Rmu_sc0004507.1_g000042

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004507.1
OG0000053
Physical Location & Seq
Reverse (-)
180874 .. 183258
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004507.1_g000042.1.cds

Sequence Viewer

Length: 1683 bp
atgtctatacaattagcttctctttcaatccaagcagcacaaactgctaagcctgaaatccttcggcgcacagcgaattatcacccatgcatttggggagatcagttcatcaactataattctcaggacactatgactcaggcccttcggcaagagcaggttgatcaactgaaagtagtagtgaggagggaagttttcagaaatacttcaggtgacttttcacatcaaatgaagttgatcgatgcgatgcagcgtcttggcgtggcataccatttcgaaacagaaatagaaaacacactcgagcatatgcagcatacatctgttcatgatgatgacttgtacaatgttgctcttggttttcggttattacgagaacatggatataatgtttcttctggtatattcaacaagttcaaagatgcaaatggtaacttcaaagaaggcttaacttcggatctgcccggtatgttaagcttttatgaagcaacgcatctaaggatgcatggtgaagatatactagaagatggactctttttcaccactgctcaccttgaattttctgcgaacgatgtaaatcatgcattagcagcccaaataactcaagccttagagagacctctacgaaaacatccagagagattatatgcgaggtcttacatgtcaatcttcccaaatgatcataaaactttgcatcatgaagcagtagctttattgaaacttgcaaagttagatttcaatcttgttcagtctttacacaaaaaagagctcagtgagatcactaggtggtggaaagaactaaactttgaaagggagttaccgttcgcaagaaataggattgtggagttgtacttttggatagtgggagtatttttcgaaccccaatactcgacggcaagacattttttaacaaaagggattgcaattatatcagttttggatgacatttacgatgcatatggtacattcgaagaactcaaaatatttactgaagcaattcaaaggtgggatgtcgactgtatagatgaactaccagactatatgaagatattttatcgtacactgttcatttttttcaatgaaattgaggtggcgatggtaacgcaaggaacatcataccgagtacactacgtaaaagaagtgataaaagctcaagcccgactatactttgccgaggcacaatggctccatgaaaactacatcccaagtatggatgagtatatgcaggtctctgtacgctctgttggaaacactttgctttcgactatatctctagttggcatgggagatattgtaaccaaacaggcatttgagtggctggcaaatgaccccaaaatccttagagcttcgaatatcatttttaggctcatggatgatctcgtttccagcaagtttgagaaagagagagaacacatttcttctagtattgattgctacatgaagcaacatggggtctcagagaaagaaacagttgttgtctttaacaaaaaagtagcagattcgtggaaggatataaacgaagagtttcttagaccaactgatgttccaatgcctgtgcttactcggattcttaacctaactagagtagttgatctcctttacaaaggggaggatgagtacacccgagtgggaaaagtgatgaaagatggtgttgcctcactgctaattgatccggtaccattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

560

Amino Acids

65.04

Weight (kDa)

