(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 30 - 202 | 3.8e-60 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 259 - 499 | 4.5e-93 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 300 - 499 | 1e-59 | Terpene synthase family 2, C-terminal metal binding |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 378 |
| Acc65I | GGTACC | 1 cut(s) | 1436 |
| AccB1I | GGYRCC | 1 cut(s) | 1436 |
| AclI | AACGTT | 1 cut(s) | 381 |
| AclWI | GGATC | 3 cut(s) | 185, 198, 1004 |
| AcoI | YGGCCR | 1 cut(s) | 1305 |
| AcsI | RAATTY | 4 cut(s) | 282, 294, 428, 1551 |
| AcuI | CTGAAG | 1 cut(s) | 996 |
| AdeI | CACNNNGTG | 1 cut(s) | 768 |
| AfaI | GTAC | 3 cut(s) | 857, 1438, 1592 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 745, 882, 1019, 1299, 1354 |
| AflII | CTTAAG | 1 cut(s) | 491 |
| AjiI | CACGTC | 1 cut(s) | 151 |
| AjnI | CCWGG | 2 cut(s) | 780, 1018 |
| Alw21I | GWGCWC | 2 cut(s) | 969, 1629 |
| Alw26I | GTCTC | 2 cut(s) | 358, 807 |
| AlwI | GGATC | 3 cut(s) | 185, 198, 1004 |
| AoxI | GGCC | 4 cut(s) | 35, 1209, 1305, 1535 |
| ApeKI | GCWGC | 4 cut(s) | 145, 437, 799, 1331 |
| ApoI | RAATTY | 4 cut(s) | 282, 294, 428, 1551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1361, 1393 |
| AseI | ATTAAT | 1 cut(s) | 1220 |
| Asp718I | GGTACC | 1 cut(s) | 1436 |
| AspA2I | CCTAGG | 1 cut(s) | 244 |
| AspS9I | GGNCC | 3 cut(s) | 778, 1210, 1369 |
| AsuHPI | GGTGA | 3 cut(s) | 107, 184, 290 |
| AsuII | TTCGAA | 1 cut(s) | 861 |
| AvaII | GGWCC | 2 cut(s) | 778, 1369 |
| AvrII | CCTAGG | 1 cut(s) | 244 |
| BalI | TGGCCA | 1 cut(s) | 1307 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 1436 |
| BanII | GRGCYC | 1 cut(s) | 969 |
| BbsI | GAAGAC | 1 cut(s) | 513 |
| Bbv12I | GWGCWC | 2 cut(s) | 969, 1629 |
| BbvCI | CCTCAGC | 1 cut(s) | 1405 |
| BbvI | GCAGC | 4 cut(s) | 157, 449, 786, 1343 |
| BccI | CCATC | 4 cut(s) | 272, 495, 747, 1592 |
| BceAI | ACGGC | 1 cut(s) | 787 |
| BciT130I | CCWGG | 2 cut(s) | 782, 1020 |
| BclI | TGATCA | 2 cut(s) | 97, 421 |
| BcoDI | GTCTC | 2 cut(s) | 358, 807 |
| BfaI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| BfmI | CTRYAG | 1 cut(s) | 1410 |
| BfrI | CTTAAG | 1 cut(s) | 491 |
| BisI | GCNGC | 4 cut(s) | 146, 438, 800, 1332 |
| BlnI | CCTAGG | 1 cut(s) | 244 |
| BlsI | GCNGC | 4 cut(s) | 147, 439, 801, 1333 |
| Bme1390I | CCNGG | 2 cut(s) | 782, 1020 |
| Bme18I | GGWCC | 2 cut(s) | 778, 1369 |
| BmgBI | CACGTC | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 3 cut(s) | 778, 1210, 1369 |
| BmiI | GGNNCC | 2 cut(s) | 192, 1438 |
| BmrFI | CCNGG | 2 cut(s) | 782, 1020 |
| BmsI | GCATC | 1 cut(s) | 29 |
| BpiI | GAAGAC | 1 cut(s) | 513 |
| BpmI | CTGGAG | 1 cut(s) | 713 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1405 |
