Rroxscaffold_4G00317190

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000053
Physical Location & Seq
Reverse (-)
42336975 .. 42345429
8455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317190.1

Sequence Viewer

Length: 1224 bp
ATGATTGATGGTTCATTAAAAATAGTGATGCAAGAGGAGGCTATTTCCTGGATCCGAAAAAGAGTATTTGGGTGGGGAGGGGTGACTGCTGACCTGTTTTCAGACCAAACTGGACCCAGTTGGATATCTTCTATCCAGCCACCTTTTGATGGTAGATTGGAAGCGGCAGATGGTAAAAGTAAGAAACATATCCAAGACTTGAAGGAAGAGCTGAAGAGGATGATAATGGCTCCAGCGAAAAGGCCTTCACAAAAATTGCACTTCATCGACCACATTCAGCGCTTAGGTGTCTCATACCATTTCGAAGATGAGATTGACCAAATTTTGCAGCAAGTTCACCGAGAAGAAGAATATGATGATCTTTGCACCACTGCTCTAAGCTTTCGATTGCTTAGACAACAGGGTTATAACATTTCATGCAGCAAGTCATCAGTCGATCTCCAGCTCCGTGTCAATTATTTCAAGGATGATGACGGAAGGTTTAAAGAATCCCTTATTGATGATGTACTCGGCCTGTTAAGTTTGTATGAAGCCTCACATCTTCAGATGCCCGGGGAGGATATACTGAATGACGCACTAACCTTCACCACCGCTCATCTCGAGTCTGCAGCACACCGCTTAAGCTCGTCGTCTCTGCTTTGGAAACAAGTAACTCATGCCTTGTATCAACCACTTTGGCAGGGCATGGCCAGGATTGAAGCCAGGCATTACTTGTCTATTTACCAAGAAGATGATTCACATAATGAAACTCTCCTGAATTTTGCAAAGCTTGATTTTAACACTGTGCAGAAAGTTCATCAGAAAGAACTAAGCGAAATTACGAGGTGGTGGAAGGACTTGGACTTTGTAACCAAGCTACCTTTTGCAAGAGACAAGGTAGTTGAGGCCTATTTTTGGGCTTTGGCAGTCTACTTTCAGCCGGAATATTACTTTGCCAGGATTGTATTAGCCAAAGCTTTTAAAGCTCAAGTCAGAGCTTACTTCCAGGAAGCGAAATGGTTGAAACAAAAGTACACACCAACAATGGAAGAGTATATGTCTGTGGAACGCGATGCATCCTTCTTCATGGTAGCAGTAGTGTCATTTGTTGGAATGGGAGTTATTGTTACAAAAGACTCCATGGATTGGGTTTTCAATGAACCTAAGATTTCAAAGGCCGCATCTATAATTGGCAGACTCATGAATGACCTTGTAAGCCATAAGGTACGCGGTAATCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

407

Amino Acids

47.14

Weight (kDa)

