Rmu_sc0001217.1_g000009

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001217.1
OG0000053
Physical Location & Seq
Forward (+)
46263 .. 48197
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001217.1_g000009.1.cds

Sequence Viewer

Length: 1284 bp
atgttcaacaagtacttcaaggagggtaatgacgagaaatttaaggaatctcttttgagtgatgtatcaggactattaagtttatacgaagccacccatcttaggatacacggtgaagacatactcgaagaggcactagccttcaccaccacacatctcgagtcgatgaaagacagtttaagccctccactttcgaaacaagtagcccattccttaaatcagccactacataagggcatcactagggtggaagcaagatattacttatcaatctaccacgaatgcaattcacataatgaaactctcctgacttttgcgaagttggatttcaacctgttgcagcagctccatcaaaacgaactttgtgaaattacaaggtggtggaaggacttggacgtgagaaacgagctgctgtttacaagagacagagttactgaggtttacttctgctgggcttcatcagtctgctttgaacctgaatattcctttgctaggaggacattatgcaaagttacagccctggcatccattctcgatgacatttatgatttgtatggcacattcgaagaactagagatctttactgaagctattgagaggtgggatatatgtttcatggatgcactgccaaactatatgaaagtctattataaggcattgttagacgtgtatactgaagttgaagaagagcttgcaaaggagggaaagttgtatcgaatccattatgccatagaagctatgaaaaagctagctcaatgttactttcttgaagcgaaatggttccaccagaaacatgtaccaacagtggatgagtatattgccctatcatcactgacgtcaggctacccactgcttgtgaccacctcttttgttacaatgggagatattgctacacaagattcctttgactggttggccacttatcccaaacctgtgaaagggtgtgcaatagttgcccgacttatggatgacttggtgtctcacaagtttgagcaaaaaagaggacatgttgcgtcagccgtagagtgctacacgaaagaatttggtgccacacaagaagaagcaataattgcattgcgtagaaaggtgagtggcgcatggaaggacataaacgaatcgttcctcttccccaatgccatttcaaggccactgctgactcgaattcttaatttagcatgcgtcatggatgttgtttacaagaatgaagatggttacactactgatcaacatggtatgctcaaggatcttatagtttctacactaatccaacaagtgcctgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

427

Amino Acids

49.37

Weight (kDa)

