Rh5CG294000

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000053
Physical Location & Seq
Reverse (-)
32401500 .. 32403875
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG294000.1

Sequence Viewer

Length: 1644 bp
ATGTCTCTCAACGTGGTCAGTGTAGCTTCTCAAGCCCCTCCTACCCTGAATGCCTCTACTGATGCCGATAGTCGACGTTCGGCTAATTTCCATCCCAGCATTTGGGGAGATCAGTTTCTGTCTTATAACAACACTATGGAAACTAACATAAATGGTGAGCAACATGTCCAACAACTGAAGGAAGAAGTGAAGAGAATGCTAATGGCTCCGCCAGTTCAAACAAGTTTGGGAAAACTGGAGTTGATTGATGACATTCAACGCTTGGGTGTGTCTTACCATTTTGAATACGAAATTGACCAAACTATGCAACAAATTCACCACAATTTTAATGGTTACTGTGATGATGATCTGGACACTTGTGCTCTTCGTTTTCGCTTGCTGAGGCAGCATGGTTACAATGTTTCATGCGATACGTTCAACAAGTTCAAGGACAGTGATGGAAAATTGAACAAATCGCTTCACGATGATGTAGTGGGACTACAAAGCTTGTATGAAGCCACACATCTTAGAGTACGAGGAGAGGATTTTCTAGAAGAAGCACTAACCTTCACCACCACACATCTAGCGTCGGCAGTGCTAGCAAACCGTTTAAGCCCCCCACTTTCGAAACAAGTAAGGCATGCCTTGAATCAACCACTCCGGAAGGGCTTACCGAGGCTAGAAGCGAGGCACTACATGTCTCTCCACCAGGAACTACACGGATCACGTAACCAAATTTTGCTGAGTTTTGCAAAGCTGGATTTCAACCTGCTCCAACAATTGCACCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGAGTTGGACTTTGCTAGCAAGCTACCTTTTGCAAGAGACAGAGAGGACACTAACCAAAGTTATTGCCATGACATCCAATCATCCATTATCGATGACATTTATGATGTGTATGGCACGCTTGAAGAACTAGACCTCTTTACTAGAGCAATTGAGAGGTGGAACATCTCCGCCATGGATGAACTACCGGAGTATATGAAAGTCTGTTACGAGGCACTGTTAGATGTCTATGCTGATACAGAACAACAGCTTGCAAGCGAGGGAAGATTATATCGTATCGATTACGCAAAAGAAGCGATGAAGAGACAAGTTAGGGCATACCATGCTGAAGCAAAATGGTTACACAAGAACTACACACCAACAATGGATGAATACATGGAAGTAGCCCTTGTCACTTCAGCCTACTCAATGCTAGCAACCACATCCTTTGTTGGAATGGGAGACATCGTTACAAAAGACTCCTTTGAGTGGATCTTCAGTGACCCTAAGATTGTAAAGGCTTCATCAGTAGTTTGCAGACTCATGGATGACATTGTATCCCACAAGTTTGAGCAAAAGAGAGGACATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCGACAGAAGAACAAACCATAATTGAATTTGGTAAACAAGTGAGTGATGCATGGAAGGACATAAATGAAGAGTGCCTCCACCCTACACCTCTTGAAATGCCGCTCTTAATGCGAGTTCTGAATCTCACACGCGTGATAGATGTAGTATACAAGTCTGAAGATGGCTACACTCATGCTGGAACCATTCTCAAAGATTTTGTAGCTTCTCTACTTATCGAACCTGTGCCTGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

547

Amino Acids

62.86

Weight (kDa)