| Bpu14I | TTCGAA | 1 cut(s) | 861 |
| BpuEI | CTTGAG | 4 cut(s) | 9, 161, 569, 1613 |
| Bsa29I | ATCGAT | 2 cut(s) | 917, 924 |
| BsaJI | CCNNGG | 6 cut(s) | 244, 632, 943, 1317, 1532, 1572 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1082, 1112 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 745, 882, 1019, 1299, 1354 |
| BseBI | CCWGG | 2 cut(s) | 782, 1020 |
| BseCI | ATCGAT | 2 cut(s) | 917, 924 |
| BseDI | CCNNGG | 6 cut(s) | 244, 632, 943, 1317, 1532, 1572 |
| BseGI | GGATG | 4 cut(s) | 790, 1204, 1363, 1582 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 745, 882, 1019, 1299, 1354 |
| BseMII | CTCAG | 2 cut(s) | 437, 1419 |
| BseXI | GCAGC | 4 cut(s) | 157, 449, 786, 1343 |
| BshFI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BshNI | GGYRCC | 1 cut(s) | 1436 |
| BshVI | ATCGAT | 2 cut(s) | 917, 924 |
| BsiHKAI | GWGCWC | 2 cut(s) | 969, 1629 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 745, 882, 1019, 1299, 1354 |
| BsmAI | GTCTC | 2 cut(s) | 358, 807 |
| BsmI | GAATGC | 1 cut(s) | 627 |
| BsnI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| Bsp119I | TTCGAA | 1 cut(s) | 861 |
| Bsp1286I | GDGCHC | 2 cut(s) | 969, 1629 |
| Bsp143I | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| Bsp19I | CCATGG | 1 cut(s) | 1572 |
| BspANI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BspCNI | CTCAG | 2 cut(s) | 438, 1418 |
| BspDI | ATCGAT | 2 cut(s) | 917, 924 |
| BspHI | TCATGA | 1 cut(s) | 1615 |
| BspLI | GGNNCC | 2 cut(s) | 192, 1438 |
| BspPI | GGATC | 3 cut(s) | 185, 198, 1004 |
| BspQI | GCTCTTC | 2 cut(s) | 447, 951 |
| BspT104I | TTCGAA | 1 cut(s) | 861 |
| BspT107I | GGYRCC | 1 cut(s) | 1436 |
| BspTI | CTTAAG | 1 cut(s) | 491 |
| BssECI | CCNNGG | 6 cut(s) | 244, 632, 943, 1317, 1532, 1572 |
| BssMI | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| BssT1I | CCWWGG | 4 cut(s) | 244, 943, 1317, 1572 |
| Bst2UI | CCWGG | 2 cut(s) | 782, 1020 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 566 |
| Bst6I | CTCTTC | 5 cut(s) | 162, 316, 447, 513, 951 |
| BstAFI | CTTAAG | 1 cut(s) | 491 |
| BstBI | TTCGAA | 1 cut(s) | 861 |
| BstC8I | GCNNGC | 2 cut(s) | 182, 1140 |
| BstDEI | CTNAG | 2 cut(s) | 446, 1405 |
| BstDSI | CCRYGG | 1 cut(s) | 1572 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 880 |
| BstF5I | GGATG | 4 cut(s) | 790, 1204, 1363, 1582 |
| BstKTI | GATC | 5 cut(s) | 100, 193, 424, 921, 1012 |
| BstMAI | GTCTC | 2 cut(s) | 358, 807 |
| BstMBI | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| BstNI | CCWGG | 2 cut(s) | 782, 1020 |
| BstNSI | RCATGY | 2 cut(s) | 184, 1569 |
| BstSCI | CCNGG | 2 cut(s) | 780, 1018 |
| BstSFI | CTRYAG | 1 cut(s) | 1410 |
| BstV1I | GCAGC | 4 cut(s) | 157, 449, 786, 1343 |
| BstV2I | GAAGAC | 1 cut(s) | 513 |