5.27

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AatII GACGTC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 1046
AccI GTMKAC 1 cut(s) 671
AclWI GGATC 1 cut(s) 1251
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 3 cut(s) 38, 1040, 1161
AcuI CTGAAG 2 cut(s) 606, 696
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 2 cut(s) 14, 798
AfiI CCNNNNNNNGG 6 cut(s) 102, 492, 909, 938, 964, 1143
AflIII ACRYGT 3 cut(s) 666, 793, 1006
AgsI TTSAA 7 cut(s) 7, 19, 331, 473, 683, 770, 1143
AhdI GACNNNNNGTC 1 cut(s) 976
AjiI CACGTC 2 cut(s) 397, 667
AjnI CCWGG 1 cut(s) 519
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 7 cut(s) 346, 409, 590, 691, 737, 748, 752
AluI AGCT 7 cut(s) 346, 409, 590, 691, 737, 748, 752
Alw26I GTCTC 2 cut(s) 417, 984
AlwI GGATC 1 cut(s) 1251
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 2 cut(s) 915, 1145
ApeKI GCWGC 3 cut(s) 340, 343, 409
ApoI RAATTY 3 cut(s) 38, 1040, 1161
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 1 cut(s) 1097
AsuHPI GGTGA 3 cut(s) 125, 136, 1099
AsuII TTCGAA 2 cut(s) 194, 564
AsuNHI GCTAGC 1 cut(s) 748
AvaI CYCGRG 1 cut(s) 158
BalI TGGCCA 1 cut(s) 917
BanI GGYRCC 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 352, 355, 396
BccI CCATC 3 cut(s) 105, 357, 1202
BceAI ACGGC 1 cut(s) 1004
BciT130I CCWGG 1 cut(s) 521
BciVI GTATCC 1 cut(s) 99
BclI TGATCA 1 cut(s) 1222
BcoDI GTCTC 2 cut(s) 417, 984
BfaI CTAG 5 cut(s) 137, 243, 492, 572, 749
BfuI GTATCC 1 cut(s) 99
BglII AGATCT 1 cut(s) 576
BisI GCNGC 3 cut(s) 341, 344, 410
BlsI GCNGC 3 cut(s) 342, 345, 411
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 521
BmeRI GACNNNNNGTC 1 cut(s) 976
BmeT110I CYCGRG 1 cut(s) 158
BmgBI CACGTC 2 cut(s) 397, 667
BmiI GGNNCC 2 cut(s) 782, 1048
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 3 cut(s) 246, 533, 610
BmtI GCTAGC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 123
Bpu14I TTCGAA 2 cut(s) 194, 564
BpuEI CTTGAG 1 cut(s) 1223
BsaHI GRCGYC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 519
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 492, 909, 938, 964, 1143
Bse1I ACTGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 1073
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 5 cut(s) 524, 625, 814, 973, 1192
BseLI CCNNNNNNNGG 6 cut(s) 102, 492, 909, 938, 964, 1143
BseMI GCAATG 1 cut(s) 1073
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 914
BseXI GCAGC 3 cut(s) 352, 355, 396
BseYI CCCAGC 1 cut(s) 450
BshFI GGCC 2 cut(s) 917, 1147
BshNI GGYRCC 1 cut(s) 1046
BsiHKCI CYCGRG 1 cut(s) 158
BslI CCNNNNNNNGG 6 cut(s) 102, 492, 909, 938, 964, 1143
BsmAI GTCTC 2 cut(s) 417, 984
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 2 cut(s) 917, 1147
BsoBI CYCGRG 1 cut(s) 158
Bsp119I TTCGAA 2 cut(s) 194, 564
Bsp143I GATC 3 cut(s) 576, 1222, 1243
BspANI GGCC 2 cut(s) 917, 1147
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 782, 1048
BspOI GCTAGC 1 cut(s) 752
BspPI GGATC 1 cut(s) 1251
BspQI GCTCTTC 1 cut(s) 681
BspT104I TTCGAA 2 cut(s) 194, 564
BspT107I GGYRCC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 1073
BsrI ACTGG 1 cut(s) 914
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 576, 1222, 1243
BssNAI GTATAC 1 cut(s) 672