5.32

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 34 - 209 8.7e-59 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 295 - 488 6.3e-81 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 295 - 488 3.1e-61 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 756
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 1507
AccI GTMKAC 2 cut(s) 73, 1551
AccII CGCG 1 cut(s) 1536
AccIII TCCGGA 1 cut(s) 639
AciI CCGC 3 cut(s) 209, 969, 1505
AclWI GGATC 2 cut(s) 709, 1277
AcsI RAATTY 3 cut(s) 312, 714, 1430
AcuI CTGAAG 5 cut(s) 197, 1146, 1179, 1258, 1581
AfaI GTAC 1 cut(s) 513
AfiI CCNNNNNNNGG 2 cut(s) 102, 1266
AflIII ACRYGT 4 cut(s) 163, 675, 1363, 1534
AjnI CCWGG 1 cut(s) 687
AleI CACNNNNGTG 1 cut(s) 1535
AluBI AGCT 6 cut(s) 26, 486, 736, 823, 1048, 1607
AluI AGCT 6 cut(s) 26, 486, 736, 823, 1048, 1607
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 5 cut(s) 9, 684, 831, 1096, 1233
AlwI GGATC 2 cut(s) 709, 1277
AlwNI CAGNNNCTG 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 3 cut(s) 312, 714, 1430
AsuHPI GGTGA 3 cut(s) 167, 308, 541
AsuII TTCGAA 1 cut(s) 605
AsuNHI GCTAGC 3 cut(s) 577, 815, 1210
Bbv12I GWGCWC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 99, 431, 1559
BciT130I CCWGG 1 cut(s) 689
BciVI GTATCC 1 cut(s) 1345
BcoDI GTCTC 5 cut(s) 9, 684, 831, 1096, 1233
BfaI CTAG 8 cut(s) 530, 563, 578, 659, 816, 929, 942, 1211
BfuAI ACCTGC 1 cut(s) 756
BfuI GTATCC 1 cut(s) 1345
BisI GCNGC 2 cut(s) 386, 1505
BlsI GCNGC 2 cut(s) 387, 1506
Bme1390I CCNGG 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 207, 1585
BmrFI CCNGG 1 cut(s) 689
BmsI GCATC 2 cut(s) 52, 1441
BmtI GCTAGC 3 cut(s) 581, 819, 1214
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 2 cut(s) 891, 1077
BsaAI YACGTR 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 653, 972, 1371
BsaWI WCCGGW 2 cut(s) 639, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1266
Bse1I ACTGG 2 cut(s) 212, 240
Bse8I GATNNNNATC 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 639
BseBI CCWGG 1 cut(s) 689
BseCI ATCGAT 2 cut(s) 891, 1077
BseDI CCNNGG 3 cut(s) 653, 972, 1371
BseGI GGATG 7 cut(s) 91, 873, 881, 982, 1171, 1220, 1330
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 102, 1266
BseMII CTCAG 2 cut(s) 371, 713
BseNI ACTGG 2 cut(s) 212, 240
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 1536
BshVI ATCGAT 2 cut(s) 891, 1077
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 640, 986
BslFI GGGAC 1 cut(s) 489
BslI CCNNNNNNNGG 2 cut(s) 102, 1266
BsmAI GTCTC 5 cut(s) 9, 684, 831, 1096, 1233
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 2 cut(s) 55, 201
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 639
Bsp143I GATC 4 cut(s) 109, 346, 701, 1269
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 3 cut(s) 209, 969, 1505
BspCNI CTCAG 2 cut(s) 372, 714
BspDI ATCGAT 2 cut(s) 891, 1077
BspEI TCCGGA 1 cut(s) 639
BspFNI CGCG 1 cut(s) 1536
BspLI GGNNCC 2 cut(s) 207, 1585
BspMI ACCTGC 1 cut(s) 756
BspOI GCTAGC 3 cut(s) 581, 819, 1214
BspPI GGATC 2 cut(s) 709, 1277
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 1507
BsrI ACTGG 2 cut(s) 212, 240
BssECI CCNNGG 3 cut(s) 653, 972, 1371
BssMI GATC 4 cut(s) 109, 346, 701, 1269
BssNAI GTATAC 1 cut(s) 1552