| BstX2I | RGATCY | 2 cut(s) | 190, 1009 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 90 |
| BstYI | RGATCY | 2 cut(s) | 190, 1009 |
| Bsu15I | ATCGAT | 2 cut(s) | 917, 924 |
| BsuRI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BsuTUI | ATCGAT | 2 cut(s) | 917, 924 |
| BtgI | CCRYGG | 1 cut(s) | 1572 |
| BtrI | CACGTC | 1 cut(s) | 151 |
| BtsCI | GGATG | 4 cut(s) | 790, 1204, 1363, 1582 |
| BtsI | GCAGTG | 1 cut(s) | 1092 |
| BtsIMutI | CAGTG | 2 cut(s) | 858, 1092 |
| Cac8I | GCNNGC | 2 cut(s) | 182, 1140 |
| CciI | TCATGA | 1 cut(s) | 1615 |
| Cfr13I | GGNCC | 3 cut(s) | 778, 1210, 1369 |
| ClaI | ATCGAT | 2 cut(s) | 917, 924 |
| CseI | GACGC | 1 cut(s) | 1493 |
| CsiI | ACCWGGT | 1 cut(s) | 1018 |
| Csp6I | GTAC | 3 cut(s) | 856, 1437, 1591 |
| CviQI | GTAC | 3 cut(s) | 856, 1437, 1591 |
| DdeI | CTNAG | 2 cut(s) | 446, 1405 |
| DpnI | GATC | 5 cut(s) | 99, 192, 423, 920, 1011 |
| DpnII | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| DraIII | CACNNNGTG | 1 cut(s) | 768 |
| EaeI | YGGCCR | 1 cut(s) | 1305 |
| Eam1104I | CTCTTC | 5 cut(s) | 162, 316, 447, 513, 951 |
| EarI | CTCTTC | 5 cut(s) | 162, 316, 447, 513, 951 |
| Ecl136II | GAGCTC | 1 cut(s) | 967 |
| Eco130I | CCWWGG | 4 cut(s) | 244, 943, 1317, 1572 |
| Eco24I | GRGCYC | 1 cut(s) | 969 |
| Eco32I | GATATC | 2 cut(s) | 394, 997 |
| Eco47I | GGWCC | 2 cut(s) | 778, 1369 |
| Eco53kI | GAGCTC | 1 cut(s) | 967 |
| Eco57I | CTGAAG | 1 cut(s) | 996 |
| EcoICRI | GAGCTC | 1 cut(s) | 967 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 880 |
| EcoO109I | RGGNCCY | 1 cut(s) | 778 |
| EcoRI | GAATTC | 1 cut(s) | 1551 |
| EcoRII | CCWGG | 2 cut(s) | 780, 1018 |
| EcoRV | GATATC | 2 cut(s) | 394, 997 |
| EcoT14I | CCWWGG | 4 cut(s) | 244, 943, 1317, 1572 |
| EcoT38I | GRGCYC | 1 cut(s) | 969 |
| ErhI | CCWWGG | 4 cut(s) | 244, 943, 1317, 1572 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 936, 968, 1065, 1097 |
| FbaI | TGATCA | 2 cut(s) | 97, 421 |
| Fnu4HI | GCNGC | 4 cut(s) | 146, 438, 800, 1332 |
| FokI | GGATG | 4 cut(s) | 797, 1211, 1370, 1589 |
| FriOI | GRGCYC | 1 cut(s) | 969 |
| Fsp4HI | GCNGC | 4 cut(s) | 146, 438, 800, 1332 |
| FspBI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| GluI | GCNGC | 4 cut(s) | 146, 438, 800, 1332 |
| GsuI | CTGGAG | 1 cut(s) | 713 |
| HaeIII | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| HgaI | GACGC | 1 cut(s) | 1493 |
| HincII | GTYRAC | 1 cut(s) | 660 |
| HindII | GTYRAC | 1 cut(s) | 660 |
| HindIII | AAGCTT | 1 cut(s) | 12 |
| HinfI | GANTC | 5 cut(s) | 551, 1107, 1289, 1350, 1505 |
| HphI | GGTGA | 3 cut(s) | 107, 184, 290 |
| Hpy166II | GTNNAC | 4 cut(s) | 130, 660, 856, 1369 |
| Hpy188I | TCNGA | 6 cut(s) | 155, 426, 447, 633, 1463, 1533 |
