(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 2 - 156 | 1e-56 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 213 - 443 | 6.1e-84 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 254 - 443 | 3.7e-52 | Terpene synthase family 2, C-terminal metal binding |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 671, 906, 1232 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 863 |
| AatII | GACGTC | 1 cut(s) | 861 |
| Acc36I | ACCTGC | 2 cut(s) | 594, 889 |
| AccB1I | GGYRCC | 1 cut(s) | 1268 |
| AccI | GTMKAC | 1 cut(s) | 924 |
| AccII | CGCG | 1 cut(s) | 537 |
| AciI | CCGC | 5 cut(s) | 345, 768, 1166, 1172, 1202 |
| AcoI | YGGCCR | 3 cut(s) | 1044, 1140, 1180 |
| AcsI | RAATTY | 3 cut(s) | 144, 156, 290 |
| AcyI | GRCGYC | 1 cut(s) | 858 |
| AfaI | GTAC | 3 cut(s) | 269, 719, 1424 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 354, 607, 744, 1134, 1189 |
| AflIII | ACRYGT | 2 cut(s) | 10, 1225 |
| AjiI | CACGTC | 1 cut(s) | 649 |
| AleI | CACNNNNGTG | 1 cut(s) | 497 |
| Alw21I | GWGCWC | 2 cut(s) | 831, 1461 |
| Alw26I | GTCTC | 3 cut(s) | 220, 545, 1422 |
| AoxI | GGCC | 3 cut(s) | 1044, 1140, 1180 |
| ApeKI | GCWGC | 3 cut(s) | 589, 592, 1169 |
| ApoI | RAATTY | 3 cut(s) | 144, 156, 290 |
| AspA2I | CCTAGG | 1 cut(s) | 106 |
| AspS9I | GGNCC | 1 cut(s) | 1204 |
| AsuHPI | GGTGA | 4 cut(s) | 46, 152, 388, 757 |
| AsuII | TTCGAA | 2 cut(s) | 446, 723 |
| AvaII | GGWCC | 1 cut(s) | 1204 |
| AvrII | CCTAGG | 1 cut(s) | 106 |
| BalI | TGGCCA | 2 cut(s) | 1046, 1142 |
| BanI | GGYRCC | 1 cut(s) | 1268 |
| BanII | GRGCYC | 1 cut(s) | 831 |
| BbsI | GAAGAC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 2 cut(s) | 831, 1461 |
| BbvCI | CCTCAGC | 1 cut(s) | 1237 |
| BbvI | GCAGC | 3 cut(s) | 576, 604, 1156 |
| BccI | CCATC | 2 cut(s) | 357, 609 |
| BceAI | ACGGC | 1 cut(s) | 649 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1354, 1388 |
| BciVI | GTATCC | 1 cut(s) | 351 |
| BclI | TGATCA | 1 cut(s) | 283 |
| BcoDI | GTCTC | 3 cut(s) | 220, 545, 1422 |
| BfaI | CTAG | 4 cut(s) | 107, 389, 507, 744 |
| BfmI | CTRYAG | 3 cut(s) | 590, 882, 1242 |
| BfuAI | ACCTGC | 2 cut(s) | 594, 889 |
| BfuI | GTATCC | 1 cut(s) | 351 |
| BglII | AGATCT | 1 cut(s) | 871 |
| BisI | GCNGC | 5 cut(s) | 345, 590, 593, 1167, 1170 |
| BlnI | CCTAGG | 1 cut(s) | 106 |
| BlsI | GCNGC | 5 cut(s) | 346, 591, 594, 1168, 1171 |
| Bme18I | GGWCC | 1 cut(s) | 1204 |
| BmgBI | CACGTC | 1 cut(s) | 649 |
| BmgT120I | GGNCC | 1 cut(s) | 1204 |
| BmiI | GGNNCC | 1 cut(s) | 1270 |
| BmsI | GCATC | 4 cut(s) | 308, 498, 790, 1441 |
| BpiI | GAAGAC | 1 cut(s) | 375 |
