RchiOBHm_Chr6g0246011

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000053
Physical Location & Seq
Reverse (-)
1718463 .. 1725387
6925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22051

Sequence Viewer

Length: 1368 bp
ATGTCTCTCCAAATTTTAGCATCTCAAGCTCAAAGGCCAGATACCGTTACTGATGTTAAGCGACCTTCAGCTAATTTTACCCCAAGCATTTGGGGTGATCATTTTCTCTCTTATGCTACCACGGTGAAAAGAATGCTAATAGACTCCTTCAAAAATCCTTCACAACAATTAGACTTGATTGATGACATTCAACGCCTAGGCGTGTCCTATCATTTTGAAAATGAGATTGATAAAATTTTGAAACAAATTCGCCACAACTACTCTTATGGTAGTGAAGATGACCTTTACACTACTGCTCTCCGTTTTCGATTGCTGAGACAACAAGGTTACAATGTTTCATGCGATATGTTCAACAAGTACATGGAAGCAAATGATCAAAAGTTTAAGGCATCTCTCTTGAGTGATGTATCAGGACTATTAAGCTTGTATGAAGCCGCCCATCTTAGGATACGGGGAGAAGACATACTTGAAGAGGCTCTAGCTTTCACCACCACTCATCTTGAGTCGATCAGACACAGTTTAAGCCCTCCACTTTCGAAACAAGTAGCTCATTCCTTAATTCAGCCACTTCGGAAGGGCATCACAAGGGTGGAAGCTAGATATTACTTGTCAATCTATCATGAACGCGATTCACATAACGAGACTCTCCTGACTTTTGCAAAGTTGGATTTCAACCTACTGCAGCAAGTCCATCAAAAGGAACTATGTGAAATTACAAGGTGGTGGAAGGACTTGGACGTGAGAAACACCTTGCCGTTTATAAGAGATAGGGTTACCGAAGCTTACTTCGGCTGGGTTTTGTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACATCATGCAAAGTCACCGCCATGACATCTATTATAGATGACATTTATGATGCCTATGGCACACTTGAAGAACTGGAGCTCTTTACTAAAGCTATTCAAAGGTGGGACATCTGTGCCATAGATCTATTACCTGCAGATTATATGAAAGTCTGTTATAAGGCACTGTTAGAAGTCTACACTGAAATTGAACAAGAGCTTGCAAAGGAAAGAAAGTTGTATCGAATCCACTACGCCAGAGAAGCTATGAAAAAGCAAGCTGAAAATTACTTCCTTGAAGCTAAATGGTTGCACCAGAAACACATACCAACAATGGATGAATACATGGCCGTAGCTTTAATGACCACAGGCTACCCTCTGCTAATAACAACATCTTTTGTTGGAATGGGAGATATTGCTACACAAGACTCCATCGATTGGTTGGCCACTTATCCCAAGGCTGTAAAAGCGGCTGCGGTAGTTGGCCGACTCATGGATGACATAGCGGACCATAAGGTACATACCAATTGCTATATAACAAGTCTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

455

Amino Acids

52.89

Weight (kDa)

