Rh5CG431900

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000053
Physical Location & Seq
Forward (+)
59769513 .. 59774027
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG431900.1

Sequence Viewer

Length: 1671 bp
ATGTCTCTAATTTTGACATCTCAAGCTCAACGGCCAAATACCATTGCTGATGTTAAGCGACCTTCAGCTAATTATACCCCAAGCATTTGGGGAGATCATTTTCTCTCTTATGCTACCATGGAAGTTGACATTAAACTTGAGCAACACGTCCGACAACTGAAAGAAGAGGTGAAGAAGATGCTGATGGACCCCTTAAAAAGCCCTTCACAACAATTGAACTTGATTGATGACATTCAACGTCTAGGCGTGTCCTATCATTTCAAAAATGAGATTGATGGAATTTTGAAACAAATTCACCACAACTACTCTTATGGTAGTGAAGATGATCTTTACACTACTGCTCTCCGTTTTAGATTGCTTAGGCAACAAGGTTGCAATGTTTCATGCGATATGTTCAACAAGTTCAAGGAAGGAAATGATCAAAAATTTAAGGCATCTCTTTTGAGTGATGTATCAGGACTATTAAGCTTGTACGAAGCCACCCATCTTAGGATACATGGAGAAGGCATACTAGAAGAGGCACTATCCTTCACCACCACTCATCTTCAGTCGATCAAACACAGTTTAAGTTCTTCACTCTCAAAAGAAGTAGCTCATGCCTTAATGCAGCCACTTCGAAAGGGCATCAACAGGGTGGAAGCTAGATATTACTTGTCAATCTATCATGAACGCGATTCACATAACGACACTCTCTTGACTTTTGCAAAGTTGGATTTCAACCTAGTGCAGAAAATCCATCAAAAGGAACTATGTGAAGTTACAAGGTGGTGGAAGGACTTGGACGTGAGAAACACGTTGCCATTTACAAGAGACAAAGCTACCGAAGTTTACTTTTGCTGGGCTTTGTCAGTGTACTTCGAACCTCAATATTCGTATGCTAGGAAGATATCATCCAAAGTCACTGCCATGGCATCTATTATTGATGACATTTATGATGCCCACGGCACATTCGAAGAACTGGAGCTATTTACTGAAGCTATTCAGAGGTGGGATGTTTGTGCCATAGATCCATTACCAGATTATATGAAAGTCTGTTATAAGGCACTATTAGAAGCCTATACTGAAATTGAAGAACAGCTTGCAAAGGAAGGAAAGTTGTATCGAATCCACTACGCCAGAGAAGCTATGAAAAAGCTAGTTGAAAGTTACTTCCTTGAAGCTAAATGGTTGCACCAAAAACACATACCAATAGTGGATGAATATATGGCTTTAGCATTAATGACCACAGGCTACCCTATGCTAATAACAACATCTTTTCTTGGAATGGGAGATATTGCTACACAAGAATCCTTTGAGTGGTTGGCCACTTATCCTAGGGCTGTAAAAGGGGCTGCGGCAGTTTGCCGAATCATGGATGACATAGTGGGCCATAAGGATGAACAAAAGAGAGAACATGTTACCTCAGCTGTGGAGTGCTACATGAAAGAATATGGTGCCACAGAAGAACAAGCAATAATCGAATTGCGTAGAAAATTGAGTGACGCATGGAAGGACATAAACGAATCGTTTCATCCCCCTAATGTTGTTCCAAGGGCACTGCTAACTCGAATTATTAACTTTGCATGTGTCATGGATGTTGTATACAAGTATGTAGATGGTTACAGTACTCATGATGATACTGTGCTGAAGGATTTTATAGTTTCTACACTTGTGCAACCCGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

556

Amino Acids

64.24

Weight (kDa)