| BpmI | CTGGAG | 1 cut(s) | 845 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1237 |
| Bpu14I | TTCGAA | 2 cut(s) | 446, 723 |
| BpuEI | CTTGAG | 3 cut(s) | 328, 431, 1445 |
| BsaHI | GRCGYC | 1 cut(s) | 858 |
| BsaJI | CCNNGG | 4 cut(s) | 106, 1152, 1364, 1404 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 354, 607, 744, 1134, 1189 |
| Bse1I | ACTGG | 1 cut(s) | 828 |
| Bse3DI | GCAATG | 1 cut(s) | 1370 |
| BseDI | CCNNGG | 4 cut(s) | 106, 1152, 1364, 1404 |
| BseGI | GGATG | 3 cut(s) | 1039, 1198, 1414 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 354, 607, 744, 1134, 1189 |
| BseMI | GCAATG | 1 cut(s) | 1370 |
| BseMII | CTCAG | 2 cut(s) | 215, 1251 |
| BseNI | ACTGG | 1 cut(s) | 828 |
| BseRI | GAGGAG | 1 cut(s) | 1337 |
| BseXI | GCAGC | 3 cut(s) | 576, 604, 1156 |
| BseYI | CCCAGC | 1 cut(s) | 702 |
| Bsh1236I | CGCG | 1 cut(s) | 537 |
| BshFI | GGCC | 3 cut(s) | 1046, 1142, 1182 |
| BshNI | GGYRCC | 1 cut(s) | 1268 |
| BsiHKAI | GWGCWC | 2 cut(s) | 831, 1461 |
| BslFI | GGGAC | 1 cut(s) | 869 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 354, 607, 744, 1134, 1189 |
| BsmAI | GTCTC | 3 cut(s) | 220, 545, 1422 |
| BsmBI | CGTCTC | 1 cut(s) | 1422 |
| BsmFI | GGGAC | 1 cut(s) | 869 |
| BsmI | GAATGC | 1 cut(s) | 48 |
| BsnI | GGCC | 3 cut(s) | 1046, 1142, 1182 |
| Bsp119I | TTCGAA | 2 cut(s) | 446, 723 |
| Bsp1286I | GDGCHC | 2 cut(s) | 831, 1461 |
| Bsp143I | GATC | 3 cut(s) | 283, 417, 871 |
| BspACI | CCGC | 5 cut(s) | 345, 768, 1166, 1172, 1202 |
| BspANI | GGCC | 3 cut(s) | 1046, 1142, 1182 |
| BspCNI | CTCAG | 2 cut(s) | 216, 1250 |
| BspFNI | CGCG | 1 cut(s) | 537 |
| BspHI | TCATGA | 2 cut(s) | 529, 1447 |
| BspLI | GGNNCC | 1 cut(s) | 1270 |
| BspMAI | CTGCAG | 2 cut(s) | 594, 886 |
| BspMI | ACCTGC | 2 cut(s) | 594, 889 |
| BspT104I | TTCGAA | 2 cut(s) | 446, 723 |
| BspT107I | GGYRCC | 1 cut(s) | 1268 |
| BsrDI | GCAATG | 1 cut(s) | 1370 |
| BsrI | ACTGG | 1 cut(s) | 828 |
| BssECI | CCNNGG | 4 cut(s) | 106, 1152, 1364, 1404 |
| BssMI | GATC | 3 cut(s) | 283, 417, 871 |
| BssNI | GRCGYC | 1 cut(s) | 858 |
| BssT1I | CCWWGG | 2 cut(s) | 106, 1152 |
| Bst4CI | ACNGT | 3 cut(s) | 428, 915, 1433 |
| Bst6I | CTCTTC | 3 cut(s) | 24, 375, 1449 |
| BstACI | GRCGYC | 1 cut(s) | 858 |
| BstBI | TTCGAA | 2 cut(s) | 446, 723 |
| BstC8I | GCNNGC | 2 cut(s) | 946, 975 |
| BstDEI | CTNAG | 4 cut(s) | 85, 224, 353, 1237 |
| BstDSI | CCRYGG | 1 cut(s) | 1404 |
| BstEII | GGTNACC | 1 cut(s) | 682 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 3 cut(s) | 1039, 1198, 1414 |
| BstFNI | CGCG | 1 cut(s) | 537 |
