Rmu_sc0004042.1_g000001

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004042.1
OG0000053
Physical Location & Seq
Reverse (-)
1 .. 5470
5470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004042.1_g000001.1.cds

Sequence Viewer

Length: 2016 bp
atgtccctcctccggtctcgatcaagcggcgctgcggttaccggtgccgaaccaagcctcgatgtcaagcctctacatgccgttctaagccttcgtcttgatggtgacgccgtccgggatatccaaagggaagttgacgttaaacttgagcaacatgtccgagaactgaaagaagaggtgaaaagaatgctaatagactccttcaaaaatccttcacaacaattggacttggttgatgacattcaacgcttaggcgtgtcctatcattttgaaaatgagattgatgaaattttgaaacaaattcaccacaactactcttatggtagtgaagatgacctttacactactgctctccgttttcgattgctgagacaacaaggttacaatgtttcatgcgataatatgatatatagaggctcgtataatggattccttggtaatgcagatatgttcaacaagtacatggaagcaaatgatcaaaaatttaaggcatctctcttgagtgatgtatcaggactattaagcttgtatgaagccgcccatcttaggatacagggagaagacatacttgaagaggctctagctttcaccaccactcatcttgagtcgatcaaacacagtttaagccctccactttcgaaacaagtagctcattccttaattcagccacttcggaagggcatcacaagggtggaagctagatattacttgtcaatctatcatgaacgcgattcacataacgagactctcctgacttttgcaaagttggatttcaacctactgcagcaagtccatcaaaaggaactatgtgaaattacaaggtggtggaaggacttggacgtgagaaacaccttaccgtttataagagatagggttaccgaagcttacttcggctgggttttgtcagtgtacttcgaacctcaatattcctttgctaggaggacatcatgcaaagtcaccgccatgacatctattatagatgacatttatgatgcctatggcacacttgaagaactggagctctttactaaagctattcaaaggtgggacgtctgtgccatagatctgttacctgcagattatatgaaagtctgttataaggcactgttagaagtctacactgaaattgaaaaagagcttgcaaaggaaagaaagttgtatcgaatccactacgccagagaagctatgaaaaagcaagctgaaaattacttccttgaagctaaatggttgcaccagaaacacataccaacaatggatgaatacatggccatagctttaatgaccacaggcttccctctgctaataacaacatcttttgttggaatgggagatattgctacacaagactccttcgattggttggccacttatcccaaggctgtaaaagcggctgcggtagttggccgactcatggatgacatagcggaccataagtttgagcaaaagagaggacatgttataacctcagctgtagagtgctacatgaaagaatatggtgccacagaagaagaagcaataatcgaattgcgtaggaaagtgagtgacccatggaaggacttaaatgaatcgttcctcctccctaatgttgttccgaggccattgcttactcgaattattaactttgcttgtgccacggatgttctatacaagtacggagacgattatatgaaagtctgttataaggcactgttagaagtctacactgaaattgaaaaagagcttgcaaaggaaagaaagttgtatcgaatccactacgccagagaagctatgaaaaagcaagctgaaaattacttccttgaagctaaatggttgcaccagaaacacataccaacaatggatgaatacatggccatagctttaatgaccacaggcttccctctgctaataacaacatcttttgttggaatgggagatattgctacacaagactccttcgattggttggccacttatcccaaggctgtaaaagcggctgcggtagctggccgactcatggatgacatagcggaccataag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

672

Amino Acids

77.72

Weight (kDa)

