Rroxscaffold_1G00044030

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000053
Physical Location & Seq
Reverse (-)
62771264 .. 62773481
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044030.1

Sequence Viewer

Length: 1380 bp
ATGCTGAAGGCTCCGGTTGAAAAGCTTTCACAAAAGTTGGATTTGATTGATAACATTCTGCGCTTAGGAGTTTTCCGACATTTTGAAAATGAGATCCACGAAATTTTACAGCAAATTCACAACAATTCCTATGTCAACTGTGACGACCTGGAGACCGATGATGAGCTCTACATAGTGGCACTCCGTTTTCGATTACTAAGACAACATGGTTATAAAGTTTCATGCACCGACGTGTTTAGGAAGTTCATGGACGCTGATGGAAACTTTAAGGAATCACTTATTGAAGATGTCCTGGGACTATTAATAACTCATGCCTTGTATCAGCCTCTCCGGAAGGGTGTAACTAGACTCGAAGCCAGACATCACTTGTCTGCTTACCCGGATCACAATTCACATAATGAAACACTCTTGAATTTTGCAAAGTTGGATTTCAATCTACTGCAGCAAGTCCATCAGAAAGAACTAAGTGATATTGCAAGTTGGTGGAAGGACTTGGACTTTGCAAACAAGCTGCCGTTTGCAAGAGACAGAGTGGTTGAGTGTTACTTCTGGACGTTGGGAGTCTACTTTGAGCCCCAGTATCACTTTGGTAAGACGACATTTTGCAAAGTTGTTGCCATGACATCCATTATTGACGTCATTTATGACGTGCATGGCACGCTTGAAGAGGCAGAACTTTTTACTGAAGCTATTGAGAGATGGGACATCTCTGCCATGGATATACTGCCCGAGTATATGAAAATCTGTTACCAAGCACTGTTGGATGTCTTTCGTGAAATGGAAGAAAAGCTTGCAATTGAGGGCAACTTATATGCCATCCACTACGCGAGAGAATCAATGAAAATCCTGGTTAGAGCTTACTTCCGAGAAGCCAAATGGTTCCACCAGAAATACACGCCAACCTTGGATGAATATATGTCATTAGCACTAGTTACATCTGGCTACTTTATGCTAGCAACCATATCCTTTCTGGGAATGAGGGATATTGTCACAAGAGACTCCTTTGAGTGGTTGTTCAATAGTCCTAAAATTGTCAAGGCTTCAGAGTTAGTTGGCAGACTCATGGATGACATGGCTTCTCATAAGTTTGAGCAAAAGAGAGGACACGTCGCCTCAGCTGTGGAATGCTACATGAAAGAATATGGTGTCACAGAAGAAGAAGCAAAAGTCGCACTGACTAAACAAGTGGATGATGCTTGGAAGGTCATAAATGAAGAATTGCTGAAGATTAACACTATTCCAAGGCCCCTCCTATTGCGAGTTCTCAATCTCTCGCGGGTGATTGAAGTTGTATACAAGAATGAAGATGGGTATACTAATGCAGGTGGTGTGCTCAAGGGATTTGTGGCTTCTGTGCTTATCAAACCTGTGACTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

459

Amino Acids

53.41

Weight (kDa)