| Hpy188III | TCNNGA | 6 cut(s) | 459, 548, 697, 730, 841, 1616 |
| Hpy8I | GTNNAC | 4 cut(s) | 130, 660, 856, 1369 |
| HpyAV | CCTTC | 9 cut(s) | 75, 216, 407, 585, 616, 769, 1303, 1380, 1526 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 566 |
| HpyCH4IV | ACGT | 2 cut(s) | 150, 381 |
| HpyCH4V | TGCA | 7 cut(s) | 707, 809, 897, 1085, 1174, 1565, 1583 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| HpyF3I | CTNAG | 2 cut(s) | 446, 1405 |
| HpySE526I | ACGT | 2 cut(s) | 150, 381 |
| KpnI | GGTACC | 1 cut(s) | 1440 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 421 |
| Kzo9I | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| LguI | GCTCTTC | 2 cut(s) | 447, 951 |
| Lsp1109I | GCAGC | 4 cut(s) | 157, 449, 786, 1343 |
| LweI | GCATC | 1 cut(s) | 29 |
| MabI | ACCWGGT | 1 cut(s) | 1018 |
| MaeI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| MaeII | ACGT | 2 cut(s) | 150, 381 |
| MaeIII | GTNAC | 5 cut(s) | 901, 1148, 1399, 1481, 1601 |
| MalI | GATC | 5 cut(s) | 99, 192, 423, 920, 1011 |
| MboI | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| MflI | RGATCY | 2 cut(s) | 190, 1009 |
| MhlI | GDGCHC | 2 cut(s) | 969, 1629 |
| MlsI | TGGCCA | 1 cut(s) | 1307 |
| MluCI | AATT | 7 cut(s) | 73, 282, 294, 428, 1068, 1221, 1551 |
| MluNI | TGGCCA | 1 cut(s) | 1307 |
| MlyI | GAGTC | 2 cut(s) | 560, 1344 |
| MmeI | TCCRAC | 2 cut(s) | 693, 1243 |
| Mox20I | TGGCCA | 1 cut(s) | 1307 |
| MscI | TGGCCA | 1 cut(s) | 1307 |
| MseI | TTAA | 9 cut(s) | 57, 198, 432, 492, 569, 605, 984, 1220, 1557 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| Msp20I | TGGCCA | 1 cut(s) | 1307 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| MspCI | CTTAAG | 1 cut(s) | 491 |
| MspR9I | CCNGG | 2 cut(s) | 782, 1020 |
| Mva1269I | GAATGC | 1 cut(s) | 627 |
| MvaI | CCWGG | 2 cut(s) | 782, 1020 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| NcoI | CCATGG | 1 cut(s) | 1572 |
| NdeII | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| NlaIV | GGNNCC | 2 cut(s) | 192, 1438 |
| NmuCI | GTSAC | 2 cut(s) | 901, 1481 |
| NspI | RCATGY | 2 cut(s) | 184, 1569 |
| NspV | TTCGAA | 1 cut(s) | 861 |
| PaeI | GCATGC | 1 cut(s) | 184 |
| PagI | TCATGA | 1 cut(s) | 1615 |
| PciSI | GCTCTTC | 2 cut(s) | 447, 951 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 387, 1659 |
| PctI | GAATGC | 1 cut(s) | 627 |
| PfeI | GAWTC | 3 cut(s) | 1107, 1289, 1505 |
| PflFI | GACNNNGTC | 1 cut(s) | 847 |
| PkrI | GCNGC | 4 cut(s) | 147, 439, 801, 1333 |
| PleI | GAGTC | 2 cut(s) | 559, 1344 |
| PpsI | GAGTC | 2 cut(s) | 559, 1344 |
| PpuMI | RGGWCCY | 1 cut(s) | 778 |
| PshBI | ATTAAT | 1 cut(s) | 1220 |
| PsiI | TTATAA | 1 cut(s) | 378 |
| Psp124BI | GAGCTC | 1 cut(s) | 969 |
| Psp1406I | AACGTT | 1 cut(s) | 381 |