5.78

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 863, 1098, 1460, 1680
AatII GACGTC 1 cut(s) 1053
Acc36I ACCTGC 1 cut(s) 1081
AccB1I GGYRCC 2 cut(s) 44, 1496
AccI GTMKAC 2 cut(s) 1116, 1698
AccII CGCG 1 cut(s) 729
AcoI YGGCCR 6 cut(s) 1266, 1362, 1402, 1848, 1944, 1984
AcsI RAATTY 3 cut(s) 288, 300, 482
AcyI GRCGYC 2 cut(s) 108, 1050
AfaI GTAC 3 cut(s) 461, 911, 1652
AfiI CCNNNNNNNGG 9 cut(s) 12, 546, 799, 936, 1356, 1411, 1552, 1938, 1993
AflIII ACRYGT 2 cut(s) 154, 1453
AgeI ACCGGT 1 cut(s) 41
AjiI CACGTC 1 cut(s) 841
AleI CACNNNNGTG 1 cut(s) 689
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 4 cut(s) 21, 364, 737, 1650
AoxI GGCC 7 cut(s) 1266, 1362, 1402, 1595, 1848, 1944, 1984
ApeKI GCWGC 4 cut(s) 32, 784, 1391, 1973
ApoI RAATTY 3 cut(s) 288, 300, 482
ArsI GACNNNNNNTTYG 2 cut(s) 1418, 1450
AsiGI ACCGGT 1 cut(s) 41
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 1426, 2008
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 5 cut(s) 116, 190, 296, 580, 949
AsuII TTCGAA 2 cut(s) 638, 915
AvaII GGWCC 2 cut(s) 1426, 2008
BalI TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
BanI GGYRCC 2 cut(s) 44, 1496
BanII GRGCYC 1 cut(s) 1023
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 1023
BbvCI CCTCAGC 1 cut(s) 1465
BbvI GCAGC 4 cut(s) 19, 796, 1378, 1960
BccI CCATC 3 cut(s) 95, 549, 801
BceAI ACGGC 2 cut(s) 65, 95
BcgI CGANNNNNNTGC 2 cut(s) 1582, 1616
BciVI GTATCC 1 cut(s) 543
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 4 cut(s) 21, 364, 737, 1650
BfaI CTAG 3 cut(s) 581, 699, 936
BfmI CTRYAG 3 cut(s) 782, 1074, 1470
BfoI RGCGCY 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 1081
BfuI GTATCC 1 cut(s) 543
BglII AGATCT 1 cut(s) 1063
BisI GCNGC 8 cut(s) 28, 33, 537, 785, 1389, 1392, 1971, 1974
BlsI GCNGC 8 cut(s) 29, 34, 538, 786, 1390, 1393, 1972, 1975
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 1426, 2008
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 2 cut(s) 1426, 2008
BmiI GGNNCC 2 cut(s) 46, 1498
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 500, 690, 982
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 1037
Bpu10I CCTNAGC 2 cut(s) 250, 1465
Bpu14I TTCGAA 2 cut(s) 638, 915
BpuEI CTTGAG 3 cut(s) 167, 520, 623
BpuMI CCSGG 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 108, 1050
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 6 cut(s) 433, 1374, 1547, 1592, 1632, 1956
BsaWI WCCGGW 2 cut(s) 12, 41
Bsc4I CCNNNNNNNGG 9 cut(s) 12, 546, 799, 936, 1356, 1411, 1552, 1938, 1993
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 1020
Bse3DI GCAATG 1 cut(s) 1598
BseDI CCNNGG 6 cut(s) 433, 1374, 1547, 1592, 1632, 1956
BseGI GGATG 5 cut(s) 1261, 1420, 1642, 1843, 2002
BseLI CCNNNNNNNGG 9 cut(s) 12, 546, 799, 936, 1356, 1411, 1552, 1938, 1993
BseMI GCAATG 1 cut(s) 1598
BseMII CTCAG 2 cut(s) 359, 1479
BseNI ACTGG 1 cut(s) 1020
BseRI GAGGAG 1 cut(s) 1565
BseXI GCAGC 4 cut(s) 19, 796, 1378, 1960