| BstKTI | GATC | 3 cut(s) | 286, 420, 874 |
| BstMAI | GTCTC | 3 cut(s) | 220, 545, 1422 |
| BstMBI | GATC | 3 cut(s) | 283, 417, 871 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1163 |
| BstNSI | RCATGY | 2 cut(s) | 14, 1229 |
| BstPI | GGTNACC | 1 cut(s) | 682 |
| BstSFI | CTRYAG | 3 cut(s) | 590, 882, 1242 |
| BstUI | CGCG | 1 cut(s) | 537 |
| BstV1I | GCAGC | 3 cut(s) | 576, 604, 1156 |
| BstV2I | GAAGAC | 1 cut(s) | 375 |
| BstX2I | RGATCY | 1 cut(s) | 871 |
| BstYI | RGATCY | 1 cut(s) | 871 |
| BsuI | GTATCC | 1 cut(s) | 351 |
| BsuRI | GGCC | 3 cut(s) | 1046, 1142, 1182 |
| BtgI | CCRYGG | 1 cut(s) | 1404 |
| BtrI | CACGTC | 1 cut(s) | 649 |
| BtsCI | GGATG | 3 cut(s) | 1039, 1198, 1414 |
| BtsIMutI | CAGTG | 3 cut(s) | 720, 911, 927 |
| BveI | ACCTGC | 2 cut(s) | 594, 889 |
| Cac8I | GCNNGC | 2 cut(s) | 946, 975 |
| CciI | TCATGA | 2 cut(s) | 529, 1447 |
| Cfr13I | GGNCC | 1 cut(s) | 1204 |
| CseI | GACGC | 1 cut(s) | 1325 |
| Csp6I | GTAC | 3 cut(s) | 268, 718, 1423 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 391, 426 |
| CviQI | GTAC | 3 cut(s) | 268, 718, 1423 |
| DdeI | CTNAG | 4 cut(s) | 85, 224, 353, 1237 |
| DpnI | GATC | 3 cut(s) | 285, 419, 873 |
| DpnII | GATC | 3 cut(s) | 283, 417, 871 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 863 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 863 |
| EaeI | YGGCCR | 3 cut(s) | 1044, 1140, 1180 |
| Eam1104I | CTCTTC | 3 cut(s) | 24, 375, 1449 |
| EarI | CTCTTC | 3 cut(s) | 24, 375, 1449 |
| Ecl136II | GAGCTC | 1 cut(s) | 829 |
| Eco130I | CCWWGG | 2 cut(s) | 106, 1152 |
| Eco24I | GRGCYC | 1 cut(s) | 831 |
| Eco47I | GGWCC | 1 cut(s) | 1204 |
| Eco53kI | GAGCTC | 1 cut(s) | 829 |
| Eco91I | GGTNACC | 1 cut(s) | 682 |
| EcoICRI | GAGCTC | 1 cut(s) | 829 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 742 |
| EcoO65I | GGTNACC | 1 cut(s) | 682 |
| EcoT14I | CCWWGG | 2 cut(s) | 106, 1152 |
| EcoT38I | GRGCYC | 1 cut(s) | 831 |
| ErhI | CCWWGG | 2 cut(s) | 106, 1152 |
| Esp3I | CGTCTC | 1 cut(s) | 1422 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 177, 209, 360, 392 |
| FaqI | GGGAC | 1 cut(s) | 869 |
| FbaI | TGATCA | 1 cut(s) | 283 |
| FblI | GTMKAC | 1 cut(s) | 924 |
| Fnu4HI | GCNGC | 5 cut(s) | 345, 590, 593, 1167, 1170 |
| FokI | GGATG | 3 cut(s) | 1046, 1205, 1421 |
| FriOI | GRGCYC | 1 cut(s) | 831 |
| Fsp4HI | GCNGC | 5 cut(s) | 345, 590, 593, 1167, 1170 |
| FspBI | CTAG | 4 cut(s) | 107, 389, 507, 744 |
| GluI | GCNGC | 5 cut(s) | 345, 590, 593, 1167, 1170 |
| GsaI | CCCAGC | 1 cut(s) | 706 |
| GsuI | CTGGAG | 1 cut(s) | 845 |