BssT1I CCWWGG 1 cut(s) 972
Bst1107I GTATAC 1 cut(s) 1552
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 5 cut(s) 338, 434, 587, 1017, 1403
Bst6I CTCTTC 4 cut(s) 185, 369, 1094, 1467
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstBAI YACGTR 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 9 cut(s) 377, 579, 621, 817, 821, 917, 1050, 1054, 1212
BstDEI CTNAG 5 cut(s) 380, 506, 722, 776, 1284
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 7 cut(s) 91, 873, 881, 982, 1171, 1220, 1330
BstFNI CGCG 1 cut(s) 1536
BstKTI GATC 4 cut(s) 112, 349, 704, 1272
BstMAI GTCTC 5 cut(s) 9, 684, 831, 1096, 1233
BstMBI GATC 4 cut(s) 109, 346, 701, 1269
BstMWI GCNNNNNNNGC 6 cut(s) 32, 385, 578, 1091, 1121, 1513
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 4 cut(s) 167, 623, 679, 1367
BstSCI CCNGG 1 cut(s) 687
BstUI CGCG 1 cut(s) 1536
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 1269
BstYI RGATCY 1 cut(s) 1269
BstZ17I GTATAC 1 cut(s) 1552
Bsu15I ATCGAT 2 cut(s) 891, 1077
BsuI GTATCC 1 cut(s) 1345
BsuTUI ATCGAT 2 cut(s) 891, 1077
BtgI CCRYGG 1 cut(s) 972
BtgZI GCGATG 1 cut(s) 1109
BtsCI GGATG 7 cut(s) 91, 873, 881, 982, 1171, 1220, 1330
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 5 cut(s) 25, 439, 579, 1013, 1282
BveI ACCTGC 1 cut(s) 756
Cac8I GCNNGC 9 cut(s) 377, 579, 621, 817, 821, 917, 1050, 1054, 1212
CaiI CAGNNNCTG 1 cut(s) 118
ClaI ATCGAT 2 cut(s) 891, 1077
CseI GACGC 1 cut(s) 555
Csp6I GTAC 1 cut(s) 512
CspCI CAANNNNNGTGG 2 cut(s) 1207, 1242
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 5 cut(s) 380, 506, 722, 776, 1284
DpnI GATC 4 cut(s) 111, 348, 703, 1271
DpnII GATC 4 cut(s) 109, 346, 701, 1269
Eam1104I CTCTTC 4 cut(s) 185, 369, 1094, 1467
EarI CTCTTC 4 cut(s) 185, 369, 1094, 1467
EciI GGCGGA 2 cut(s) 198, 958
Eco130I CCWWGG 1 cut(s) 972
Eco57I CTGAAG 5 cut(s) 197, 1146, 1179, 1258, 1581
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 1 cut(s) 1456
ErhI CCWWGG 1 cut(s) 972
FalI AAGNNNNNCTT 2 cut(s) 1170, 1202
FaqI GGGAC 1 cut(s) 489
FblI GTMKAC 2 cut(s) 73, 1551
Fnu4HI GCNGC 2 cut(s) 386, 1505
FokI GGATG 7 cut(s) 78, 860, 868, 989, 1178, 1207, 1337
Fsp4HI GCNGC 2 cut(s) 386, 1505
FspBI CTAG 8 cut(s) 530, 563, 578, 659, 816, 929, 942, 1211
GluI GCNGC 2 cut(s) 386, 1505
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 2 cut(s) 640, 986
HgaI GACGC 1 cut(s) 555
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 628, 1256, 1317, 1525
HpaII CCGG 2 cut(s) 640, 986
HphI GGTGA 3 cut(s) 167, 308, 541
Hpy166II GTNNAC 3 cut(s) 74, 1439, 1552
Hpy188I TCNGA 2 cut(s) 1524, 1561
Hpy188III TCNNGA 5 cut(s) 350, 461, 530, 640, 1496
Hpy8I GTNNAC 3 cut(s) 74, 1439, 1552
Hpy99I CGWCG 2 cut(s) 78, 571
HpyAV CCTTC 5 cut(s) 172, 556, 637, 793, 1453
HpyCH4III ACNGT 5 cut(s) 338, 434, 587, 1017, 1403
HpyCH4IV ACGT 4 cut(s) 12, 76, 413, 706
HpyCH4V TGCA 8 cut(s) 307, 731, 763, 788, 833, 1052, 1314, 1454
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 385, 578, 1091, 1121, 1513
HpyF3I CTNAG 5 cut(s) 380, 506, 722, 776, 1284
HpySE526I ACGT 4 cut(s) 12, 76, 413, 706
Kpn2I TCCGGA 1 cut(s) 639
Kzo9I GATC 4 cut(s) 109, 346, 701, 1269
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 211, 756
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 52, 1441