BssNI GRCGYC 1 cut(s) 836
Bst1107I GTATAC 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 3 cut(s) 113, 176, 805
Bst6I CTCTTC 3 cut(s) 123, 681, 1130
BstACI GRCGYC 1 cut(s) 836
BstAPI GCANNNNNTGC 2 cut(s) 953, 1070
BstBI TTCGAA 2 cut(s) 194, 564
BstC8I GCNNGC 3 cut(s) 693, 750, 1177
BstDEI CTNAG 2 cut(s) 101, 435
BstENI CCTNNNNNAGG 2 cut(s) 490, 936
BstF5I GGATG 5 cut(s) 524, 625, 814, 973, 1192
BstHHI GCGC 1 cut(s) 1097
BstKTI GATC 3 cut(s) 579, 1225, 1246
BstMAI GTCTC 2 cut(s) 417, 984
BstMBI GATC 3 cut(s) 576, 1222, 1243
BstMWI GCNNNNNNNGC 3 cut(s) 734, 953, 1070
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 3 cut(s) 797, 1010, 1179
BstSCI CCNGG 1 cut(s) 519
BstV1I GCAGC 3 cut(s) 352, 355, 396
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 576, 1243
BstYI RGATCY 2 cut(s) 576, 1243
BstZ17I GTATAC 1 cut(s) 672
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 917, 1147
BtrI CACGTC 2 cut(s) 397, 667
BtsCI GGATG 5 cut(s) 524, 625, 814, 973, 1192
BtsI GCAGTG 3 cut(s) 623, 848, 1148
BtsIMutI CAGTG 5 cut(s) 623, 810, 830, 848, 1148
Cac8I GCNNGC 3 cut(s) 693, 750, 1177
CfoI GCGC 1 cut(s) 1097
CseI GACGC 2 cut(s) 1002, 1168
Csp6I GTAC 2 cut(s) 13, 797
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 7 cut(s) 616, 794, 1007, 1098, 1176, 1183, 1229
CviQI GTAC 2 cut(s) 13, 797
DdeI CTNAG 2 cut(s) 101, 435
DpnI GATC 3 cut(s) 578, 1224, 1245
DpnII GATC 3 cut(s) 576, 1222, 1243
DriI GACNNNNNGTC 1 cut(s) 976
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 3 cut(s) 123, 681, 1130
Eam1105I GACNNNNNGTC 1 cut(s) 976
EarI CTCTTC 3 cut(s) 123, 681, 1130
Eco57I CTGAAG 2 cut(s) 606, 696
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 2 cut(s) 490, 936
EcoRI GAATTC 1 cut(s) 1161
EcoRII CCWGG 1 cut(s) 519
FaeI CATG 7 cut(s) 619, 797, 1010, 1101, 1179, 1186, 1232
FalI AAGNNNNNCTT 2 cut(s) 675, 707
FatI CATG 7 cut(s) 615, 793, 1006, 1097, 1175, 1182, 1228
FbaI TGATCA 1 cut(s) 1222
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 3 cut(s) 341, 344, 410
FokI GGATG 5 cut(s) 511, 632, 821, 980, 1199
Fsp4HI GCNGC 3 cut(s) 341, 344, 410
FspBI CTAG 5 cut(s) 137, 243, 492, 572, 749
GlaI GCGC 1 cut(s) 1096
GluI GCNGC 3 cut(s) 341, 344, 410
GsaI CCCAGC 1 cut(s) 454
HaeIII GGCC 2 cut(s) 917, 1147
HgaI GACGC 2 cut(s) 1002, 1168
HhaI GCGC 1 cut(s) 1097
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 7 cut(s) 619, 797, 1010, 1101, 1179, 1186, 1232
Hin6I GCGC 1 cut(s) 1095
HinP1I GCGC 1 cut(s) 1095
HinfI GANTC 6 cut(s) 47, 161, 717, 899, 1115, 1156
HphI GGTGA 3 cut(s) 125, 136, 1099
Hpy166II GTNNAC 4 cut(s) 417, 442, 672, 1195
Hpy188III TCNNGA 5 cut(s) 69, 158, 307, 533, 767
Hpy8I GTNNAC 4 cut(s) 417, 442, 672, 1195
HpyAV CCTTC 3 cut(s) 151, 379, 1096
HpyCH4III ACNGT 3 cut(s) 113, 176, 805
HpyCH4IV ACGT 3 cut(s) 396, 666, 836
HpyCH4V TGCA 7 cut(s) 285, 340, 507, 623, 695, 947, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 734, 953, 1070
HpyF3I CTNAG 2 cut(s) 101, 435
HpySE526I ACGT 3 cut(s) 396, 666, 836
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 7 cut(s) 619, 797, 1010, 1101, 1179, 1186, 1232
HspAI GCGC 1 cut(s) 1095
Ksp22I TGATCA 1 cut(s) 1222
Kzo9I GATC 3 cut(s) 576, 1222, 1243