| HaeIII | GGCC | 3 cut(s) | 1046, 1142, 1182 |
| HgaI | GACGC | 1 cut(s) | 1325 |
| Hin1I | GRCGYC | 1 cut(s) | 858 |
| HindIII | AAGCTT | 3 cut(s) | 331, 690, 942 |
| HinfI | GANTC | 7 cut(s) | 53, 413, 539, 553, 1124, 1185, 1337 |
| HphI | GGTGA | 4 cut(s) | 46, 152, 388, 757 |
| Hpy166II | GTNNAC | 2 cut(s) | 718, 925 |
| Hpy188I | TCNGA | 3 cut(s) | 17, 483, 1365 |
| Hpy188III | TCNNGA | 6 cut(s) | 307, 321, 410, 530, 559, 1448 |
| Hpy8I | GTNNAC | 2 cut(s) | 718, 925 |
| HpyAV | CCTTC | 6 cut(s) | 67, 78, 478, 631, 1138, 1318 |
| HpyCH4III | ACNGT | 3 cut(s) | 428, 915, 1433 |
| HpyCH4IV | ACGT | 2 cut(s) | 648, 858 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 569, 592, 759, 884, 948, 1009 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1163 |
| HpyF3I | CTNAG | 4 cut(s) | 85, 224, 353, 1237 |
| HpySE526I | ACGT | 2 cut(s) | 648, 858 |
| Hsp92I | GRCGYC | 1 cut(s) | 858 |
| Ksp22I | TGATCA | 1 cut(s) | 283 |
| Kzo9I | GATC | 3 cut(s) | 283, 417, 871 |
| LmnI | GCTCC | 1 cut(s) | 826 |
| LpnPI | CCDG | 9 cut(s) | 306, 347, 572, 599, 688, 809, 894, 1025, 1050 |
| Lsp1109I | GCAGC | 3 cut(s) | 576, 604, 1156 |
| LweI | GCATC | 4 cut(s) | 308, 498, 790, 1441 |
| MaeI | CTAG | 4 cut(s) | 107, 389, 507, 744 |
| MaeII | ACGT | 2 cut(s) | 648, 858 |
| MaeIII | GTNAC | 6 cut(s) | 236, 682, 763, 876, 1313, 1433 |
| MalI | GATC | 3 cut(s) | 285, 419, 873 |
| MboI | GATC | 3 cut(s) | 283, 417, 871 |
| MboII | GAAGA | 8 cut(s) | 41, 197, 380, 392, 830, 1289, 1292, 1436 |
| MfeI | CAATTG | 1 cut(s) | 77 |
| MflI | RGATCY | 1 cut(s) | 871 |
| MhlI | GDGCHC | 2 cut(s) | 831, 1461 |
| MlsI | TGGCCA | 2 cut(s) | 1046, 1142 |
| MluNI | TGGCCA | 2 cut(s) | 1046, 1142 |
| MlyI | GAGTC | 5 cut(s) | 47, 422, 547, 1118, 1179 |
| MmeI | TCCRAC | 2 cut(s) | 555, 1078 |
| Mox20I | TGGCCA | 2 cut(s) | 1046, 1142 |
| MscI | TGGCCA | 2 cut(s) | 1046, 1142 |
| MseI | TTAA | 7 cut(s) | 294, 329, 431, 467, 1055, 1331, 1389 |
| MslI | CAYNNNNRTG | 3 cut(s) | 9, 497, 770 |
| Msp20I | TGGCCA | 2 cut(s) | 1046, 1142 |
| MspA1I | CMGCKG | 1 cut(s) | 1241 |
| MunI | CAATTG | 1 cut(s) | 77 |
| Mva1269I | GAATGC | 1 cut(s) | 48 |
| MvnI | CGCG | 1 cut(s) | 537 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1163 |
| NdeII | GATC | 3 cut(s) | 283, 417, 871 |
| NlaIV | GGNNCC | 1 cut(s) | 1270 |
| NmuCI | GTSAC | 2 cut(s) | 763, 1313 |
| NspI | RCATGY | 2 cut(s) | 14, 1229 |
| NspV | TTCGAA | 2 cut(s) | 446, 723 |
| OliI | CACNNNNGTG | 1 cut(s) | 497 |
| PagI | TCATGA | 2 cut(s) | 529, 1447 |
| PciI | ACATGT | 2 cut(s) | 10, 1225 |
| PctI | GAATGC | 1 cut(s) | 48 |