6.07

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 40 - 186 3.4e-53 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 243 - 445 1.6e-77 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 284 - 444 2.2e-44 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 761, 996
Acc36I ACCTGC 1 cut(s) 979
AccB7I CCANNNNNTGG 1 cut(s) 1254
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 1 cut(s) 627
AciI CCGC 5 cut(s) 435, 858, 1286, 1292, 1322
AcoI YGGCCR 3 cut(s) 1164, 1260, 1300
AcsI RAATTY 3 cut(s) 12, 234, 246
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 3 cut(s) 359, 809, 1335
AfiI CCNNNNNNNGG 5 cut(s) 444, 697, 834, 1254, 1309
AjiI CACGTC 1 cut(s) 739
AleI CACNNNNGTG 1 cut(s) 587
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 4 cut(s) 9, 310, 635, 1364
AoxI GGCC 4 cut(s) 35, 1164, 1260, 1300
ApeKI GCWGC 2 cut(s) 682, 1289
ApoI RAATTY 3 cut(s) 12, 234, 246
AspA2I CCTAGG 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 1324
AsuHPI GGTGA 4 cut(s) 107, 136, 478, 847
AsuII TTCGAA 2 cut(s) 536, 813
AvaII GGWCC 1 cut(s) 1324
AvrII CCTAGG 1 cut(s) 196
BalI TGGCCA 1 cut(s) 1262
BanII GRGCYC 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 921
BbvI GCAGC 2 cut(s) 694, 1276
BccI CCATC 3 cut(s) 447, 699, 1256
BceAI ACGGC 2 cut(s) 739, 1151
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 2 cut(s) 97, 373
BcoDI GTCTC 4 cut(s) 9, 310, 635, 1364
BfaI CTAG 4 cut(s) 197, 479, 597, 834
BfmI CTRYAG 2 cut(s) 680, 972
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 441
BglII AGATCT 1 cut(s) 961
BisI GCNGC 4 cut(s) 435, 683, 1287, 1290
BlnI CCTAGG 1 cut(s) 196
BlsI GCNGC 4 cut(s) 436, 684, 1288, 1291
Bme18I GGWCC 1 cut(s) 1324
BmgBI CACGTC 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 1324
BmsI GCATC 4 cut(s) 29, 398, 588, 880
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 935
Bpu14I TTCGAA 2 cut(s) 536, 813
BpuEI CTTGAG 3 cut(s) 9, 418, 521
Bsa29I ATCGAT 1 cut(s) 1251
BsaJI CCNNGG 3 cut(s) 120, 196, 1272
Bsc4I CCNNNNNNNGG 5 cut(s) 444, 697, 834, 1254, 1309
Bse1I ACTGG 1 cut(s) 918
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 120, 196, 1272
BseGI GGATG 2 cut(s) 1159, 1318
BseLI CCNNNNNNNGG 5 cut(s) 444, 697, 834, 1254, 1309
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 918
BseXI GCAGC 2 cut(s) 694, 1276
BseYI CCCAGC 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 4 cut(s) 37, 1166, 1262, 1302
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 1 cut(s) 921
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 5 cut(s) 444, 697, 834, 1254, 1309
BsmAI GTCTC 4 cut(s) 9, 310, 635, 1364
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 4 cut(s) 37, 1166, 1262, 1302
Bsp119I TTCGAA 2 cut(s) 536, 813
Bsp1286I GDGCHC 1 cut(s) 921
Bsp143I GATC 4 cut(s) 97, 373, 507, 961
BspACI CCGC 5 cut(s) 435, 858, 1286, 1292, 1322
BspANI GGCC 4 cut(s) 37, 1166, 1262, 1302
BspCNI CTCAG 1 cut(s) 306
BspDI ATCGAT 1 cut(s) 1251
BspFNI CGCG 1 cut(s) 627
BspHI TCATGA 1 cut(s) 619
BspMAI CTGCAG 2 cut(s) 684, 976
BspMI ACCTGC 1 cut(s) 979
BspT104I TTCGAA 2 cut(s) 536, 813
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 3 cut(s) 120, 196, 1272
BssMI GATC 4 cut(s) 97, 373, 507, 961
BssT1I CCWWGG 2 cut(s) 196, 1272
Bst4CI ACNGT 4 cut(s) 46, 124, 518, 1005