5.69

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 148, 1213
Acc65I GGTACC 1 cut(s) 1672
AccB1I GGYRCC 1 cut(s) 1672
AccI GTMKAC 1 cut(s) 1011
AclWI GGATC 2 cut(s) 462, 1661
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 2 cut(s) 192, 1008
AdeI CACNNNGTG 1 cut(s) 783
AfaI GTAC 8 cut(s) 341, 848, 961, 1057, 1122, 1233, 1616, 1674
AfiI CCNNNNNNNGG 1 cut(s) 1207
AflIII ACRYGT 1 cut(s) 657
AleI CACNNNNGTG 1 cut(s) 1622
AloI GAACNNNNNNTCC 2 cut(s) 803, 835
AluBI AGCT 6 cut(s) 17, 474, 707, 766, 1148, 1343
AluI AGCT 6 cut(s) 17, 474, 707, 766, 1148, 1343
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 3 cut(s) 607, 1231, 1456
AlwI GGATC 2 cut(s) 462, 1661
Ama87I CYCGRG 2 cut(s) 299, 1620
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 4 cut(s) 35, 250, 310, 587
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 4 cut(s) 60, 205, 993, 1521
Asp718I GGTACC 1 cut(s) 1672
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 5 cut(s) 74, 224, 518, 529, 539
AsuII TTCGAA 4 cut(s) 276, 873, 966, 1346
AvaI CYCGRG 2 cut(s) 299, 1620
BaeI ACNNNNGTAYC 1 cut(s) 1664
BanI GGYRCC 1 cut(s) 1672
BanII GRGCYC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 4 cut(s) 47, 262, 322, 599
BccI CCATC 3 cut(s) 518, 1087, 1637
BceAI ACGGC 1 cut(s) 906
BclI TGATCA 2 cut(s) 163, 676
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 3 cut(s) 607, 1231, 1456
BfaI CTAG 5 cut(s) 518, 780, 1271, 1419, 1578
BfuAI ACCTGC 2 cut(s) 148, 1213
BisI GCNGC 4 cut(s) 36, 251, 311, 588
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 4 cut(s) 37, 252, 312, 589
Bme1390I CCNGG 1 cut(s) 462
BmeT110I CYCGRG 2 cut(s) 299, 1620
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 1184, 1674
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 7 cut(s) 232, 237, 409, 489, 499, 700, 940
Bpu1102I GCTNAGC 1 cut(s) 48
Bpu14I TTCGAA 4 cut(s) 276, 873, 966, 1346
BpuEI CTTGAG 2 cut(s) 585, 1134
BpuMI CCSGG 1 cut(s) 462
Bsa29I ATCGAT 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 1129
BsaBI GATNNNNATC 2 cut(s) 573, 735
BsaI GGTCTC 3 cut(s) 607, 1231, 1456
BsaJI CCNNGG 1 cut(s) 1170
BsaWI WCCGGW 1 cut(s) 1669
BsaXI ACNNNNNCTCC 8 cut(s) 803, 833, 1167, 1197, 1275, 1305, 1598, 1628
Bsc4I CCNNNNNNNGG 1 cut(s) 1207
Bse8I GATNNNNATC 2 cut(s) 573, 735
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 1170
BseGI GGATG 8 cut(s) 504, 628, 943, 1012, 1197, 1216, 1375, 1615
BseJI GATNNNNATC 2 cut(s) 573, 735
BseLI CCNNNNNNNGG 1 cut(s) 1207
BseMII CTCAG 4 cut(s) 137, 152, 781, 1467
BseRI GAGGAG 1 cut(s) 199
BseXI GCAGC 4 cut(s) 47, 262, 322, 599
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 1672
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 768
BsiHKCI CYCGRG 2 cut(s) 299, 1620
BsiSI CCGG 2 cut(s) 462, 1670
BslI CCNNNNNNNGG 1 cut(s) 1207
BsmAI GTCTC 3 cut(s) 607, 1231, 1456
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 3 cut(s) 607, 1231, 1456
BsoBI CYCGRG 2 cut(s) 299, 1620
Bsp119I TTCGAA 4 cut(s) 276, 873, 966, 1346
Bsp1286I GDGCHC 1 cut(s) 768
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
Bsp1720I GCTNAGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 4 cut(s) 136, 151, 780, 1466
BspDI ATCGAT 1 cut(s) 240
BspHI TCATGA 2 cut(s) 325, 694
BspLI GGNNCC 2 cut(s) 1184, 1674
BspMI ACCTGC 2 cut(s) 148, 1213
BspPI GGATC 2 cut(s) 462, 1661
BspT104I TTCGAA 4 cut(s) 276, 873, 966, 1346
BspT107I GGYRCC 1 cut(s) 1672
BspTNI GGTCTC 3 cut(s) 607, 1231, 1456
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 1170