6.18

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 58 - 221 2.5e-50 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 278 - 320 4.7e-13 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 316 - 401 5e-21 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 317 - 402 3.2e-24 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 1125
AccBSI CCGCTC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 909
AccII CGCG 2 cut(s) 1050, 1209
AciI CCGC 5 cut(s) 164, 591, 616, 1158, 1209
AclWI GGATC 2 cut(s) 46, 59
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 321, 757
AcuI CTGAAG 2 cut(s) 233, 527
AfaI GTAC 3 cut(s) 507, 1013, 1206
AfeI AGCGCT 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 149, 894, 1125
AflII CTTAAG 1 cut(s) 619
AgsI TTSAA 6 cut(s) 202, 463, 698, 1003, 1135, 1152
AjnI CCWGG 5 cut(s) 47, 689, 701, 935, 984
AluBI AGCT 9 cut(s) 211, 381, 445, 624, 769, 856, 956, 965, 977
AluI AGCT 9 cut(s) 211, 381, 445, 624, 769, 856, 956, 965, 977
Alw26I GTCTC 3 cut(s) 295, 636, 864
AlwI GGATC 2 cut(s) 46, 59
Ama87I CYCGRG 2 cut(s) 551, 599
Aor51HI AGCGCT 1 cut(s) 281
AoxI GGCC 5 cut(s) 242, 511, 687, 885, 1155
ApeKI GCWGC 3 cut(s) 328, 420, 608
ApoI RAATTY 2 cut(s) 321, 757
ArsI GACNNNNNNTTYG 2 cut(s) 827, 859
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 2 cut(s) 552, 553
AsuHPI GGTGA 3 cut(s) 94, 329, 577
AsuII TTCGAA 1 cut(s) 303
AvaI CYCGRG 2 cut(s) 551, 599
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 689
BamHI GGATCC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 340, 432, 620
BccI CCATC 3 cut(s) 2, 143, 164
BciT130I CCWGG 5 cut(s) 49, 691, 703, 937, 986
BcnI CCSGG 2 cut(s) 552, 553
BcoDI GTCTC 3 cut(s) 295, 636, 864
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 283
BfrI CTTAAG 1 cut(s) 619
BisI GCNGC 5 cut(s) 165, 329, 421, 609, 1158
BlsI GCNGC 5 cut(s) 166, 330, 422, 610, 1159
Bme1390I CCNGG 7 cut(s) 49, 552, 553, 691, 703, 937, 986
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 2 cut(s) 551, 599
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 3 cut(s) 53, 115, 231
BmrFI CCNGG 7 cut(s) 49, 552, 553, 691, 703, 937, 986
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 5 cut(s) 18, 537, 1042, 1064, 1169
BmuI ACTGGG 1 cut(s) 111
BpmI CTGGAG 2 cut(s) 216, 425
Bpu10I CCTNAGC 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 951
BpuMI CCSGG 2 cut(s) 552, 553
BsaJI CCNNGG 3 cut(s) 551, 552, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 894, 1125
Bse1I ACTGG 2 cut(s) 115, 117
BseBI CCWGG 5 cut(s) 49, 691, 703, 937, 986
BseDI CCNNGG 3 cut(s) 551, 552, 1119
BseGI GGATG 3 cut(s) 225, 472, 1055
BseLI CCNNNNNNNGG 3 cut(s) 149, 894, 1125
BseNI ACTGG 2 cut(s) 115, 117
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 340, 432, 620
BsgI GTGCAG 1 cut(s) 806
Bsh1236I CGCG 2 cut(s) 1050, 1209
BshFI GGCC 5 cut(s) 244, 513, 689, 887, 1157
BsiHKCI CYCGRG 2 cut(s) 551, 599
BsiSI CCGG 2 cut(s) 552, 920
BslI CCNNNNNNNGG 3 cut(s) 149, 894, 1125
BsmAI GTCTC 3 cut(s) 295, 636, 864
BsmBI CGTCTC 1 cut(s) 636
BsnI GGCC 5 cut(s) 244, 513, 689, 887, 1157
BsoBI CYCGRG 2 cut(s) 551, 599
Bsp119I TTCGAA 1 cut(s) 303
Bsp143I GATC 3 cut(s) 51, 358, 436
Bsp19I CCATGG 1 cut(s) 1119
BspACI CCGC 5 cut(s) 164, 591, 616, 1158, 1209
BspANI GGCC 5 cut(s) 244, 513, 689, 887, 1157
BspFNI CGCG 2 cut(s) 1050, 1209
BspHI TCATGA 1 cut(s) 1179
BspLI GGNNCC 3 cut(s) 53, 115, 231
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 2 cut(s) 46, 59
BspQI GCTCTTC 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 303
BspTI CTTAAG 1 cut(s) 619
BsrBI CCGCTC 1 cut(s) 593
BsrI ACTGG 2 cut(s) 115, 117
BssECI CCNNGG 3 cut(s) 551, 552, 1119
BssMI GATC 3 cut(s) 51, 358, 436
BssT1I CCWWGG 1 cut(s) 1119
Bst2UI CCWGG 5 cut(s) 49, 691, 703, 937, 986
Bst4CI ACNGT 1 cut(s) 784
Bst6I CTCTTC 3 cut(s) 201, 209, 1023
BstAFI CTTAAG 1 cut(s) 619
BstBI TTCGAA 1 cut(s) 303
BstDEI CTNAG 5 cut(s) 283, 377, 392, 809, 1143
BstDSI CCRYGG 1 cut(s) 1119
BstF5I GGATG 3 cut(s) 225, 472, 1055
BstFNI CGCG 2 cut(s) 1050, 1209
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 3 cut(s) 54, 361, 439
BstMAI GTCTC 3 cut(s) 295, 636, 864
BstMBI GATC 3 cut(s) 51, 358, 436
BstMWI GCNNNNNNNGC 1 cut(s) 962
BstNI CCWGG 5 cut(s) 49, 691, 703, 937, 986
BstSCI CCNGG 7 cut(s) 47, 550, 551, 689, 701, 935, 984
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 2 cut(s) 1050, 1209
BstV1I GCAGC 3 cut(s) 340, 432, 620
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 5 cut(s) 244, 513, 689, 887, 1157
BtgI CCRYGG 1 cut(s) 1119
BtgZI GCGATG 1 cut(s) 1065
BtsCI GGATG 3 cut(s) 225, 472, 1055
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 369, 780
CciI TCATGA 1 cut(s) 1179
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 113
Cfr9I CCCGGG 1 cut(s) 551
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 506, 1012, 1205
CviAII CATG 7 cut(s) 417, 656, 685, 1066, 1120, 1180, 1217
CviQI GTAC 3 cut(s) 506, 1012, 1205
DdeI CTNAG 5 cut(s) 283, 377, 392, 809, 1143
DpnI GATC 3 cut(s) 53, 360, 438
DpnII GATC 3 cut(s) 51, 358, 436
DraI TTTAAA 2 cut(s) 484, 961
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 201, 209, 1023
EarI CTCTTC 3 cut(s) 201, 209, 1023
Eco130I CCWWGG 1 cut(s) 1119
Eco147I AGGCCT 2 cut(s) 244, 887
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 113
Eco47III AGCGCT 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 233, 527
Eco88I CYCGRG 2 cut(s) 551, 599
EcoRII CCWGG 5 cut(s) 47, 689, 701, 935, 984
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 1119
EcoT22I ATGCAT 1 cut(s) 1057
ErhI CCWWGG 1 cut(s) 1119
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 7 cut(s) 420, 659, 688, 1069, 1123, 1183, 1220
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 7 cut(s) 416, 655, 684, 1065, 1119, 1179, 1216
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 5 cut(s) 165, 329, 421, 609, 1158
FokI GGATG 3 cut(s) 232, 479, 1042
Fsp4HI GCNGC 5 cut(s) 165, 329, 421, 609, 1158
GlaI GCGC 1 cut(s) 281
GluI GCNGC 5 cut(s) 165, 329, 421, 609, 1158
GsuI CTGGAG 2 cut(s) 216, 425
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 5 cut(s) 244, 513, 689, 887, 1157
HapII CCGG 2 cut(s) 552, 920
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 282
Hin1II CATG 7 cut(s) 420, 659, 688, 1069, 1123, 1183, 1220
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HindIII AAGCTT 3 cut(s) 379, 767, 954
HinfI GANTC 5 cut(s) 488, 602, 734, 1115, 1176
HpaII CCGG 2 cut(s) 552, 920
HphI GGTGA 3 cut(s) 94, 329, 577
Hpy166II GTNNAC 3 cut(s) 337, 910, 1014
Hpy188I TCNGA 5 cut(s) 56, 103, 546, 801, 974
Hpy188III TCNNGA 3 cut(s) 599, 754, 1180
Hpy8I GTNNAC 3 cut(s) 337, 910, 1014
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 6 cut(s) 196, 255, 471, 592, 826, 1069
HpyCH4III ACNGT 1 cut(s) 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 962
HpyF3I CTNAG 5 cut(s) 283, 377, 392, 809, 1143
Hsp92II CATG 7 cut(s) 420, 659, 688, 1069, 1123, 1183, 1220
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 51, 358, 436
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 2 cut(s) 235, 450
Lsp1109I GCAGC 3 cut(s) 340, 432, 620
LweI GCATC 5 cut(s) 18, 537, 1042, 1064, 1169
MaeIII GTNAC 4 cut(s) 82, 649, 847, 1105
MalI GATC 3 cut(s) 53, 360, 438
MbiI CCGCTC 1 cut(s) 593
MboI GATC 3 cut(s) 51, 358, 436
MflI RGATCY 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 689
MluCI AATT 6 cut(s) 254, 321, 454, 757, 816, 1167
MluNI TGGCCA 1 cut(s) 689
MlyI GAGTC 3 cut(s) 611, 1109, 1170
MmeI TCCRAC 2 cut(s) 101, 1069
MnlI CCTC 8 cut(s) 28, 31, 71, 210, 544, 550, 816, 877
Mox20I TGGCCA 1 cut(s) 689
Mph1103I ATGCAT 1 cut(s) 1057
MscI TGGCCA 1 cut(s) 689
MseI TTAA 7 cut(s) 17, 483, 518, 620, 777, 960, 1222
Msp20I TGGCCA 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 619
MspI CCGG 2 cut(s) 552, 920
MspR9I CCNGG 7 cut(s) 49, 552, 553, 691, 703, 937, 986
MvaI CCWGG 5 cut(s) 49, 691, 703, 937, 986
MvnI CGCG 2 cut(s) 1050, 1209
MwoI GCNNNNNNNGC 1 cut(s) 962
NciI CCSGG 2 cut(s) 552, 553
NcoI CCATGG 1 cut(s) 1119
NdeII GATC 3 cut(s) 51, 358, 436
NlaIII CATG 7 cut(s) 420, 659, 688, 1069, 1123, 1183, 1220
NlaIV GGNNCC 3 cut(s) 53, 115, 231
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 1057
NspV TTCGAA 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 599
PagI TCATGA 1 cut(s) 1179
PceI AGGCCT 2 cut(s) 244, 887
PciSI GCTCTTC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 488, 734
PflMI CCANNNNNTGG 1 cut(s) 1125
PfoI TCCNGGA 2 cut(s) 47, 984
PkrI GCNGC 5 cut(s) 166, 330, 422, 610, 1159
PleI GAGTC 3 cut(s) 610, 1109, 1170
PpsI GAGTC 3 cut(s) 610, 1109, 1170
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 5 cut(s) 47, 689, 701, 935, 984
PspGI CCWGG 5 cut(s) 47, 689, 701, 935, 984
PspN4I GGNNCC 3 cut(s) 53, 115, 231
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 3 cut(s) 507, 1013, 1206
RsaNI GTAC 3 cut(s) 506, 1012, 1205
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 7 cut(s) 17, 483, 518, 620, 777, 960, 1222
SatI GCNGC 5 cut(s) 165, 329, 421, 609, 1158
Sau3AI GATC 3 cut(s) 51, 358, 436
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 3 cut(s) 611, 1109, 1170
ScrFI CCNGG 7 cut(s) 49, 552, 553, 691, 703, 937, 986
SfaNI GCATC 5 cut(s) 18, 537, 1042, 1064, 1169
SfcI CTRYAG 1 cut(s) 606
Sfr274I CTCGAG 1 cut(s) 599
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 599
SmaI CCCGGG 1 cut(s) 553
SmlI CTYRAG 3 cut(s) 599, 619, 966
SmoI CTYRAG 3 cut(s) 599, 619, 966
Sse9I AATT 6 cut(s) 254, 321, 454, 757, 816, 1167
SseBI AGGCCT 2 cut(s) 244, 887
SsiI CCGC 5 cut(s) 164, 591, 616, 1158, 1209
SspI AATATT 1 cut(s) 926
StuI AGGCCT 2 cut(s) 244, 887
StyD4I CCNGG 7 cut(s) 47, 550, 551, 689, 701, 935, 984
StyI CCWWGG 1 cut(s) 1119
TaaI ACNGT 1 cut(s) 784
TaqI TCGA 5 cut(s) 267, 303, 385, 435, 600
TasI AATT 6 cut(s) 254, 321, 454, 757, 816, 1167
TatI WGTACW 2 cut(s) 505, 1011
TauI GCSGC 2 cut(s) 167, 1160
TfiI GAWTC 2 cut(s) 488, 734
Tru1I TTAA 7 cut(s) 17, 483, 518, 620, 777, 960, 1222
Tru9I TTAA 7 cut(s) 17, 483, 518, 620, 777, 960, 1222
TscAI CASTG 2 cut(s) 376, 787
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 3 cut(s) 328, 420, 608
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 8 cut(s) 253, 405, 543, 759, 785, 1054, 1152, 1196
TspGWI ACGGA 2 cut(s) 437, 489
TspMI CCCGGG 1 cut(s) 551
TspRI CASTG 2 cut(s) 376, 787
Van91I CCANNNNNTGG 1 cut(s) 1125
Vha464I CTTAAG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 321, 757
XhoI CTCGAG 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 909
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.