| PfeI | GAWTC | 2 cut(s) | 539, 1337 |
| PkrI | GCNGC | 5 cut(s) | 346, 591, 594, 1168, 1171 |
| PleI | GAGTC | 5 cut(s) | 47, 421, 547, 1118, 1179 |
| PpsI | GAGTC | 5 cut(s) | 47, 421, 547, 1118, 1179 |
| PscI | ACATGT | 2 cut(s) | 10, 1225 |
| PsiI | TTATAA | 3 cut(s) | 671, 906, 1232 |
| Psp124BI | GAGCTC | 1 cut(s) | 831 |
| PspEI | GGTNACC | 1 cut(s) | 682 |
| PspFI | CCCAGC | 1 cut(s) | 702 |
| PspN4I | GGNNCC | 1 cut(s) | 1270 |
| PspPI | GGNCC | 1 cut(s) | 1204 |
| PstI | CTGCAG | 2 cut(s) | 594, 886 |
| PsuI | RGATCY | 1 cut(s) | 871 |
| PvuII | CAGCTG | 1 cut(s) | 1241 |
| RsaI | GTAC | 3 cut(s) | 269, 719, 1424 |
| RsaNI | GTAC | 3 cut(s) | 268, 718, 1423 |
| RseI | CAYNNNNRTG | 3 cut(s) | 9, 497, 770 |
| SacI | GAGCTC | 1 cut(s) | 831 |
| SaqAI | TTAA | 7 cut(s) | 294, 329, 431, 467, 1055, 1331, 1389 |
| SatI | GCNGC | 5 cut(s) | 345, 590, 593, 1167, 1170 |
| Sau3AI | GATC | 3 cut(s) | 283, 417, 871 |
| Sau96I | GGNCC | 1 cut(s) | 1204 |
| SchI | GAGTC | 5 cut(s) | 47, 422, 547, 1118, 1179 |
| SduI | GDGCHC | 2 cut(s) | 831, 1461 |
| SfaNI | GCATC | 4 cut(s) | 308, 498, 790, 1441 |
| SfcI | CTRYAG | 3 cut(s) | 590, 882, 1242 |
| SfuI | TTCGAA | 2 cut(s) | 446, 723 |
| SinI | GGWCC | 1 cut(s) | 1204 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 9, 497, 770 |
| SmlI | CTYRAG | 3 cut(s) | 307, 410, 1460 |
| SmoI | CTYRAG | 3 cut(s) | 307, 410, 1460 |
| SsiI | CCGC | 5 cut(s) | 345, 768, 1166, 1172, 1202 |
| SspI | AATATT | 1 cut(s) | 734 |
| SspMI | CTAG | 4 cut(s) | 107, 389, 507, 744 |
| SstI | GAGCTC | 1 cut(s) | 831 |
| StyI | CCWWGG | 2 cut(s) | 106, 1152 |
| TaaI | ACNGT | 3 cut(s) | 428, 915, 1433 |
| TaiI | ACGT | 2 cut(s) | 651, 861 |
| TaqI | TCGA | 7 cut(s) | 217, 416, 446, 723, 1131, 1293, 1381 |
| TatI | WGTACW | 2 cut(s) | 267, 717 |
| TauI | GCSGC | 2 cut(s) | 347, 1169 |
| TfiI | GAWTC | 2 cut(s) | 539, 1337 |
| Tru1I | TTAA | 7 cut(s) | 294, 329, 431, 467, 1055, 1331, 1389 |
| Tru9I | TTAA | 7 cut(s) | 294, 329, 431, 467, 1055, 1331, 1389 |
| TscAI | CASTG | 3 cut(s) | 720, 918, 934 |
| TseFI | GTSAC | 2 cut(s) | 763, 1313 |
| TseI | GCWGC | 3 cut(s) | 589, 592, 1169 |
| Tsp45I | GTSAC | 2 cut(s) | 763, 1313 |
| TspGWI | ACGGA | 3 cut(s) | 200, 1421, 1440 |
| TspRI | CASTG | 3 cut(s) | 720, 918, 934 |
| VpaK11BI | GGWCC | 1 cut(s) | 1204 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 742 |
| XapI | RAATTY | 3 cut(s) | 144, 156, 290 |
| XceI | RCATGY | 2 cut(s) | 14, 1229 |
| XmaJI | CCTAGG | 1 cut(s) | 106 |
| XmiI | GTMKAC | 1 cut(s) | 924 |
| XspI | CTAG | 4 cut(s) | 107, 389, 507, 744 |
| ZraI | GACGTC | 1 cut(s) | 859 |