Bst6I CTCTTC 1 cut(s) 465
BstBI TTCGAA 2 cut(s) 536, 813
BstC8I GCNNGC 2 cut(s) 1038, 1095
BstDEI CTNAG 2 cut(s) 314, 443
BstDSI CCRYGG 1 cut(s) 120
BstEII GGTNACC 1 cut(s) 772
BstENI CCTNNNNNAGG 1 cut(s) 832
BstF5I GGATG 2 cut(s) 1159, 1318
BstFNI CGCG 1 cut(s) 627
BstKTI GATC 4 cut(s) 100, 376, 510, 964
BstMAI GTCTC 4 cut(s) 9, 310, 635, 1364
BstMBI GATC 4 cut(s) 97, 373, 507, 961
BstMWI GCNNNNNNNGC 3 cut(s) 26, 1079, 1283
BstPI GGTNACC 1 cut(s) 772
BstSFI CTRYAG 2 cut(s) 680, 972
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 694, 1276
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 961
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 961
Bsu15I ATCGAT 1 cut(s) 1251
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 4 cut(s) 37, 1166, 1262, 1302
BsuTUI ATCGAT 1 cut(s) 1251
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 739
BtsCI GGATG 2 cut(s) 1159, 1318
BtsIMutI CAGTG 3 cut(s) 810, 1001, 1017
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 2 cut(s) 1038, 1095
CciI TCATGA 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 1324
ClaI ATCGAT 1 cut(s) 1251
Csp6I GTAC 3 cut(s) 358, 808, 1334
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 7 cut(s) 339, 361, 620, 846, 862, 1162, 1309
CviQI GTAC 3 cut(s) 358, 808, 1334
DdeI CTNAG 2 cut(s) 314, 443
DpnI GATC 4 cut(s) 99, 375, 509, 963
DpnII GATC 4 cut(s) 97, 373, 507, 961
EaeI YGGCCR 3 cut(s) 1164, 1260, 1300
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Ecl136II GAGCTC 1 cut(s) 919
Eco130I CCWWGG 2 cut(s) 196, 1272
Eco24I GRGCYC 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 1324
Eco53kI GAGCTC 1 cut(s) 919
Eco57I CTGAAG 1 cut(s) 51
Eco91I GGTNACC 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 919
EcoNI CCTNNNNNAGG 1 cut(s) 832
EcoO65I GGTNACC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 196, 1272
EcoT38I GRGCYC 1 cut(s) 921
ErhI CCWWGG 2 cut(s) 196, 1272
FaeI CATG 7 cut(s) 342, 364, 623, 849, 865, 1165, 1312
FalI AAGNNNNNCTT 4 cut(s) 267, 299, 450, 482
FaqI GGGAC 1 cut(s) 959
FatI CATG 7 cut(s) 338, 360, 619, 845, 861, 1161, 1308
FbaI TGATCA 2 cut(s) 97, 373
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 4 cut(s) 435, 683, 1287, 1290
FokI GGATG 2 cut(s) 1166, 1325
FriOI GRGCYC 1 cut(s) 921
Fsp4HI GCNGC 4 cut(s) 435, 683, 1287, 1290
FspBI CTAG 4 cut(s) 197, 479, 597, 834
GluI GCNGC 4 cut(s) 435, 683, 1287, 1290
GsaI CCCAGC 1 cut(s) 796
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 4 cut(s) 37, 1166, 1262, 1302
Hin1II CATG 7 cut(s) 342, 364, 623, 849, 865, 1165, 1312
HindIII AAGCTT 2 cut(s) 421, 780
HinfI GANTC 7 cut(s) 143, 503, 629, 643, 1062, 1244, 1305
HphI GGTGA 4 cut(s) 107, 136, 478, 847
Hpy166II GTNNAC 2 cut(s) 808, 1015
Hpy188I TCNGA 2 cut(s) 512, 573
Hpy188III TCNNGA 5 cut(s) 397, 411, 500, 620, 649
Hpy8I GTNNAC 2 cut(s) 808, 1015
HpyAV CCTTC 5 cut(s) 75, 157, 168, 568, 721
HpyCH4III ACNGT 4 cut(s) 46, 124, 518, 1005
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 6 cut(s) 659, 682, 849, 974, 1040, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 1079, 1283
HpyF3I CTNAG 2 cut(s) 314, 443
HpySE526I ACGT 1 cut(s) 738
Hsp92II CATG 7 cut(s) 342, 364, 623, 849, 865, 1165, 1312
Ksp22I TGATCA 2 cut(s) 97, 373
Kzo9I GATC 4 cut(s) 97, 373, 507, 961
