RchiOBHm_Chr5g0044191

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000053
Physical Location & Seq
Reverse (-)
39433790 .. 39436236
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32240

Sequence Viewer

Length: 1698 bp
ATGTCTATGGCTACAGATCCTTCCCCATCAAGTCAAGTACCACAAATTGCTAAGCCTGTAATTGTTCGCCAGACAGCGAATTTTCAACCAAGCATTTGGGGAGATCAGTTCATCAACTATGATTCTCAAGACATTAAGACTGAGGCCCTTTGGCAACAAGAAGTCGAGGGACTGAAAGAAGTAGTGAAGAGAGAAGTATTTACAAATGGGAAAGGTGATTTTTCCCATGAACTCAAGTTGATCGATGCAATCCAACGCCTTGGCGTGGCATACCATTTTGAACAAGAAATAGAATATGCACTGCAACACATCCATGCTACATATCATGATCAGGATCACTACCGTGAAAATGGCGATCTTTACACTACTGCGCTATGTTTTCGATTGCTAAGGCAACATGGATATGATATCTCATCTGATATATTCAACAAGTTCAAAGATGCAAATGGTAACTTCAAAGAAGGCTTAGTTGTCGATGGGTCAGCTATGCTGAGCCTCTACGAAGCTGCACATCTTAAGGTTCATGGAGAAGATATACTAGAAGAGGCTCTTGTTTTCACCACTACTCACCTCGAGTCCGCAAAATCCAATGCGTGCTATGGAGTACAAATGACTGAACAAATCACTCAAGCCTTGGCGAGACCTCTGCGAAAAAGTCTAGAGAGGATATGTGCCAAGCGTCACATGTCAATTTACCAACATGAAGATGAAGCCTCACTCATCAACCACAATGAAGCTTTATTGAGACTTGCAAAGTTGGATTTCAATCTTGTTCAGTCTTTACACCAAAAAGAGTTGTGGTGGAAAGAACTAGACTTTGAAAGAAAATTGCCTTTTGCAAGAGACAGGAAGGTGGAGTTGTTCTTTTGGATAGTGGGAGTATATTTTGAACCCCAGTACTCTATTGGCAGAACCATTATGACAAAAGTGTCTATCCTCCTAACTGTTTTGGATGATATATATGACGCATATGGTACATTTGAAGAACTCGTGATCTTTACTGAAGCAATTGACAGGTGGGATGTCAAATGCATAGATGAACTCCCGGACTATTTGAAAATATTCTATCATGAACTTTTGAATCTTTTCAATGATATTGACAAAGTGATGTCAAAGGAAGGAAAATCTTACCGAGTTTGCTACGCAATACAAGCTATGAAAAATCAAGCTCGATCATATTTCAACGAGGCCCAATGGTTGCACGAAGGACGCACTCCAAGCATTGAGGAGTATATGAGGGTTGCAACAGTTTCTATTAGTTACACTTTTCTAACAACCATTTCATTACTCGGCATGGGAGATATTGTAACGAAGGATGCATTTGAGTGGTTGTTGAATGACCCGAAAATTGTTAGAGCTTCCAATATCATCTTTAGGCTTATGGATGACATTGTTTCCACCAAGTTTGAGAAAGAGAGAGAGCATGCACCTTCTAGCATTGATTGCTATATGAAGCAATATAGTGTTTCAGAGCAAGAGACAATTGATATTTTCAACAAACAAATTGTGGAATCATGGAAGGATATAAACGAGGAGTTTCTTAAACCAACCGCCGTGCCAATATCGGTTCTTATGCGCGTTCTCAATTTAACAAGAGTTGCGGATCTCCTTTATAAGGGAGAAGATGGATTCACACGGGTTGGGAAGATGACCAAAGATAGTGTTGCTGCAGTTATTATCGATCCAGTGCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

565

Amino Acids

65.4

Weight (kDa)