MaeI CTAG 8 cut(s) 530, 563, 578, 659, 816, 929, 942, 1211
MaeII ACGT 4 cut(s) 12, 76, 413, 706
MaeIII GTNAC 9 cut(s) 332, 392, 707, 1004, 1137, 1189, 1246, 1277, 1385
MalI GATC 4 cut(s) 111, 348, 703, 1271
MbiI CCGCTC 1 cut(s) 1507
MboI GATC 4 cut(s) 109, 346, 701, 1269
MfeI CAATTG 2 cut(s) 758, 948
MflI RGATCY 1 cut(s) 1269
MhlI GDGCHC 1 cut(s) 364
MluI ACGCGT 1 cut(s) 1534
MlyI GAGTC 2 cut(s) 1250, 1311
MmeI TCCRAC 4 cut(s) 193, 778, 786, 1210
Mph1103I ATGCAT 1 cut(s) 1456
MroI TCCGGA 1 cut(s) 639
MseI TTAA 3 cut(s) 327, 590, 1511
MslI CAYNNNNRTG 2 cut(s) 465, 1535
MspI CCGG 2 cut(s) 640, 986
MspR9I CCNGG 1 cut(s) 689
MunI CAATTG 2 cut(s) 758, 948
Mva1269I GAATGC 2 cut(s) 55, 201
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 1 cut(s) 1536
MwoI GCNNNNNNNGC 6 cut(s) 32, 385, 578, 1091, 1121, 1513
NcoI CCATGG 1 cut(s) 972
NdeII GATC 4 cut(s) 109, 346, 701, 1269
NheI GCTAGC 3 cut(s) 577, 815, 1210
NlaIV GGNNCC 2 cut(s) 207, 1585
NmeAIII GCCGAG 1 cut(s) 1352
NmuCI GTSAC 2 cut(s) 1189, 1277
NsiI ATGCAT 1 cut(s) 1456
NspI RCATGY 4 cut(s) 167, 623, 679, 1367
NspV TTCGAA 1 cut(s) 605
OliI CACNNNNGTG 1 cut(s) 1535
PaeI GCATGC 1 cut(s) 623
PciI ACATGT 3 cut(s) 163, 675, 1363
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 2 cut(s) 55, 201
PfeI GAWTC 2 cut(s) 628, 1525
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 387, 1506
PleI GAGTC 2 cut(s) 1250, 1311
PpsI GAGTC 2 cut(s) 1250, 1311
Ppu21I YACGTR 1 cut(s) 707
PscI ACATGT 3 cut(s) 163, 675, 1363
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 207, 1585
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 1269
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
RseI CAYNNNNRTG 2 cut(s) 465, 1535
SalI GTCGAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 327, 590, 1511
SatI GCNGC 2 cut(s) 386, 1505
Sau3AI GATC 4 cut(s) 109, 346, 701, 1269
SchI GAGTC 2 cut(s) 1250, 1311
ScrFI CCNGG 1 cut(s) 689
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 2 cut(s) 52, 1441
SfuI TTCGAA 1 cut(s) 605
SmiMI CAYNNNNRTG 2 cut(s) 465, 1535
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SphI GCATGC 1 cut(s) 623
SsiI CCGC 3 cut(s) 209, 969, 1505
SspMI CTAG 8 cut(s) 530, 563, 578, 659, 816, 929, 942, 1211
StyD4I CCNGG 1 cut(s) 687
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 5 cut(s) 338, 434, 587, 1017, 1403
TaiI ACGT 4 cut(s) 15, 79, 416, 709
TaqI TCGA 5 cut(s) 73, 605, 891, 1077, 1620
TauI GCSGC 1 cut(s) 1507
TfiI GAWTC 2 cut(s) 628, 1525
Tru1I TTAA 3 cut(s) 327, 590, 1511
Tru9I TTAA 3 cut(s) 327, 590, 1511
TscAI CASTG 5 cut(s) 25, 439, 579, 1020, 1282
TseFI GTSAC 2 cut(s) 1189, 1277
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 2 cut(s) 1189, 1277
TspDTI ATGAA 9 cut(s) 393, 507, 993, 1010, 1112, 1182, 1290, 1406, 1485
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 5 cut(s) 25, 439, 579, 1020, 1282
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 3 cut(s) 312, 714, 1430
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 4 cut(s) 167, 623, 679, 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 73, 1551
XspI CTAG 8 cut(s) 530, 563, 578, 659, 816, 929, 942, 1211
Zsp2I ATGCAT 1 cut(s) 1456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.