BseYI CCCAGC 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 7 cut(s) 1268, 1364, 1404, 1597, 1850, 1946, 1986
BshNI GGYRCC 2 cut(s) 44, 1496
BshTI ACCGGT 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 1023
BsiSI CCGG 3 cut(s) 13, 42, 115
BslFI GGGAC 1 cut(s) 1061
BslI CCNNNNNNNGG 9 cut(s) 12, 546, 799, 936, 1356, 1411, 1552, 1938, 1993
BsmAI GTCTC 4 cut(s) 21, 364, 737, 1650
BsmBI CGTCTC 1 cut(s) 1650
BsmFI GGGAC 1 cut(s) 1061
BsmI GAATGC 1 cut(s) 192
BsnI GGCC 7 cut(s) 1268, 1364, 1404, 1597, 1850, 1946, 1986
Bso31I GGTCTC 1 cut(s) 21
Bsp119I TTCGAA 2 cut(s) 638, 915
Bsp1286I GDGCHC 1 cut(s) 1023
Bsp143I GATC 4 cut(s) 20, 475, 609, 1063
Bsp19I CCATGG 1 cut(s) 1547
BspANI GGCC 7 cut(s) 1268, 1364, 1404, 1597, 1850, 1946, 1986
BspCNI CTCAG 2 cut(s) 360, 1478
BspFNI CGCG 1 cut(s) 729
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 46, 1498
BspMAI CTGCAG 2 cut(s) 786, 1078
BspMI ACCTGC 1 cut(s) 1081
BspT104I TTCGAA 2 cut(s) 638, 915
BspT107I GGYRCC 2 cut(s) 44, 1496
BspTNI GGTCTC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 1598
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 1020
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 6 cut(s) 433, 1374, 1547, 1592, 1632, 1956
BssMI GATC 4 cut(s) 20, 475, 609, 1063
BssNI GRCGYC 2 cut(s) 108, 1050
BssT1I CCWWGG 4 cut(s) 433, 1374, 1547, 1956
Bst4CI ACNGT 4 cut(s) 620, 858, 1107, 1689
Bst6I CTCTTC 2 cut(s) 168, 567
BstACI GRCGYC 2 cut(s) 108, 1050
BstBI TTCGAA 2 cut(s) 638, 915
BstC8I GCNNGC 5 cut(s) 1140, 1197, 1722, 1779, 1984
BstDEI CTNAG 5 cut(s) 86, 250, 368, 545, 1465
BstDSI CCRYGG 2 cut(s) 1547, 1632
BstEII GGTNACC 2 cut(s) 37, 874
BstENI CCTNNNNNAGG 1 cut(s) 934
BstF5I GGATG 5 cut(s) 1261, 1420, 1642, 1843, 2002
BstFNI CGCG 1 cut(s) 729
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 23, 478, 612, 1066
BstMAI GTCTC 4 cut(s) 21, 364, 737, 1650
BstMBI GATC 4 cut(s) 20, 475, 609, 1063
BstMWI GCNNNNNNNGC 5 cut(s) 1181, 1385, 1763, 1967, 1979
BstNSI RCATGY 3 cut(s) 80, 158, 1457
BstPI GGTNACC 2 cut(s) 37, 874
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 3 cut(s) 782, 1074, 1470
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 4 cut(s) 19, 796, 1378, 1960
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 7 cut(s) 1268, 1364, 1404, 1597, 1850, 1946, 1986
BtgI CCRYGG 2 cut(s) 1547, 1632
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 5 cut(s) 1261, 1420, 1642, 1843, 2002
BtsIMutI CAGTG 5 cut(s) 912, 1103, 1119, 1685, 1701
BveI ACCTGC 1 cut(s) 1081
Cac8I GCNNGC 5 cut(s) 1140, 1197, 1722, 1779, 1984
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 1426, 2008
CseI GACGC 1 cut(s) 116
Csp6I GTAC 3 cut(s) 460, 910, 1651
CspAI ACCGGT 1 cut(s) 41
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviQI GTAC 3 cut(s) 460, 910, 1651
DdeI CTNAG 5 cut(s) 86, 250, 368, 545, 1465
DpnI GATC 4 cut(s) 22, 477, 611, 1065
DpnII GATC 4 cut(s) 20, 475, 609, 1063
EaeI YGGCCR 6 cut(s) 1266, 1362, 1402, 1848, 1944, 1984
Eam1104I CTCTTC 2 cut(s) 168, 567
EarI CTCTTC 2 cut(s) 168, 567