5.64

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 7 - 101 2.3e-30 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 163 - 401 7.3e-101 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 203 - 401 3.5e-60 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AarI CACCTGC 1 cut(s) 1313
AatII GACGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 1313
AccI GTMKAC 3 cut(s) 564, 1293, 1313
AccII CGCG 2 cut(s) 827, 1276
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 1 cut(s) 1276
AclWI GGATC 2 cut(s) 88, 390
AcsI RAATTY 3 cut(s) 102, 114, 412
AcuI CTGAAG 4 cut(s) 26, 705, 1026, 1244
AcyI GRCGYC 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 1008
AflIII ACRYGT 2 cut(s) 231, 1105
AgsI TTSAA 8 cut(s) 20, 86, 284, 412, 433, 665, 1018, 1286
AhlI ACTAGT 1 cut(s) 928
AjiI CACGTC 3 cut(s) 232, 649, 1108
AjnI CCWGG 3 cut(s) 147, 291, 846
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 7 cut(s) 25, 166, 511, 689, 790, 857, 1118
AluI AGCT 7 cut(s) 25, 166, 511, 689, 790, 857, 1118
Alw21I GWGCWC 2 cut(s) 168, 1335
Alw26I GTCTC 3 cut(s) 146, 519, 990
AlwI GGATC 2 cut(s) 88, 390
Ama87I CYCGRG 1 cut(s) 728
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 1 cut(s) 1244
ApeKI GCWGC 2 cut(s) 442, 511
ApoI RAATTY 3 cut(s) 102, 114, 412
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
AseI ATTAAT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 1245
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 1291
AsuNHI GCTAGC 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 728
BanII GRGCYC 2 cut(s) 168, 576
Bbv12I GWGCWC 2 cut(s) 168, 1335
BbvCI CCTCAGC 1 cut(s) 1114
BbvI GCAGC 2 cut(s) 454, 498
BccI CCATC 5 cut(s) 251, 459, 693, 824, 1301
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 3 cut(s) 149, 293, 848
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 146, 519, 990
BcuI ACTAGT 1 cut(s) 928
BfaI CTAG 3 cut(s) 345, 929, 953
BfmI CTRYAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 1313
BisI GCNGC 2 cut(s) 443, 512
BlsI GCNGC 2 cut(s) 444, 513
Bme1390I CCNGG 4 cut(s) 149, 293, 380, 848
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 3 cut(s) 232, 649, 1108
BmgT120I GGNCC 1 cut(s) 1245
BmiI GGNNCC 3 cut(s) 12, 881, 1247
BmrFI CCNGG 4 cut(s) 149, 293, 380, 848
BmrI ACTGGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 1183
BmtI GCTAGC 1 cut(s) 956
BmuI ACTGGG 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 170
Bpu10I CCTNAGC 2 cut(s) 64, 1114
BpuEI CTTGAG 1 cut(s) 1319
BpuMI CCSGG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 432
BsaHI GRCGYC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 4 cut(s) 292, 714, 903, 1241
BsaWI WCCGGW 2 cut(s) 13, 330
Bsc4I CCNNNNNNNGG 1 cut(s) 1008
Bse1I ACTGG 1 cut(s) 577
Bse8I GATNNNNATC 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 3 cut(s) 149, 293, 848
BseDI CCNNGG 4 cut(s) 292, 714, 903, 1241
BseGI GGATG 6 cut(s) 623, 769, 816, 913, 1072, 1195
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 1008
BseMII CTCAG 1 cut(s) 1128
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 2 cut(s) 454, 498
Bsh1236I CGCG 2 cut(s) 827, 1276
BshFI GGCC 1 cut(s) 1246
BsiHKAI GWGCWC 2 cut(s) 168, 1335
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 3 cut(s) 14, 331, 380
BslFI GGGAC 2 cut(s) 309, 716
BslI CCNNNNNNNGG 1 cut(s) 1008
BsmAI GTCTC 3 cut(s) 146, 519, 990
BsmFI GGGAC 2 cut(s) 309, 716