5.92

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 29 - 201 1.6e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 258 - 498 5.2e-95 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 299 - 498 9.5e-61 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AccB1I GGYRCC 1 cut(s) 1433
AccI GTMKAC 1 cut(s) 1581
AccII CGCG 1 cut(s) 672
AciI CCGC 1 cut(s) 1334
AclWI GGATC 1 cut(s) 1001
AcoI YGGCCR 2 cut(s) 32, 1302
AcsI RAATTY 3 cut(s) 279, 291, 425
AcuI CTGAAG 4 cut(s) 48, 530, 993, 1646
AfaI GTAC 3 cut(s) 473, 854, 1606
AfiI CCNNNNNNNGG 4 cut(s) 489, 742, 1296, 1351
AflIII ACRYGT 3 cut(s) 145, 792, 1393
AjiI CACGTC 2 cut(s) 148, 784
Alw26I GTCTC 2 cut(s) 9, 804
AlwI GGATC 1 cut(s) 1001
AoxI GGCC 3 cut(s) 32, 1302, 1366
ApeKI GCWGC 2 cut(s) 607, 1331
ApoI RAATTY 3 cut(s) 279, 291, 425
AseI ATTAAT 1 cut(s) 1217
Asp700I GAANNNNTTC 2 cut(s) 978, 1506
AspA2I CCTAGG 1 cut(s) 1313
AspS9I GGNCC 2 cut(s) 187, 1366
AsuHPI GGTGA 3 cut(s) 181, 287, 523
AsuII TTCGAA 3 cut(s) 616, 858, 951
AvaII GGWCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 1313
BaeGI GKGCMC 1 cut(s) 1537
BalI TGGCCA 1 cut(s) 1304
BanI GGYRCC 1 cut(s) 1433
BbvCI CCTCAGC 1 cut(s) 1402
BbvI GCAGC 2 cut(s) 619, 1318
BccI CCATC 5 cut(s) 178, 269, 492, 744, 1589
BceAI ACGGC 2 cut(s) 47, 958
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 9, 804
BfaI CTAG 7 cut(s) 242, 512, 642, 722, 879, 1136, 1314
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 3 cut(s) 608, 1332, 1335
BlnI CCTAGG 1 cut(s) 1313
BlsI GCNGC 3 cut(s) 609, 1333, 1336
BmcAI AGTACT 1 cut(s) 1606
Bme18I GGWCC 1 cut(s) 187
BmgBI CACGTC 2 cut(s) 148, 784
BmgT120I GGNCC 2 cut(s) 187, 1366
BmiI GGNNCC 2 cut(s) 189, 1435
BmsI GCATC 5 cut(s) 168, 443, 633, 920, 925
BpmI CTGGAG 1 cut(s) 980
Bpu10I CCTNAGC 2 cut(s) 359, 1402
Bpu14I TTCGAA 3 cut(s) 616, 858, 951
BpuEI CTTGAG 2 cut(s) 6, 158
BsaJI CCNNGG 5 cut(s) 117, 906, 940, 1313, 1529
Bsc4I CCNNNNNNNGG 4 cut(s) 489, 742, 1296, 1351
Bse1I ACTGG 1 cut(s) 963
Bse3DI GCAATG 2 cut(s) 42, 382
BseDI CCNNGG 5 cut(s) 117, 906, 940, 1313, 1529
BseGI GGATG 7 cut(s) 890, 997, 1201, 1360, 1381, 1510, 1579
BseLI CCNNNNNNNGG 4 cut(s) 489, 742, 1296, 1351
BseMI GCAATG 2 cut(s) 42, 382
BseMII CTCAG 1 cut(s) 1416
BseNI ACTGG 1 cut(s) 963
BseSI GKGCMC 1 cut(s) 1537
BseXI GCAGC 2 cut(s) 619, 1318
BseYI CCCAGC 1 cut(s) 837
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 3 cut(s) 34, 1304, 1368
BshNI GGYRCC 1 cut(s) 1433
BslI CCNNNNNNNGG 4 cut(s) 489, 742, 1296, 1351
BsmAI GTCTC 2 cut(s) 9, 804
BsnI GGCC 3 cut(s) 34, 1304, 1368
Bsp119I TTCGAA 3 cut(s) 616, 858, 951
Bsp1286I GDGCHC 1 cut(s) 1537
Bsp143I GATC 5 cut(s) 94, 325, 418, 552, 1006
Bsp19I CCATGG 2 cut(s) 117, 906
BspACI CCGC 1 cut(s) 1334
BspANI GGCC 3 cut(s) 34, 1304, 1368
BspCNI CTCAG 1 cut(s) 1415
BspFNI CGCG 1 cut(s) 672
BspHI TCATGA 2 cut(s) 664, 1609
BspLI GGNNCC 2 cut(s) 189, 1435
BspPI GGATC 1 cut(s) 1001
BspT104I TTCGAA 3 cut(s) 616, 858, 951
BspT107I GGYRCC 1 cut(s) 1433
BsrDI GCAATG 2 cut(s) 42, 382
BsrI ACTGG 1 cut(s) 963
BssECI CCNNGG 5 cut(s) 117, 906, 940, 1313, 1529
BssMI GATC 5 cut(s) 94, 325, 418, 552, 1006