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 4 cut(s) 433, 1374, 1547, 1956
Eco24I GRGCYC 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 2 cut(s) 1426, 2008
Eco53kI GAGCTC 1 cut(s) 1021
Eco91I GGTNACC 2 cut(s) 37, 874
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 934
EcoO65I GGTNACC 2 cut(s) 37, 874
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 4 cut(s) 433, 1374, 1547, 1956
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 4 cut(s) 433, 1374, 1547, 1956
Esp3I CGTCTC 1 cut(s) 1650
FalI AAGNNNNNCTT 4 cut(s) 321, 353, 552, 584
FaqI GGGAC 1 cut(s) 1061
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 2 cut(s) 1116, 1698
Fnu4HI GCNGC 8 cut(s) 28, 33, 537, 785, 1389, 1392, 1971, 1974
FokI GGATG 5 cut(s) 1268, 1427, 1649, 1850, 2009
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 8 cut(s) 28, 33, 537, 785, 1389, 1392, 1971, 1974
FspBI CTAG 3 cut(s) 581, 699, 936
GlaI GCGC 1 cut(s) 31
GluI GCNGC 8 cut(s) 28, 33, 537, 785, 1389, 1392, 1971, 1974
GsaI CCCAGC 1 cut(s) 898
GsuI CTGGAG 1 cut(s) 1037
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 7 cut(s) 1268, 1364, 1404, 1597, 1850, 1946, 1986
HapII CCGG 3 cut(s) 13, 42, 115
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 108, 1050
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 523, 882
HpaII CCGG 3 cut(s) 13, 42, 115
HphI GGTGA 5 cut(s) 116, 190, 296, 580, 949
Hpy166II GTNNAC 4 cut(s) 136, 910, 1117, 1699
Hpy188I TCNGA 3 cut(s) 161, 675, 1593
Hpy188III TCNNGA 7 cut(s) 18, 98, 499, 513, 602, 722, 751
Hpy8I GTNNAC 4 cut(s) 136, 910, 1117, 1699
HpyAV CCTTC 8 cut(s) 101, 211, 222, 670, 823, 1360, 1546, 1942
HpyCH4III ACNGT 4 cut(s) 620, 858, 1107, 1689
HpyCH4IV ACGT 3 cut(s) 138, 840, 1050
HpyCH4V TGCA 9 cut(s) 443, 761, 784, 951, 1076, 1142, 1231, 1724, 1813
HpyF10VI GCNNNNNNNGC 5 cut(s) 1181, 1385, 1763, 1967, 1979
HpyF3I CTNAG 5 cut(s) 86, 250, 368, 545, 1465
HpySE526I ACGT 3 cut(s) 138, 840, 1050
Hsp92I GRCGYC 2 cut(s) 108, 1050
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 4 cut(s) 20, 475, 609, 1063
LmnI GCTCC 1 cut(s) 1018
Lsp1109I GCAGC 4 cut(s) 19, 796, 1378, 1960
LweI GCATC 3 cut(s) 500, 690, 982
MaeI CTAG 3 cut(s) 581, 699, 936
MaeII ACGT 3 cut(s) 138, 840, 1050
MaeIII GTNAC 7 cut(s) 37, 104, 380, 874, 955, 1068, 1541
MalI GATC 4 cut(s) 22, 477, 611, 1065
MboI GATC 4 cut(s) 20, 475, 609, 1063
MboII GAAGA 7 cut(s) 185, 341, 572, 584, 1022, 1517, 1520
MfeI CAATTG 1 cut(s) 221
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 1 cut(s) 1023
MlsI TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
MluNI TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
MlyI GAGTC 7 cut(s) 191, 614, 739, 1340, 1401, 1922, 1983
MmeI TCCRAC 3 cut(s) 747, 1300, 1882
Mox20I TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
MscI TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
MseI TTAA 9 cut(s) 141, 486, 521, 623, 659, 1277, 1559, 1617, 1859
MslI CAYNNNNRTG 2 cut(s) 689, 962
