1211 |
| SexAI | ACCWGGT | 1 cut(s) | 720 |
| SfaNI | GCATC | 5 cut(s) | 26, 168, 443, 633, 925 |
| SfuI | TTCGAA | 3 cut(s) | 616, 858, 951 |
| SinI | GGWCC | 1 cut(s) | 187 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1374 |
| SmlI | CTYRAG | 2 cut(s) | 137, 545 |
| SmoI | CTYRAG | 2 cut(s) | 137, 545 |
| SsiI | CCGC | 3 cut(s) | 977, 1334, 1337 |
| SspMI | CTAG | 6 cut(s) | 242, 524, 642, 879, 1136, 1314 |
| StyD4I | CCNGG | 2 cut(s) | 720, 1209 |
| StyI | CCWWGG | 1 cut(s) | 1529 |
| TaaI | ACNGT | 5 cut(s) | 43, 563, 1192, 1604, 1621 |
| TaiI | ACGT | 2 cut(s) | 241, 786 |
| TaqI | TCGA | 8 cut(s) | 28, 513, 616, 858, 951, 1102, 1293, 1546 |
| TatI | WGTACW | 2 cut(s) | 852, 1604 |
| TauI | GCSGC | 1 cut(s) | 1337 |
| TfiI | GAWTC | 4 cut(s) | 674, 1286, 1347, 1502 |
| TscAI | CASTG | 2 cut(s) | 855, 1197 |
| TseFI | GTSAC | 1 cut(s) | 1478 |
| TseI | GCWGC | 3 cut(s) | 607, 902, 1331 |
| Tsp45I | GTSAC | 1 cut(s) | 1478 |
| TspDTI | ATGAA | 7 cut(s) | 489, 681, 1040, 1142, 1212, 1436, 1515 |
| TspGWI | ACGGA | 2 cut(s) | 335, 513 |
| TspRI | CASTG | 2 cut(s) | 855, 1197 |
| VpaK11BI | GGWCC | 1 cut(s) | 187 |
| VspI | ATTAAT | 1 cut(s) | 1217 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 877 |
| XapI | RAATTY | 4 cut(s) | 279, 291, 425, 1104 |
| XceI | RCATGY | 3 cut(s) | 121, 1397, 1566 |
| XmiI | GTMKAC | 1 cut(s) | 1581 |
| XspI | CTAG | 6 cut(s) | 242, 524, 642, 879, 1136, 1314 |
| ZrmI | AGTACT | 1 cut(s) | 1606 |