BssNAI GTATAC 1 cut(s) 1582
BssT1I CCWWGG 4 cut(s) 117, 906, 1313, 1529
Bst1107I GTATAC 1 cut(s) 1582
Bst4CI ACNGT 3 cut(s) 563, 1604, 1621
Bst6I CTCTTC 2 cut(s) 159, 510
BstAPI GCANNNNNTGC 1 cut(s) 1660
BstBI TTCGAA 3 cut(s) 616, 858, 951
BstC8I GCNNGC 1 cut(s) 1080
BstDEI CTNAG 3 cut(s) 359, 488, 1402
BstDSI CCRYGG 3 cut(s) 117, 906, 940
BstF5I GGATG 7 cut(s) 890, 997, 1201, 1360, 1381, 1510, 1579
BstFNI CGCG 1 cut(s) 672
BstKTI GATC 5 cut(s) 97, 328, 421, 555, 1009
BstMAI GTCTC 2 cut(s) 9, 804
BstMBI GATC 5 cut(s) 94, 325, 418, 552, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 1121, 1660
BstNSI RCATGY 2 cut(s) 1397, 1566
BstSLI GKGCMC 1 cut(s) 1537
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 619, 1318
BstX2I RGATCY 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 1 cut(s) 1006
BstZ17I GTATAC 1 cut(s) 1582
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 34, 1304, 1368
BtgI CCRYGG 3 cut(s) 117, 906, 940
BtrI CACGTC 2 cut(s) 148, 784
BtsCI GGATG 7 cut(s) 890, 997, 1201, 1360, 1381, 1510, 1579
BtsI GCAGTG 2 cut(s) 900, 1535
BtsIMutI CAGTG 3 cut(s) 855, 900, 1535
Cac8I GCNNGC 1 cut(s) 1080
CciI TCATGA 2 cut(s) 664, 1609
Cfr13I GGNCC 2 cut(s) 187, 1366
CseI GACGC 1 cut(s) 1490
Csp6I GTAC 3 cut(s) 472, 853, 1605
CviQI GTAC 3 cut(s) 472, 853, 1605
DdeI CTNAG 3 cut(s) 359, 488, 1402
DpnI GATC 5 cut(s) 96, 327, 420, 554, 1008
DpnII GATC 5 cut(s) 94, 325, 418, 552, 1006
EaeI YGGCCR 2 cut(s) 32, 1302
Eam1104I CTCTTC 2 cut(s) 159, 510
EarI CTCTTC 2 cut(s) 159, 510
Eco130I CCWWGG 4 cut(s) 117, 906, 1313, 1529
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 4 cut(s) 48, 530, 993, 1646
EcoRV GATATC 1 cut(s) 888
EcoT14I CCWWGG 4 cut(s) 117, 906, 1313, 1529
ErhI CCWWGG 4 cut(s) 117, 906, 1313, 1529
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 1062, 1094
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 1581
Fnu4HI GCNGC 3 cut(s) 608, 1332, 1335
FokI GGATG 7 cut(s) 877, 1004, 1208, 1367, 1388, 1497, 1586
Fsp4HI GCNGC 3 cut(s) 608, 1332, 1335
FspBI CTAG 7 cut(s) 242, 512, 642, 722, 879, 1136, 1314
GluI GCNGC 3 cut(s) 608, 1332, 1335
GsaI CCCAGC 1 cut(s) 841
GsuI CTGGAG 1 cut(s) 980
HaeIII GGCC 3 cut(s) 34, 1304, 1368
HgaI GACGC 1 cut(s) 1490
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 5 cut(s) 674, 1104, 1286, 1347, 1502
HphI GGTGA 3 cut(s) 181, 287, 523
Hpy166II GTNNAC 4 cut(s) 127, 829, 853, 1582
Hpy188I TCNGA 2 cut(s) 152, 984
Hpy188III TCNNGA 4 cut(s) 456, 665, 694, 1610
Hpy8I GTNNAC 4 cut(s) 127, 829, 853, 1582
HpyAV CCTTC 9 cut(s) 72, 213, 404, 497, 538, 766, 1082, 1483, 1621
HpyCH4III ACNGT 3 cut(s) 563, 1604, 1621
HpyCH4IV ACGT 4 cut(s) 147, 238, 783, 794
HpyCH4V TGCA 8 cut(s) 375, 607, 704, 727, 1082, 1171, 1562, 1654
HpyF10VI GCNNNNNNNGC 2 cut(s) 1121, 1660
HpyF3I CTNAG 3 cut(s) 359, 488, 1402
HpySE526I ACGT 4 cut(s) 147, 238, 783, 794
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 5 cut(s) 94, 325, 418, 552, 1006
LmnI GCTCC 1 cut(s) 961
LpnPI CCDG 7 cut(s) 441, 616, 823, 944, 1029, 1129, 1212
Lsp1109I GCAGC 2 cut(s) 619, 1318
LweI GCATC 5 cut(s) 168, 443, 633, 920, 925