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 1 cut(s) 1246
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 3 cut(s) 168, 576, 1335
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 2 cut(s) 93, 382
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 1 cut(s) 1276
BspANI GGCC 1 cut(s) 1246
BspCNI CTCAG 1 cut(s) 1127
BspEI TCCGGA 1 cut(s) 330
BspFNI CGCG 2 cut(s) 827, 1276
BspLI GGNNCC 3 cut(s) 12, 881, 1247
BspMAI CTGCAG 1 cut(s) 444
BspMI ACCTGC 1 cut(s) 1313
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 88, 390
BspTNI GGTCTC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 4 cut(s) 292, 714, 903, 1241
BssMI GATC 2 cut(s) 93, 382
BssNAI GTATAC 2 cut(s) 1294, 1314
BssNI GRCGYC 1 cut(s) 636
BssT1I CCWWGG 3 cut(s) 714, 903, 1241
Bst1107I GTATAC 2 cut(s) 1294, 1314
Bst2UI CCWGG 3 cut(s) 149, 293, 848
Bst4CI ACNGT 2 cut(s) 140, 759
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 636
BstC8I GCNNGC 3 cut(s) 659, 792, 954
BstDEI CTNAG 4 cut(s) 64, 197, 464, 1114
BstDSI CCRYGG 1 cut(s) 714
BstF5I GGATG 6 cut(s) 623, 769, 816, 913, 1072, 1195
BstFNI CGCG 2 cut(s) 827, 1276
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 96, 385
BstMAI GTCTC 3 cut(s) 146, 519, 990
BstMBI GATC 2 cut(s) 93, 382
BstMWI GCNNNNNNNGC 2 cut(s) 658, 1169
BstNI CCWGG 3 cut(s) 149, 293, 848
BstSCI CCNGG 4 cut(s) 147, 291, 378, 846
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 2 cut(s) 827, 1276
BstV1I GCAGC 2 cut(s) 454, 498
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZ17I GTATAC 2 cut(s) 1294, 1314
BsuRI GGCC 1 cut(s) 1246
BtgI CCRYGG 1 cut(s) 714
BtrI CACGTC 3 cut(s) 232, 649, 1108
BtsCI GGATG 6 cut(s) 623, 769, 816, 913, 1072, 1195
BtsIMutI CAGTG 2 cut(s) 755, 1172
BveI ACCTGC 1 cut(s) 1313
Cac8I GCNNGC 3 cut(s) 659, 792, 954
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 1245
CseI GACGC 1 cut(s) 260
DdeI CTNAG 4 cut(s) 64, 197, 464, 1114
DpnI GATC 2 cut(s) 95, 384
DpnII GATC 2 cut(s) 93, 382
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 3 cut(s) 714, 903, 1241
Eco24I GRGCYC 2 cut(s) 168, 576
Eco31I GGTCTC 1 cut(s) 146
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 4 cut(s) 26, 705, 1026, 1244
Eco88I CYCGRG 1 cut(s) 728
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 1245
EcoRII CCWGG 3 cut(s) 147, 291, 846
EcoT14I CCWWGG 3 cut(s) 714, 903, 1241
EcoT38I GRGCYC 2 cut(s) 168, 576
ErhI CCWWGG 3 cut(s) 714, 903, 1241
FalI AAGNNNNNCTT 2 cut(s) 774, 806
FaqI GGGAC 2 cut(s) 309, 716
FauI CCCGC 1 cut(s) 1269
FblI GTMKAC 3 cut(s) 564, 1293, 1313
Fnu4HI GCNGC 2 cut(s) 443, 512
FokI GGATG 6 cut(s) 610, 776, 803, 920, 1079, 1202
FriOI GRGCYC 2 cut(s) 168, 576
Fsp4HI GCNGC 2 cut(s) 443, 512
FspBI CTAG 3 cut(s) 345, 929, 953
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 443, 512
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 1246
HapII CCGG 3 cut(s) 14, 331, 380
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 636
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 23, 788
HinfI GANTC 6 cut(s) 272, 348, 561, 833, 998, 1059
HpaII CCGG 3 cut(s) 14, 331, 380
HphI GGTGA 1 cut(s) 1291
Hpy166II GTNNAC 4 cut(s) 136, 565, 1294, 1314
Hpy188I TCNGA 4 cut(s) 77, 456, 866, 1045
Hpy188III TCNNGA 4 cut(s) 331, 409, 550, 773
Hpy8I GTNNAC 4 cut(s) 136, 565, 1294, 1314
Hpy99I CGWCG 2 cut(s) 233, 1112
HpyAV CCTTC 3 cut(s) 328, 481, 1195
HpyCH4III ACNGT 2 cut(s) 140, 759