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 3 cut(s) 352, 355, 396
LweI GCATC 3 cut(s) 246, 533, 610
MaeI CTAG 5 cut(s) 137, 243, 492, 572, 749
MaeII ACGT 3 cut(s) 396, 666, 836
MaeIII GTNAC 6 cut(s) 430, 511, 758, 856, 871, 1211
MalI GATC 3 cut(s) 578, 1224, 1245
MboI GATC 3 cut(s) 576, 1222, 1243
MboII GAAGA 8 cut(s) 128, 140, 578, 695, 698, 1070, 1117, 1217
MflI RGATCY 2 cut(s) 576, 1243
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 7 cut(s) 38, 286, 369, 1040, 1068, 1161, 1168
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 2 cut(s) 170, 1150
MmeI TCCRAC 1 cut(s) 303
Mox20I TGGCCA 1 cut(s) 917
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 1 cut(s) 917
MseI TTAA 5 cut(s) 42, 77, 179, 215, 1167
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 917
MspR9I CCNGG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 3 cut(s) 734, 953, 1070
NdeII GATC 3 cut(s) 576, 1222, 1243
NheI GCTAGC 1 cut(s) 748
NlaIII CATG 7 cut(s) 619, 797, 1010, 1101, 1179, 1186, 1232
NlaIV GGNNCC 2 cut(s) 782, 1048
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 3 cut(s) 797, 1010, 1179
NspV TTCGAA 2 cut(s) 194, 564
OliI CACNNNNGTG 1 cut(s) 245
PaeI GCATGC 1 cut(s) 1179
PaeR7I CTCGAG 1 cut(s) 158
PciI ACATGT 2 cut(s) 793, 1006
PciSI GCTCTTC 1 cut(s) 681
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 47, 717, 899, 1115
PkrI GCNGC 3 cut(s) 342, 345, 411
PleI GAGTC 2 cut(s) 169, 1150
PpsI GAGTC 2 cut(s) 169, 1150
PscI ACATGT 2 cut(s) 793, 1006
PsiI TTATAA 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 519
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 782, 1048
PsuI RGATCY 2 cut(s) 576, 1243
RsaI GTAC 2 cut(s) 14, 798
RsaNI GTAC 2 cut(s) 13, 797
RseI CAYNNNNRTG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 5 cut(s) 42, 77, 179, 215, 1167
SatI GCNGC 3 cut(s) 341, 344, 410
Sau3AI GATC 3 cut(s) 576, 1222, 1243
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 2 cut(s) 170, 1150
ScrFI CCNGG 1 cut(s) 521
SfaNI GCATC 3 cut(s) 246, 533, 610
Sfr274I CTCGAG 1 cut(s) 158
SfuI TTCGAA 2 cut(s) 194, 564
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 158, 1238
SmoI CTYRAG 2 cut(s) 158, 1238
SphI GCATGC 1 cut(s) 1179
Sse9I AATT 7 cut(s) 38, 286, 369, 1040, 1068, 1161, 1168
SspI AATATT 1 cut(s) 482
SspMI CTAG 5 cut(s) 137, 243, 492, 572, 749
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 113, 176, 805
TaiI ACGT 3 cut(s) 399, 669, 839
TaqI TCGA 8 cut(s) 126, 159, 164, 194, 534, 564, 715, 1159
TasI AATT 7 cut(s) 38, 286, 369, 1040, 1068, 1161, 1168
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 4 cut(s) 47, 717, 899, 1115
Tru1I TTAA 5 cut(s) 42, 77, 179, 215, 1167
Tru9I TTAA 5 cut(s) 42, 77, 179, 215, 1167
TscAI CASTG 5 cut(s) 630, 810, 837, 855, 1155
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 3 cut(s) 340, 343, 409
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 7 cut(s) 182, 312, 447, 604, 653, 755, 1218
TspRI CASTG 5 cut(s) 630, 810, 837, 855, 1155
XagI CCTNNNNNAGG 2 cut(s) 490, 936
XapI RAATTY 3 cut(s) 38, 1040, 1161
XceI RCATGY 3 cut(s) 797, 1010, 1179
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 5 cut(s) 137, 243, 492, 572, 749
ZraI GACGTC 1 cut(s) 837
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.