BssMI GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
Bst4CI ACNGT 4 cut(s) 819, 1016, 1062, 1468
Bst6I CTCTTC 1 cut(s) 1512
BstAPI GCANNNNNTGC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 1129
BstBI TTCGAA 4 cut(s) 276, 873, 966, 1346
BstC8I GCNNGC 1 cut(s) 1317
BstDEI CTNAG 9 cut(s) 48, 123, 138, 494, 607, 767, 1337, 1453, 1526
BstF5I GGATG 8 cut(s) 504, 628, 943, 1012, 1197, 1216, 1375, 1615
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 9 cut(s) 103, 166, 240, 457, 679, 777, 1375, 1591, 1669
BstMAI GTCTC 3 cut(s) 607, 1231, 1456
BstMBI GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
BstMWI GCNNNNNNNGC 3 cut(s) 44, 310, 587
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 460
BstSNI TACGTA 1 cut(s) 1129
BstV1I GCAGC 4 cut(s) 47, 262, 322, 599
BstX2I RGATCY 1 cut(s) 454
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 240
BtgZI GCGATG 2 cut(s) 260, 1106
BtsCI GGATG 8 cut(s) 504, 628, 943, 1012, 1197, 1216, 1375, 1615
BtsI GCAGTG 2 cut(s) 540, 1655
BtsIMutI CAGTG 4 cut(s) 540, 775, 1058, 1655
BveI ACCTGC 2 cut(s) 148, 1213
Cac8I GCNNGC 1 cut(s) 1317
CciI TCATGA 2 cut(s) 325, 694
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 1 cut(s) 242
Csp6I GTAC 8 cut(s) 340, 847, 960, 1056, 1121, 1232, 1615, 1673
CviQI GTAC 8 cut(s) 340, 847, 960, 1056, 1121, 1232, 1615, 1673
DdeI CTNAG 9 cut(s) 48, 123, 138, 494, 607, 767, 1337, 1453, 1526
DpnI GATC 9 cut(s) 102, 165, 239, 456, 678, 776, 1374, 1590, 1668
DpnII GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
DraIII CACNNNGTG 1 cut(s) 783
Eam1104I CTCTTC 1 cut(s) 1512
EarI CTCTTC 1 cut(s) 1512
Ecl136II GAGCTC 1 cut(s) 766
Eco105I TACGTA 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 768
Eco31I GGTCTC 3 cut(s) 607, 1231, 1456
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 2 cut(s) 192, 1008
Eco88I CYCGRG 2 cut(s) 299, 1620
EcoICRI GAGCTC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 142
EcoT22I ATGCAT 4 cut(s) 92, 504, 583, 955
EcoT38I GRGCYC 1 cut(s) 768
FalI AAGNNNNNCTT 2 cut(s) 1509, 1541
FauNDI CATATG 2 cut(s) 306, 955
FbaI TGATCA 2 cut(s) 163, 676
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 4 cut(s) 36, 251, 311, 588
FokI GGATG 8 cut(s) 511, 615, 950, 1019, 1184, 1223, 1382, 1622
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 4 cut(s) 36, 251, 311, 588
FspBI CTAG 5 cut(s) 518, 780, 1271, 1419, 1578
GlaI GCGC 1 cut(s) 68
GluI GCNGC 4 cut(s) 36, 251, 311, 588
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 462, 1670
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 69
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 136, 528, 1496, 1564
HpaII CCGG 2 cut(s) 462, 1670
HphI GGTGA 5 cut(s) 74, 224, 518, 529, 539
Hpy166II GTNNAC 4 cut(s) 1012, 1058, 1123, 1617
Hpy188I TCNGA 4 cut(s) 200, 454, 1456, 1563
Hpy188III TCNNGA 4 cut(s) 125, 326, 632, 695
Hpy8I GTNNAC 4 cut(s) 1012, 1058, 1123, 1617
Hpy99I CGWCG 1 cut(s) 892
HpyAV CCTTC 4 cut(s) 71, 155, 434, 1498
HpyCH4III ACNGT 4 cut(s) 819, 1016, 1062, 1468
HpyCH4IV ACGT 1 cut(s) 1128
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 310, 587
HpyF3I CTNAG 9 cut(s) 48, 123, 138, 494, 607, 767, 1337, 1453, 1526
HpySE526I ACGT 1 cut(s) 1128
HspAI GCGC 1 cut(s) 67
KpnI GGTACC 1 cut(s) 1676
Ksp22I TGATCA 2 cut(s) 163, 676
Kzo9I GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
LmnI GCTCC 1 cut(s) 1188
Lsp1109I GCAGC 4 cut(s) 47, 262, 322, 599
LweI GCATC 7 cut(s) 232, 237, 409, 489, 499, 700, 940