HpyCH4IV ACGT 5 cut(s) 231, 554, 636, 648, 1107
HpyF10VI GCNNNNNNNGC 2 cut(s) 658, 1169
HpyF3I CTNAG 4 cut(s) 64, 197, 464, 1114
HpySE526I ACGT 5 cut(s) 231, 554, 636, 648, 1107
Hsp92I GRCGYC 1 cut(s) 636
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 93, 382
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 454, 498
LweI GCATC 1 cut(s) 1183
MaeI CTAG 3 cut(s) 345, 929, 953
MaeII ACGT 5 cut(s) 231, 554, 636, 648, 1107
MaeIII GTNAC 8 cut(s) 140, 340, 542, 746, 931, 988, 1147, 1369
MalI GATC 2 cut(s) 95, 384
MboI GATC 2 cut(s) 93, 382
MboII GAAGA 8 cut(s) 296, 677, 794, 1166, 1169, 1226, 1237, 1316
MfeI CAATTG 1 cut(s) 795
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 168, 576, 1335
MluCI AATT 8 cut(s) 102, 114, 124, 388, 412, 795, 1029, 1217
MlyI GAGTC 4 cut(s) 342, 570, 992, 1053
MmeI TCCRAC 4 cut(s) 18, 100, 405, 741
MnlI CCTC 7 cut(s) 336, 661, 793, 972, 1094, 1123, 1259
MroI TCCGGA 1 cut(s) 330
MseI TTAA 3 cut(s) 267, 302, 1230
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 1118
MspI CCGG 3 cut(s) 14, 331, 380
MspR9I CCNGG 4 cut(s) 149, 293, 380, 848
MunI CAATTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 3 cut(s) 149, 293, 848
MvnI CGCG 2 cut(s) 827, 1276
MwoI GCNNNNNNNGC 2 cut(s) 658, 1169
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 714
NdeII GATC 2 cut(s) 93, 382
NheI GCTAGC 1 cut(s) 952
NlaIV GGNNCC 3 cut(s) 12, 881, 1247
NmuCI GTSAC 4 cut(s) 140, 988, 1147, 1369
OliI CACNNNNGTG 1 cut(s) 230
PaqCI CACCTGC 1 cut(s) 1313
PctI GAATGC 1 cut(s) 1130
PfeI GAWTC 2 cut(s) 272, 833
PkrI GCNGC 2 cut(s) 444, 513
PleI GAGTC 4 cut(s) 342, 569, 992, 1053
PpsI GAGTC 4 cut(s) 342, 569, 992, 1053
PshBI ATTAAT 1 cut(s) 302
PsiI TTATAA 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 3 cut(s) 147, 291, 846
PspGI CCWGG 3 cut(s) 147, 291, 846
PspN4I GGNNCC 3 cut(s) 12, 881, 1247
PspPI GGNCC 1 cut(s) 1245
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 1118
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 3 cut(s) 267, 302, 1230
SatI GCNGC 2 cut(s) 443, 512
Sau3AI GATC 2 cut(s) 93, 382
Sau96I GGNCC 1 cut(s) 1245
SchI GAGTC 4 cut(s) 342, 570, 992, 1053
ScrFI CCNGG 4 cut(s) 149, 293, 380, 848
SduI GDGCHC 3 cut(s) 168, 576, 1335
SfaNI GCATC 1 cut(s) 1183
SfcI CTRYAG 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 1334
SmoI CTYRAG 1 cut(s) 1334
SpeI ACTAGT 1 cut(s) 928
Sse9I AATT 8 cut(s) 102, 114, 124, 388, 412, 795, 1029, 1217
SsiI CCGC 1 cut(s) 1276
SspMI CTAG 3 cut(s) 345, 929, 953
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 4 cut(s) 147, 291, 378, 846
StyI CCWWGG 3 cut(s) 714, 903, 1241
TaaI ACNGT 2 cut(s) 140, 759
TaiI ACGT 5 cut(s) 234, 557, 639, 651, 1110
TaqI TCGA 2 cut(s) 190, 351
TaqII GACCGA 1 cut(s) 170
TasI AATT 8 cut(s) 102, 114, 124, 388, 412, 795, 1029, 1217
TfiI GAWTC 2 cut(s) 272, 833
Tru1I TTAA 3 cut(s) 267, 302, 1230
Tru9I TTAA 3 cut(s) 267, 302, 1230
TscAI CASTG 2 cut(s) 762, 1179
TseFI GTSAC 4 cut(s) 140, 988, 1147, 1369
TseI GCWGC 2 cut(s) 442, 511
Tsp45I GTSAC 4 cut(s) 140, 988, 1147, 1369
TspDTI ATGAA 9 cut(s) 210, 235, 414, 752, 854, 924, 1148, 1227, 1317
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 2 cut(s) 762, 1179
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 3 cut(s) 102, 114, 412
XcmI CCANNNNNNNNNTGG 2 cut(s) 584, 967
XmiI GTMKAC 3 cut(s) 564, 1293, 1313
XspI CTAG 3 cut(s) 345, 929, 953
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.