5.25

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 212 3.2e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 269 - 508 2.5e-96 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 309 - 508 5.2e-57 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1614
AasI GACNNNNNNGTC 1 cut(s) 928
AccII CGCG 1 cut(s) 1578
AciI CCGC 3 cut(s) 579, 1551, 1601
AclWI GGATC 4 cut(s) 11, 342, 1611, 1676
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 4 cut(s) 39, 606, 899, 976
AfiI CCNNNNNNNGG 2 cut(s) 265, 1615
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 684
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 6 cut(s) 485, 506, 737, 1154, 1169, 1358
AluI AGCT 6 cut(s) 485, 506, 737, 1154, 1169, 1358
Alw26I GTCTC 4 cut(s) 634, 739, 837, 1472
AlwI GGATC 4 cut(s) 11, 342, 1611, 1676
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 144, 1188
ApeKI GCWGC 2 cut(s) 506, 1667
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 2 cut(s) 1061, 1085
AspLEI GCGC 2 cut(s) 373, 1578
AspS9I GGNCC 2 cut(s) 145, 1189
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 3 cut(s) 227, 550, 560
AvaI CYCGRG 1 cut(s) 572
BauI CACGAG 1 cut(s) 989
BbvI GCAGC 2 cut(s) 493, 1654
BccI CCATC 3 cut(s) 34, 470, 1619
BceAI ACGGC 1 cut(s) 1538
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 4 cut(s) 634, 739, 837, 1472
BfaI CTAG 4 cut(s) 539, 659, 812, 1434
BfmI CTRYAG 2 cut(s) 12, 1668
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 2 cut(s) 507, 1668
BlpI GCTNAGC 2 cut(s) 51, 491
BlsI GCNGC 2 cut(s) 508, 1669
BmcAI AGTACT 1 cut(s) 899
Bme1390I CCNGG 1 cut(s) 1046
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 145, 1189
BmrFI CCNGG 1 cut(s) 1046
BmrI ACTGGG 1 cut(s) 889
BmsI GCATC 3 cut(s) 235, 430, 1306
BmuI ACTGGG 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 389
Bpu1102I GCTNAGC 2 cut(s) 51, 491
BpuEI CTTGAG 3 cut(s) 111, 218, 612
BpuMI CCSGG 1 cut(s) 1046
Bsa29I ATCGAT 2 cut(s) 243, 1680
BsaBI GATNNNNATC 2 cut(s) 333, 765
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 2 cut(s) 259, 633
BsaXI ACNNNNNCTCC 2 cut(s) 1290, 1320
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 1615
Bse1I ACTGG 2 cut(s) 895, 1685
Bse8I GATNNNNATC 2 cut(s) 333, 765
BseCI ATCGAT 2 cut(s) 243, 1680
BseDI CCNNGG 2 cut(s) 259, 633
BseGI GGATG 5 cut(s) 309, 958, 1027, 1321, 1390
BseJI GATNNNNATC 2 cut(s) 333, 765
BseLI CCNNNNNNNGG 2 cut(s) 265, 1615
BseMII CTCAG 2 cut(s) 132, 482
BseNI ACTGG 2 cut(s) 895, 1685
BseRI GAGGAG 2 cut(s) 1241, 1547
BseXI GCAGC 2 cut(s) 493, 1654
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 1578
BshFI GGCC 2 cut(s) 146, 1190
BshVI ATCGAT 2 cut(s) 243, 1680
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 1046
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 265, 1615
BsmAI GTCTC 4 cut(s) 634, 739, 837, 1472
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 2 cut(s) 146, 1190
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 1 cut(s) 572
Bsp1720I GCTNAGC 2 cut(s) 51, 491