MaeI CTAG 5 cut(s) 518, 780, 1271, 1419, 1578
MaeII ACGT 1 cut(s) 1128
MaeIII GTNAC 5 cut(s) 212, 428, 813, 1096, 1291
MalI GATC 9 cut(s) 102, 165, 239, 456, 678, 776, 1374, 1590, 1668
MboI GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
MboII GAAGA 8 cut(s) 384, 521, 533, 658, 980, 1054, 1407, 1529
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 8 cut(s) 11, 76, 118, 554, 921, 993, 1080, 1662
MlyI GAGTC 2 cut(s) 130, 522
MmeI TCCRAC 1 cut(s) 1222
MnlI CCTC 8 cut(s) 177, 180, 627, 642, 1078, 1165, 1600, 1663
Mph1103I ATGCAT 4 cut(s) 92, 504, 583, 955
MroXI GAANNNNTTC 4 cut(s) 60, 205, 993, 1521
MseI TTAA 5 cut(s) 446, 470, 905, 1479, 1569
MslI CAYNNNNRTG 3 cut(s) 330, 1309, 1622
MspI CCGG 2 cut(s) 462, 1670
MspR9I CCNGG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 44, 310, 587
NciI CCSGG 1 cut(s) 462
NdeI CATATG 2 cut(s) 306, 955
NdeII GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
NlaIV GGNNCC 2 cut(s) 1184, 1674
NmeAIII GCCGAG 1 cut(s) 1195
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 4 cut(s) 92, 504, 583, 955
NspI RCATGY 1 cut(s) 661
NspV TTCGAA 4 cut(s) 276, 873, 966, 1346
OliI CACNNNNGTG 1 cut(s) 1622
PaeR7I CTCGAG 1 cut(s) 299
PagI TCATGA 2 cut(s) 325, 694
PciI ACATGT 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PdmI GAANNNNTTC 4 cut(s) 60, 205, 993, 1521
PfeI GAWTC 2 cut(s) 1496, 1564
PkrI GCNGC 4 cut(s) 37, 252, 312, 589
PleI GAGTC 2 cut(s) 130, 522
PpsI GAGTC 2 cut(s) 130, 522
Ppu21I YACGTR 1 cut(s) 1129
PscI ACATGT 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 768
PspN4I GGNNCC 2 cut(s) 1184, 1674
PspPI GGNCC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 299
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 8 cut(s) 341, 848, 961, 1057, 1122, 1233, 1616, 1674
RsaNI GTAC 8 cut(s) 340, 847, 960, 1056, 1121, 1232, 1615, 1673
RseI CAYNNNNRTG 3 cut(s) 330, 1309, 1622
SacI GAGCTC 1 cut(s) 768
SalI GTCGAC 1 cut(s) 1010
SaqAI TTAA 5 cut(s) 446, 470, 905, 1479, 1569
SatI GCNGC 4 cut(s) 36, 251, 311, 588
Sau3AI GATC 9 cut(s) 100, 163, 237, 454, 676, 774, 1372, 1588, 1666
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 130, 522
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 7 cut(s) 232, 237, 409, 489, 499, 700, 940
Sfr274I CTCGAG 1 cut(s) 299
SfuI TTCGAA 4 cut(s) 276, 873, 966, 1346
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 330, 1309, 1622
SmlI CTYRAG 3 cut(s) 299, 600, 1149
SmoI CTYRAG 3 cut(s) 299, 600, 1149
SnaBI TACGTA 1 cut(s) 1129
Sse9I AATT 8 cut(s) 11, 76, 118, 554, 921, 993, 1080, 1662
SspI AATATT 1 cut(s) 981
SspMI CTAG 5 cut(s) 518, 780, 1271, 1419, 1578
SstI GAGCTC 1 cut(s) 768
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 819, 1016, 1062, 1468
TaiI ACGT 1 cut(s) 1131
TaqI TCGA 9 cut(s) 240, 276, 300, 873, 887, 966, 1011, 1259, 1346
TasI AATT 8 cut(s) 11, 76, 118, 554, 921, 993, 1080, 1662
TatI WGTACW 4 cut(s) 339, 846, 1120, 1614
TfiI GAWTC 2 cut(s) 1496, 1564
Tru1I TTAA 5 cut(s) 446, 470, 905, 1479, 1569
Tru9I TTAA 5 cut(s) 446, 470, 905, 1479, 1569
TscAI CASTG 4 cut(s) 547, 775, 1065, 1662
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 4 cut(s) 35, 250, 310, 587
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 4 cut(s) 547, 775, 1065, 1662
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 4 cut(s) 60, 205, 993, 1521
XspI CTAG 5 cut(s) 518, 780, 1271, 1419, 1578
Zsp2I ATGCAT 4 cut(s) 92, 504, 583, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.