LmnI GCTCC 1 cut(s) 916
LpnPI CCDG 9 cut(s) 51, 396, 662, 778, 899, 984, 1087, 1145, 1170
Lsp1109I GCAGC 2 cut(s) 694, 1276
LweI GCATC 4 cut(s) 29, 398, 588, 880
MaeI CTAG 4 cut(s) 197, 479, 597, 834
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 4 cut(s) 46, 326, 772, 853
MalI GATC 4 cut(s) 99, 375, 509, 963
MboI GATC 4 cut(s) 97, 373, 507, 961
MboII GAAGA 4 cut(s) 287, 470, 482, 920
MfeI CAATTG 1 cut(s) 1342
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 1 cut(s) 921
MlsI TGGCCA 1 cut(s) 1262
MluNI TGGCCA 1 cut(s) 1262
MlyI GAGTC 5 cut(s) 137, 512, 637, 1238, 1299
MmeI TCCRAC 2 cut(s) 645, 1198
MnlI CCTC 5 cut(s) 466, 537, 828, 831, 1203
Mox20I TGGCCA 1 cut(s) 1262
MscI TGGCCA 1 cut(s) 1262
MseI TTAA 6 cut(s) 57, 384, 419, 521, 557, 1175
MslI CAYNNNNRTG 2 cut(s) 587, 860
Msp20I TGGCCA 1 cut(s) 1262
MunI CAATTG 1 cut(s) 1342
Mva1269I GAATGC 1 cut(s) 138
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 26, 1079, 1283
NdeII GATC 4 cut(s) 97, 373, 507, 961
NlaIII CATG 7 cut(s) 342, 364, 623, 849, 865, 1165, 1312
NmuCI GTSAC 1 cut(s) 853
NspV TTCGAA 2 cut(s) 536, 813
OliI CACNNNNGTG 1 cut(s) 587
PagI TCATGA 1 cut(s) 619
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 629, 1062
PflMI CCANNNNNTGG 1 cut(s) 1254
PkrI GCNGC 4 cut(s) 436, 684, 1288, 1291
PleI GAGTC 5 cut(s) 137, 511, 637, 1238, 1299
PpsI GAGTC 5 cut(s) 137, 511, 637, 1238, 1299
PsiI TTATAA 2 cut(s) 761, 996
Psp124BI GAGCTC 1 cut(s) 921
PspEI GGTNACC 1 cut(s) 772
PspFI CCCAGC 1 cut(s) 792
PspPI GGNCC 1 cut(s) 1324
PstI CTGCAG 2 cut(s) 684, 976
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 3 cut(s) 359, 809, 1335
RsaNI GTAC 3 cut(s) 358, 808, 1334
RseI CAYNNNNRTG 2 cut(s) 587, 860
SacI GAGCTC 1 cut(s) 921
SaqAI TTAA 6 cut(s) 57, 384, 419, 521, 557, 1175
SatI GCNGC 4 cut(s) 435, 683, 1287, 1290
Sau3AI GATC 4 cut(s) 97, 373, 507, 961
Sau96I GGNCC 1 cut(s) 1324
SchI GAGTC 5 cut(s) 137, 512, 637, 1238, 1299
SduI GDGCHC 1 cut(s) 921
SfaNI GCATC 4 cut(s) 29, 398, 588, 880
SfcI CTRYAG 2 cut(s) 680, 972
SfuI TTCGAA 2 cut(s) 536, 813
SinI GGWCC 1 cut(s) 1324
SmiMI CAYNNNNRTG 2 cut(s) 587, 860
SmlI CTYRAG 3 cut(s) 24, 397, 500
SmoI CTYRAG 3 cut(s) 24, 397, 500
SsiI CCGC 5 cut(s) 435, 858, 1286, 1292, 1322
SspI AATATT 1 cut(s) 824
SspMI CTAG 4 cut(s) 197, 479, 597, 834
SstI GAGCTC 1 cut(s) 921
StyI CCWWGG 2 cut(s) 196, 1272
TaaI ACNGT 4 cut(s) 46, 124, 518, 1005
TaiI ACGT 1 cut(s) 741
TaqI TCGA 6 cut(s) 307, 506, 536, 813, 1060, 1251
TatI WGTACW 2 cut(s) 357, 807
TauI GCSGC 2 cut(s) 437, 1289
TfiI GAWTC 2 cut(s) 629, 1062
Tru1I TTAA 6 cut(s) 57, 384, 419, 521, 557, 1175
Tru9I TTAA 6 cut(s) 57, 384, 419, 521, 557, 1175
TscAI CASTG 3 cut(s) 810, 1008, 1024
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 2 cut(s) 682, 1289
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 6 cut(s) 327, 444, 636, 998, 1100, 1170
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 3 cut(s) 810, 1008, 1024
Van91I CCANNNNNTGG 1 cut(s) 1254
VpaK11BI GGWCC 1 cut(s) 1324
XagI CCTNNNNNAGG 1 cut(s) 832
XapI RAATTY 3 cut(s) 12, 234, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 1255
XmaJI CCTAGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 1014
XspI CTAG 4 cut(s) 197, 479, 597, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.