| Psp5II | RGGWCCY | 1 cut(s) | 778 |
| Psp6I | CCWGG | 2 cut(s) | 780, 1018 |
| PspGI | CCWGG | 2 cut(s) | 780, 1018 |
| PspN4I | GGNNCC | 2 cut(s) | 192, 1438 |
| PspPI | GGNCC | 3 cut(s) | 778, 1210, 1369 |
| PspPPI | RGGWCCY | 1 cut(s) | 778 |
| PsuI | RGATCY | 2 cut(s) | 190, 1009 |
| PsyI | GACNNNGTC | 1 cut(s) | 847 |
| PvuII | CAGCTG | 1 cut(s) | 1409 |
| RsaI | GTAC | 3 cut(s) | 857, 1438, 1592 |
| RsaNI | GTAC | 3 cut(s) | 856, 1437, 1591 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| SacI | GAGCTC | 1 cut(s) | 969 |
| SapI | GCTCTTC | 2 cut(s) | 447, 951 |
| SaqAI | TTAA | 9 cut(s) | 57, 198, 432, 492, 569, 605, 984, 1220, 1557 |
| SatI | GCNGC | 4 cut(s) | 146, 438, 800, 1332 |
| Sau3AI | GATC | 5 cut(s) | 97, 190, 421, 918, 1009 |
| Sau96I | GGNCC | 3 cut(s) | 778, 1210, 1369 |
| SchI | GAGTC | 2 cut(s) | 560, 1344 |
| ScrFI | CCNGG | 2 cut(s) | 782, 1020 |
| SduI | GDGCHC | 2 cut(s) | 969, 1629 |
| SexAI | ACCWGGT | 1 cut(s) | 1018 |
| SfaNI | GCATC | 1 cut(s) | 29 |
| SfcI | CTRYAG | 1 cut(s) | 1410 |
| SfuI | TTCGAA | 1 cut(s) | 861 |
| SinI | GGWCC | 2 cut(s) | 778, 1369 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| SmlI | CTYRAG | 5 cut(s) | 24, 140, 491, 548, 1628 |
| SmoI | CTYRAG | 5 cut(s) | 24, 140, 491, 548, 1628 |
| SphI | GCATGC | 1 cut(s) | 184 |
| Sse9I | AATT | 7 cut(s) | 73, 282, 294, 428, 1068, 1221, 1551 |
| SspMI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| SstI | GAGCTC | 1 cut(s) | 969 |
| StyD4I | CCNGG | 2 cut(s) | 780, 1018 |
| StyI | CCWWGG | 4 cut(s) | 244, 943, 1317, 1572 |
| TaaI | ACNGT | 2 cut(s) | 46, 566 |
| TaiI | ACGT | 2 cut(s) | 153, 384 |
| TaqI | TCGA | 6 cut(s) | 516, 861, 917, 924, 1105, 1296 |
| TasI | AATT | 7 cut(s) | 73, 282, 294, 428, 1068, 1221, 1551 |
| TatI | WGTACW | 1 cut(s) | 855 |
| TfiI | GAWTC | 3 cut(s) | 1107, 1289, 1505 |
| Tru1I | TTAA | 9 cut(s) | 57, 198, 432, 492, 569, 605, 984, 1220, 1557 |
| Tru9I | TTAA | 9 cut(s) | 57, 198, 432, 492, 569, 605, 984, 1220, 1557 |
| TscAI | CASTG | 2 cut(s) | 858, 1092 |
| TseFI | GTSAC | 2 cut(s) | 901, 1481 |
| TseI | GCWGC | 4 cut(s) | 145, 437, 799, 1331 |
| Tsp45I | GTSAC | 2 cut(s) | 901, 1481 |
| TspDTI | ATGAA | 8 cut(s) | 375, 492, 826, 1043, 1145, 1215, 1439, 1627 |
| TspGWI | ACGGA | 4 cut(s) | 137, 338, 989, 1651 |
| TspRI | CASTG | 2 cut(s) | 858, 1092 |
| Tth111I | GACNNNGTC | 1 cut(s) | 847 |
| Vha464I | CTTAAG | 1 cut(s) | 491 |
| VpaK11BI | GGWCC | 2 cut(s) | 778, 1369 |
| VspI | ATTAAT | 1 cut(s) | 1220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 880 |
| XapI | RAATTY | 4 cut(s) | 282, 294, 428, 1551 |
| XceI | RCATGY | 2 cut(s) | 184, 1569 |
| XmaJI | CCTAGG | 1 cut(s) | 244 |
| XspI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |