RchiOBHm_Chr5g0038021

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000053
Physical Location & Seq
Reverse (-)
32691789 .. 32694799
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31668

Sequence Viewer

Length: 1698 bp
ATGTCTCTCAACGTGGTCAGTATAGCTTCTCAAGCCCCTCCAACCGGCCTGAATGCCTCTACTGATGCCAACAGTCGACGTTCGGCTAATTTCCATCCCAGCATTTGGGGAGATCAGTTTCTGTCGTATAACAACAGTACTATGGAAACTAACATGAAAGGTGAGAAACGTGTCCAACAACTGAAGGAAGAAGTGAAGAGAATGCTACTGGATCCGCCAGTGGAAACTTGTTTGGAAAAACTGGAGTTGGTTGATGACATTCAACGCTTGGGCGCGTCTTACCATTTTGAATACGAGATTGACCAAACTATGCAGCAAATTCACGACAATTTTAATGGTTACTGTGATGATGACCTGCACACTTGTGCTCTTCGTTTTCGCTTGCTAAGGCAGCATGGTTACAATGTTTCGTGCGATATGTTCAACAAGTTCAAGGACGGTGATGGAAAATTGAACAAATCACTTCACTATGATGTAGTGGGACTACAAAGCTTGTATGAAGCCACACATCTTAGAGTACGAGGAGAGGATTTTCTAGAAGAAGCACTAACCTGCACCACTACACTTCTAGAGTCGGCAGCGCTAGCAAACCGTCTAAGCCCGCCGCTTTTCAAACAAGTAAGGCATGCCTTGAATCAACCACTGCGGAAGGGCTTACCGAGGCTAGAAGCGAGGCACTACATGTCTCTACACCAGGAACTACACGGATCACGCAACCAAATTTTGCTGAGTTTTGCAAAGCTGGATTTCAACCTGCTCCAACAAGTGCATCAGACAGAATTAAGTGATATTGCAAGGTGGTGGAAAGAGTTGGACTTTGCTAGCAAGCTACCTTTTGCAAGAGACAGAGTAATTGAGTGCTACTTCTGGATTTTGGGAGTCTACTTTGAGCCTAAGTATTACTTTGCCAGGAGGACACTTACCAAAGTTGCTGCCATGACATCCATTATCGATGACATTTATGATGTGTATGGCACGCTTGAAGAACTAGACCTCTTTACTAGAGCAATTGAGAGGTGGGATATCTCCGCCATAGATGAACTACTGGAGTATATGAAAGTCTGTTACAAGGCACTGTTAGATGTCTATGCTGAAACAGAACAAGAGCTTGCAAAATCTTCCCTCGCATATCGTATCGATTACGCAAAAGAAGCGATGAAGAGACAAGTTAGGGCATACCATGCTGAAGCAAAATGGTTCCACAAGAACTACACGCCAACAATGGATGAATACATGGAAGTAGCCCTTGTCACTTCAGGCTACCCAATGCTAGCAACCACATCGTTTGTTCTAATGGGAGATATCGTTACAAAAGACTCCTTTGAGTGGATCTTCAGTGAAACTAAGATTGTCAAGGCTTCATCAGTAGTTTGCAGACTCATGGATGACATTGTATCCCGCAAGTTTGAGCAAAAGAGAGGACATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCGACAGAAGAACAAACCATAATTGAATTTCGTAAACAAGTGAGTGATGCATGGAAGGACATCAATGAAGAGTGCCTCCACCCTACACCTCTTGACATGCCCCTCTTAATGCGAGTTCTGAATCTCACACGCGTGATAGATGTATTATACAAGCATGAAGATTGCTACACTCATGCTGGAACCATTCTCAAAGATTTTGTAACTTCTCTACTTATCGAACCTGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

565

Amino Acids

65.52

Weight (kDa)

5.63

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 35 - 211 5.4e-55 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 269 - 508 5.9e-102 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 309 - 508 2.8e-61 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 363, 560, 762
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 2 cut(s) 76, 882
AccII CGCG 2 cut(s) 275, 1596
AciI CCGC 6 cut(s) 215, 602, 605, 646, 1029, 1399
AclWI GGATC 4 cut(s) 206, 219, 715, 1337
AcsI RAATTY 3 cut(s) 318, 720, 1490
AcuI CTGAAG 4 cut(s) 203, 1206, 1239, 1318
AfaI GTAC 2 cut(s) 139, 519
AfeI AGCGCT 1 cut(s) 582
AfiI CCNNNNNNNGG 3 cut(s) 44, 105, 1326
AflIII ACRYGT 4 cut(s) 169, 681, 1423, 1594
AjnI CCWGG 2 cut(s) 693, 908
AleI CACNNNNGTG 2 cut(s) 363, 1595
AluBI AGCT 5 cut(s) 26, 492, 742, 829, 1108
AluI AGCT 5 cut(s) 26, 492, 742, 829, 1108
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 4 cut(s) 9, 690, 837, 1156
AlwI GGATC 4 cut(s) 206, 219, 715, 1337
AlwNI CAGNNNCTG 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 582
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 4 cut(s) 313, 391, 578, 932
ApoI RAATTY 3 cut(s) 318, 720, 1490
AspLEI GCGC 2 cut(s) 275, 583
AsuHPI GGTGA 2 cut(s) 173, 452
AsuNHI GCTAGC 3 cut(s) 583, 821, 1270
BamHI GGATCC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 325, 403, 590, 919
BccI CCATC 2 cut(s) 102, 437
BcgI CGANNNNNNTGC 2 cut(s) 1263, 1297
BciT130I CCWGG 2 cut(s) 695, 910
BciVI GTATCC 1 cut(s) 1405
BcoDI GTCTC 4 cut(s) 9, 690, 837, 1156
BfaI CTAG 8 cut(s) 536, 569, 584, 665, 822, 989, 1002, 1271
BfoI RGCGCY 1 cut(s) 584
BfuAI ACCTGC 3 cut(s) 363, 560, 762
BfuI GTATCC 1 cut(s) 1405
BisI GCNGC 5 cut(s) 314, 392, 579, 605, 933
BlsI GCNGC 5 cut(s) 315, 393, 580, 606, 934
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 695, 910
BmiI GGNNCC 3 cut(s) 213, 1199, 1645
BmrFI CCNGG 2 cut(s) 695, 910
BmsI GCATC 3 cut(s) 55, 778, 1501
BmtI GCTAGC 3 cut(s) 587, 825, 1274
BpmI CTGGAG 2 cut(s) 263, 1067
Bpu10I CCTNAGC 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 2 cut(s) 951, 1137
BsaJI CCNNGG 2 cut(s) 659, 1431
BsaXI ACNNNNNCTCC 2 cut(s) 1290, 1320
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 105, 1326
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 4 cut(s) 213, 218, 246, 1050
BseBI CCWGG 2 cut(s) 695, 910
BseCI ATCGAT 2 cut(s) 951, 1137
BseDI CCNNGG 2 cut(s) 659, 1431
BseGI GGATG 4 cut(s) 94, 941, 1231, 1390
BseLI CCNNNNNNNGG 3 cut(s) 44, 105, 1326
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 4 cut(s) 213, 218, 246, 1050
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 4 cut(s) 325, 403, 590, 919
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 2 cut(s) 341, 538
Bsh1236I CGCG 2 cut(s) 275, 1596
BshFI GGCC 1 cut(s) 48
BshVI ATCGAT 2 cut(s) 951, 1137
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 3 cut(s) 44, 105, 1326
BsmAI GTCTC 4 cut(s) 9, 690, 837, 1156
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 2 cut(s) 58, 207
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 112, 211, 707, 1329
BspACI CCGC 6 cut(s) 215, 602, 605, 646, 1029, 1399
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 720
BspDI ATCGAT 2 cut(s) 951, 1137
BspFNI CGCG 2 cut(s) 275, 1596
BspLI GGNNCC 3 cut(s) 213, 1199, 1645
BspMI ACCTGC 3 cut(s) 363, 560, 762
BspOI GCTAGC 3 cut(s) 587, 825, 1274
BspPI GGATC 4 cut(s) 206, 219, 715, 1337
BspQI GCTCTTC 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 4 cut(s) 213, 218, 246, 1050
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 659, 1431
BssMI GATC 4 cut(s) 112, 211, 707, 1329
Bst2UI CCWGG 2 cut(s) 695, 910
Bst4CI ACNGT 7 cut(s) 74, 137, 344, 440, 593, 1077, 1463
Bst6I CTCTTC 4 cut(s) 191, 375, 1154, 1527
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstC8I GCNNGC 9 cut(s) 383, 585, 602, 627, 823, 827, 977, 1110, 1272
BstDEI CTNAG 6 cut(s) 386, 512, 596, 728, 894, 1344
BstF5I GGATG 4 cut(s) 94, 941, 1231, 1390
BstFNI CGCG 2 cut(s) 275, 1596
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 275, 583
BstKTI GATC 4 cut(s) 115, 214, 710, 1332
BstMAI GTCTC 4 cut(s) 9, 690, 837, 1156
BstMBI GATC 4 cut(s) 112, 211, 707, 1329
BstMWI GCNNNNNNNGC 5 cut(s) 32, 391, 584, 1151, 1181
BstNI CCWGG 2 cut(s) 695, 910
BstNSI RCATGY 4 cut(s) 629, 685, 1427, 1564
BstSCI CCNGG 2 cut(s) 693, 908
BstUI CGCG 2 cut(s) 275, 1596
BstV1I GCAGC 4 cut(s) 325, 403, 590, 919
BstX2I RGATCY 2 cut(s) 211, 1329
BstYI RGATCY 2 cut(s) 211, 1329
Bsu15I ATCGAT 2 cut(s) 951, 1137
BsuI GTATCC 1 cut(s) 1405
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 2 cut(s) 951, 1137
BtgZI GCGATG 1 cut(s) 1169
BtsCI GGATG 4 cut(s) 94, 941, 1231, 1390
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 4 cut(s) 225, 641, 1073, 1342
BveI ACCTGC 3 cut(s) 363, 560, 762
Cac8I GCNNGC 9 cut(s) 383, 585, 602, 627, 823, 827, 977, 1110, 1272
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 2 cut(s) 275, 583
Cfr10I RCCGGY 1 cut(s) 44
ClaI ATCGAT 2 cut(s) 951, 1137
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 138, 518
CspCI CAANNNNNGTGG 2 cut(s) 1267, 1302
CviQI GTAC 2 cut(s) 138, 518
DdeI CTNAG 6 cut(s) 386, 512, 596, 728, 894, 1344
DpnI GATC 4 cut(s) 114, 213, 709, 1331
DpnII GATC 4 cut(s) 112, 211, 707, 1329
Eam1104I CTCTTC 4 cut(s) 191, 375, 1154, 1527
EarI CTCTTC 4 cut(s) 191, 375, 1154, 1527
EciI GGCGGA 2 cut(s) 204, 1018
Eco32I GATATC 2 cut(s) 1024, 1303
Eco47III AGCGCT 1 cut(s) 582
Eco57I CTGAAG 4 cut(s) 203, 1206, 1239, 1318
EcoRII CCWGG 2 cut(s) 693, 908
EcoRV GATATC 2 cut(s) 1024, 1303
EcoT22I ATGCAT 1 cut(s) 1516
FalI AAGNNNNNCTT 4 cut(s) 887, 919, 1230, 1262
FaqI GGGAC 1 cut(s) 495
FauI CCCGC 2 cut(s) 609, 1406
FblI GTMKAC 2 cut(s) 76, 882
Fnu4HI GCNGC 5 cut(s) 314, 392, 579, 605, 933
FokI GGATG 4 cut(s) 81, 928, 1238, 1397
Fsp4HI GCNGC 5 cut(s) 314, 392, 579, 605, 933
FspBI CTAG 8 cut(s) 536, 569, 584, 665, 822, 989, 1002, 1271
GlaI GCGC 2 cut(s) 274, 582
GluI GCNGC 5 cut(s) 314, 392, 579, 605, 933
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 2 cut(s) 263, 1067
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 264
HhaI GCGC 2 cut(s) 275, 583
Hin6I GCGC 2 cut(s) 273, 581
HinP1I GCGC 2 cut(s) 273, 581
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 6 cut(s) 572, 634, 879, 1316, 1377, 1585
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 173, 452
Hpy166II GTNNAC 3 cut(s) 77, 883, 1499
Hpy188I TCNGA 2 cut(s) 774, 1584
Hpy188III TCNNGA 5 cut(s) 323, 536, 569, 868, 1556
Hpy8I GTNNAC 3 cut(s) 77, 883, 1499
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 3 cut(s) 178, 643, 1513
HpyCH4III ACNGT 7 cut(s) 74, 137, 344, 440, 593, 1077, 1463
HpyCH4IV ACGT 3 cut(s) 12, 79, 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 391, 584, 1151, 1181
HpyF3I CTNAG 6 cut(s) 386, 512, 596, 728, 894, 1344
HpySE526I ACGT 3 cut(s) 12, 79, 169
HspAI GCGC 2 cut(s) 273, 581
Kzo9I GATC 4 cut(s) 112, 211, 707, 1329
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 762
Lsp1109I GCAGC 4 cut(s) 325, 403, 590, 919
LweI GCATC 3 cut(s) 55, 778, 1501
MaeI CTAG 8 cut(s) 536, 569, 584, 665, 822, 989, 1002, 1271
MaeII ACGT 3 cut(s) 12, 79, 169
MaeIII GTNAC 7 cut(s) 338, 398, 1064, 1249, 1306, 1445, 1663
MalI GATC 4 cut(s) 114, 213, 709, 1331
MboI GATC 4 cut(s) 112, 211, 707, 1329
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 2 cut(s) 211, 1329
MhlI GDGCHC 1 cut(s) 370
MluI ACGCGT 1 cut(s) 1594
MlyI GAGTC 4 cut(s) 581, 888, 1310, 1371
MmeI TCCRAC 4 cut(s) 65, 199, 784, 792
Mph1103I ATGCAT 1 cut(s) 1516
MseI TTAA 3 cut(s) 333, 782, 1571
MslI CAYNNNNRTG 3 cut(s) 363, 471, 1595
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 695, 910
MunI CAATTG 1 cut(s) 1008
Mva1269I GAATGC 2 cut(s) 58, 207
MvaI CCWGG 2 cut(s) 695, 910
MvnI CGCG 2 cut(s) 275, 1596
MwoI GCNNNNNNNGC 5 cut(s) 32, 391, 584, 1151, 1181
NdeII GATC 4 cut(s) 112, 211, 707, 1329
NheI GCTAGC 3 cut(s) 583, 821, 1270
NlaIV GGNNCC 3 cut(s) 213, 1199, 1645
NmeAIII GCCGAG 1 cut(s) 1412
NmuCI GTSAC 1 cut(s) 1249
NsiI ATGCAT 1 cut(s) 1516
NspI RCATGY 4 cut(s) 629, 685, 1427, 1564
OliI CACNNNNGTG 2 cut(s) 363, 1595
PaeI GCATGC 1 cut(s) 629
PciI ACATGT 2 cut(s) 681, 1423
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 2 cut(s) 58, 207
PfeI GAWTC 2 cut(s) 634, 1585
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 5 cut(s) 315, 393, 580, 606, 934
PleI GAGTC 4 cut(s) 580, 887, 1310, 1371
PpsI GAGTC 4 cut(s) 580, 887, 1310, 1371
PscI ACATGT 2 cut(s) 681, 1423
Psp6I CCWGG 2 cut(s) 693, 908
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 693, 908
PspN4I GGNNCC 3 cut(s) 213, 1199, 1645
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 211, 1329
RsaI GTAC 2 cut(s) 139, 519
RsaNI GTAC 2 cut(s) 138, 518
RseI CAYNNNNRTG 3 cut(s) 363, 471, 1595
SalI GTCGAC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 333, 782, 1571
SatI GCNGC 5 cut(s) 314, 392, 579, 605, 933
Sau3AI GATC 4 cut(s) 112, 211, 707, 1329
ScaI AGTACT 1 cut(s) 139
SchI GAGTC 4 cut(s) 581, 888, 1310, 1371
ScrFI CCNGG 2 cut(s) 695, 910
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 3 cut(s) 55, 778, 1501
SmiMI CAYNNNNRTG 3 cut(s) 363, 471, 1595
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SphI GCATGC 1 cut(s) 629
SsiI CCGC 6 cut(s) 215, 602, 605, 646, 1029, 1399
SspMI CTAG 8 cut(s) 536, 569, 584, 665, 822, 989, 1002, 1271
StyD4I CCNGG 2 cut(s) 693, 908
TaaI ACNGT 7 cut(s) 74, 137, 344, 440, 593, 1077, 1463
TaiI ACGT 3 cut(s) 15, 82, 172
TaqI TCGA 4 cut(s) 76, 951, 1137, 1680
TatI WGTACW 1 cut(s) 137
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 2 cut(s) 634, 1585
Tru1I TTAA 3 cut(s) 333, 782, 1571
Tru9I TTAA 3 cut(s) 333, 782, 1571
TscAI CASTG 4 cut(s) 225, 648, 1080, 1342
TseFI GTSAC 1 cut(s) 1249
TseI GCWGC 4 cut(s) 313, 391, 578, 932
Tsp45I GTSAC 1 cut(s) 1249
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 4 cut(s) 225, 648, 1080, 1342
Van91I CCANNNNNTGG 1 cut(s) 105
XapI RAATTY 3 cut(s) 318, 720, 1490
XbaI TCTAGA 2 cut(s) 535, 568
XceI RCATGY 4 cut(s) 629, 685, 1427, 1564
XmiI GTMKAC 2 cut(s) 76, 882
XspI CTAG 8 cut(s) 536, 569, 584, 665, 822, 989, 1002, 1271
ZrmI AGTACT 1 cut(s) 139
Zsp2I ATGCAT 1 cut(s) 1516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.