MaeI CTAG 7 cut(s) 242, 512, 642, 722, 879, 1136, 1314
MaeII ACGT 4 cut(s) 147, 238, 783, 794
MaeIII GTNAC 6 cut(s) 757, 898, 1145, 1396, 1478, 1598
MalI GATC 5 cut(s) 96, 327, 420, 554, 1008
MboI GATC 5 cut(s) 94, 325, 418, 552, 1006
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 1537
MlsI TGGCCA 1 cut(s) 1304
MluNI TGGCCA 1 cut(s) 1304
MmeI TCCRAC 2 cut(s) 175, 690
MnlI CCTC 5 cut(s) 160, 511, 873, 978, 1411
Mox20I TGGCCA 1 cut(s) 1304
MroXI GAANNNNTTC 2 cut(s) 978, 1506
MscI TGGCCA 1 cut(s) 1304
MseI TTAA 9 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217, 1554
MslI CAYNNNNRTG 2 cut(s) 905, 1374
Msp20I TGGCCA 1 cut(s) 1304
MspA1I CMGCKG 1 cut(s) 1406
MunI CAATTG 1 cut(s) 212
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 1121, 1660
NcoI CCATGG 2 cut(s) 117, 906
NdeII GATC 5 cut(s) 94, 325, 418, 552, 1006
NlaIV GGNNCC 2 cut(s) 189, 1435
NmuCI GTSAC 2 cut(s) 898, 1478
NspI RCATGY 2 cut(s) 1397, 1566
NspV TTCGAA 3 cut(s) 616, 858, 951
PagI TCATGA 2 cut(s) 664, 1609
PciI ACATGT 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 1 cut(s) 948
PdmI GAANNNNTTC 2 cut(s) 978, 1506
PfeI GAWTC 5 cut(s) 674, 1104, 1286, 1347, 1502
PkrI GCNGC 3 cut(s) 609, 1333, 1336
PscI ACATGT 1 cut(s) 1393
PshBI ATTAAT 1 cut(s) 1217
PsiI TTATAA 1 cut(s) 1038
PspFI CCCAGC 1 cut(s) 837
PspN4I GGNNCC 2 cut(s) 189, 1435
PspPI GGNCC 2 cut(s) 187, 1366
PsuI RGATCY 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 3 cut(s) 473, 854, 1606
RsaNI GTAC 3 cut(s) 472, 853, 1605
RseI CAYNNNNRTG 2 cut(s) 905, 1374
SaqAI TTAA 9 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217, 1554
SatI GCNGC 3 cut(s) 608, 1332, 1335
Sau3AI GATC 5 cut(s) 94, 325, 418, 552, 1006
Sau96I GGNCC 2 cut(s) 187, 1366
ScaI AGTACT 1 cut(s) 1606
SduI GDGCHC 1 cut(s) 1537
SfaNI GCATC 5 cut(s) 168, 443, 633, 920, 925
SfuI TTCGAA 3 cut(s) 616, 858, 951
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 2 cut(s) 905, 1374
SmlI CTYRAG 2 cut(s) 21, 137
SmoI CTYRAG 2 cut(s) 21, 137
SsiI CCGC 1 cut(s) 1334
SspI AATATT 1 cut(s) 869
SspMI CTAG 7 cut(s) 242, 512, 642, 722, 879, 1136, 1314
StyI CCWWGG 4 cut(s) 117, 906, 1313, 1529
TaaI ACNGT 3 cut(s) 563, 1604, 1621
TaiI ACGT 4 cut(s) 150, 241, 786, 797
TaqI TCGA 7 cut(s) 551, 616, 858, 951, 1102, 1458, 1546
TatI WGTACW 2 cut(s) 852, 1604
TauI GCSGC 1 cut(s) 1337
TfiI GAWTC 5 cut(s) 674, 1104, 1286, 1347, 1502
Tru1I TTAA 9 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217, 1554
Tru9I TTAA 9 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217, 1554
TscAI CASTG 3 cut(s) 855, 907, 1542
TseFI GTSAC 2 cut(s) 898, 1478
TseI GCWGC 2 cut(s) 607, 1331
Tsp45I GTSAC 2 cut(s) 898, 1478
TspDTI ATGAA 8 cut(s) 372, 681, 1040, 1142, 1212, 1392, 1436, 1499
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 855, 907, 1542
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 1217
XapI RAATTY 3 cut(s) 279, 291, 425
XceI RCATGY 2 cut(s) 1397, 1566
XmaJI CCTAGG 1 cut(s) 1313
XmiI GTMKAC 1 cut(s) 1581
XmnI GAANNNNTTC 2 cut(s) 978, 1506
XspI CTAG 7 cut(s) 242, 512, 642, 722, 879, 1136, 1314
ZrmI AGTACT 1 cut(s) 1606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.