Msp20I TGGCCA 4 cut(s) 1268, 1364, 1850, 1946
MspA1I CMGCKG 1 cut(s) 1469
MspI CCGG 3 cut(s) 13, 42, 115
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 192
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 5 cut(s) 1181, 1385, 1763, 1967, 1979
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 1547
NdeII GATC 4 cut(s) 20, 475, 609, 1063
NlaIV GGNNCC 2 cut(s) 46, 1498
NmuCI GTSAC 3 cut(s) 104, 955, 1541
NspI RCATGY 3 cut(s) 80, 158, 1457
NspV TTCGAA 2 cut(s) 638, 915
OliI CACNNNNGTG 1 cut(s) 689
PagI TCATGA 1 cut(s) 721
PciI ACATGT 2 cut(s) 154, 1453
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 5 cut(s) 429, 731, 1164, 1565, 1746
PflFI GACNNNGTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 41
PkrI GCNGC 8 cut(s) 29, 34, 538, 786, 1390, 1393, 1972, 1975
PleI GAGTC 7 cut(s) 191, 613, 739, 1340, 1401, 1922, 1983
PpsI GAGTC 7 cut(s) 191, 613, 739, 1340, 1401, 1922, 1983
PscI ACATGT 2 cut(s) 154, 1453
PsiI TTATAA 4 cut(s) 863, 1098, 1460, 1680
Psp124BI GAGCTC 1 cut(s) 1023
PspEI GGTNACC 2 cut(s) 37, 874
PspFI CCCAGC 1 cut(s) 894
PspN4I GGNNCC 2 cut(s) 46, 1498
PspPI GGNCC 2 cut(s) 1426, 2008
PstI CTGCAG 2 cut(s) 786, 1078
PsuI RGATCY 1 cut(s) 1063
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 1469
RsaI GTAC 3 cut(s) 461, 911, 1652
RsaNI GTAC 3 cut(s) 460, 910, 1651
RseI CAYNNNNRTG 2 cut(s) 689, 962
SacI GAGCTC 1 cut(s) 1023
SaqAI TTAA 9 cut(s) 141, 486, 521, 623, 659, 1277, 1559, 1617, 1859
SatI GCNGC 8 cut(s) 28, 33, 537, 785, 1389, 1392, 1971, 1974
Sau3AI GATC 4 cut(s) 20, 475, 609, 1063
Sau96I GGNCC 2 cut(s) 1426, 2008
SchI GAGTC 7 cut(s) 191, 614, 739, 1340, 1401, 1922, 1983
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 1023
SfaNI GCATC 3 cut(s) 500, 690, 982
SfcI CTRYAG 3 cut(s) 782, 1074, 1470
SfuI TTCGAA 2 cut(s) 638, 915
SinI GGWCC 2 cut(s) 1426, 2008
SmiMI CAYNNNNRTG 2 cut(s) 689, 962
SmlI CTYRAG 3 cut(s) 146, 499, 602
SmoI CTYRAG 3 cut(s) 146, 499, 602
SspI AATATT 1 cut(s) 926
SspMI CTAG 3 cut(s) 581, 699, 936
SstI GAGCTC 1 cut(s) 1023
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 4 cut(s) 433, 1374, 1547, 1956
TaaI ACNGT 4 cut(s) 620, 858, 1107, 1689
TaiI ACGT 3 cut(s) 141, 843, 1053
TatI WGTACW 2 cut(s) 459, 909
TauI GCSGC 4 cut(s) 30, 539, 1391, 1973
TfiI GAWTC 5 cut(s) 429, 731, 1164, 1565, 1746
Tru1I TTAA 9 cut(s) 141, 486, 521, 623, 659, 1277, 1559, 1617, 1859
Tru9I TTAA 9 cut(s) 141, 486, 521, 623, 659, 1277, 1559, 1617, 1859
TscAI CASTG 5 cut(s) 912, 1110, 1126, 1692, 1708
TseFI GTSAC 3 cut(s) 104, 955, 1541
TseI GCWGC 4 cut(s) 32, 784, 1391, 1973
Tsp45I GTSAC 3 cut(s) 104, 955, 1541
TspGWI ACGGA 3 cut(s) 344, 1649, 1668
TspRI CASTG 5 cut(s) 912, 1110, 1126, 1692, 1708
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 1426, 2008
XagI CCTNNNNNAGG 1 cut(s) 934
XapI RAATTY 3 cut(s) 288, 300, 482
XceI RCATGY 3 cut(s) 80, 158, 1457
XmiI GTMKAC 2 cut(s) 1116, 1698
XspI CTAG 3 cut(s) 581, 699, 936
ZraI GACGTC 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.