BspACI CCGC 3 cut(s) 579, 1551, 1601
BspANI GGCC 2 cut(s) 146, 1190
BspCNI CTCAG 2 cut(s) 133, 483
BspDI ATCGAT 2 cut(s) 243, 1680
BspFNI CGCG 1 cut(s) 1578
BspHI TCATGA 2 cut(s) 325, 1069
BspMAI CTGCAG 1 cut(s) 1672
BspPI GGATC 4 cut(s) 11, 342, 1611, 1676
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 634
BsrI ACTGG 2 cut(s) 895, 1685
BssECI CCNNGG 2 cut(s) 259, 633
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 2 cut(s) 259, 633
Bst2BI CACGAG 1 cut(s) 989
Bst4CI ACNGT 4 cut(s) 344, 946, 1249, 1695
Bst6I CTCTTC 2 cut(s) 182, 537
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 1443
BstC8I GCNNGC 2 cut(s) 595, 1425
BstDEI CTNAG 5 cut(s) 51, 141, 389, 466, 491
BstENI CCTNNNNNAGG 1 cut(s) 1613
BstF5I GGATG 5 cut(s) 309, 958, 1027, 1321, 1390
BstFNI CGCG 1 cut(s) 1578
BstHHI GCGC 2 cut(s) 373, 1578
BstMAI GTCTC 4 cut(s) 634, 739, 837, 1472
BstMWI GCNNNNNNNGC 3 cut(s) 1151, 1218, 1443
BstNSI RCATGY 2 cut(s) 688, 1427
BstSCI CCNGG 1 cut(s) 1044
BstSFI CTRYAG 2 cut(s) 12, 1668
BstUI CGCG 1 cut(s) 1578
BstV1I GCAGC 2 cut(s) 493, 1654
BstX2I RGATCY 2 cut(s) 16, 1603
BstXI CCANNNNNNTGG 2 cut(s) 96, 260
BstYI RGATCY 2 cut(s) 16, 1603
Bsu15I ATCGAT 2 cut(s) 243, 1680
BsuRI GGCC 2 cut(s) 146, 1190
BsuTUI ATCGAT 2 cut(s) 243, 1680
BtsCI GGATG 5 cut(s) 309, 958, 1027, 1321, 1390
BtsI GCAGTG 1 cut(s) 299
BtsIMutI CAGTG 3 cut(s) 299, 1691, 1692
Cac8I GCNNGC 2 cut(s) 595, 1425
CciI TCATGA 2 cut(s) 325, 1069
CfoI GCGC 2 cut(s) 373, 1578
Cfr13I GGNCC 2 cut(s) 145, 1189
ClaI ATCGAT 2 cut(s) 243, 1680
CseI GACGC 3 cut(s) 668, 974, 1218
Csp6I GTAC 4 cut(s) 38, 605, 898, 975
CspCI CAANNNNNGTGG 2 cut(s) 1387, 1422
CviQI GTAC 4 cut(s) 38, 605, 898, 975
DdeI CTNAG 5 cut(s) 51, 141, 389, 466, 491
DrdI GACNNNNNNGTC 1 cut(s) 928
DseDI GACNNNNNNGTC 1 cut(s) 928
Eam1104I CTCTTC 2 cut(s) 182, 537
EarI CTCTTC 2 cut(s) 182, 537
Eco130I CCWWGG 2 cut(s) 259, 633
Eco31I GGTCTC 1 cut(s) 634
Eco32I GATATC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 1 cut(s) 572
EcoNI CCTNNNNNAGG 1 cut(s) 1613
EcoO109I RGGNCCY 1 cut(s) 145
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 259, 633
EcoT22I ATGCAT 2 cut(s) 1034, 1321
ErhI CCWWGG 2 cut(s) 259, 633
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 183
FauNDI CATATG 1 cut(s) 970
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 507, 1668
FokI GGATG 5 cut(s) 296, 965, 1034, 1328, 1397
Fsp4HI GCNGC 2 cut(s) 507, 1668
FspBI CTAG 4 cut(s) 539, 659, 812, 1434
GlaI GCGC 2 cut(s) 372, 1577
GluI GCNGC 2 cut(s) 507, 1668
HaeIII GGCC 2 cut(s) 146, 1190
HapII CCGG 1 cut(s) 1046
HgaI GACGC 3 cut(s) 668, 974, 1218
HhaI GCGC 2 cut(s) 373, 1578
Hin6I GCGC 2 cut(s) 371, 1576
HinP1I GCGC 2 cut(s) 371, 1576
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 5 cut(s) 122, 575, 1081, 1511, 1629
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 3 cut(s) 227, 550, 560
Hpy188I TCNGA 2 cut(s) 418, 1471
Hpy188III TCNNGA 6 cut(s) 128, 326, 332, 659, 991, 1070
HpyAV CCTTC 8 cut(s) 30, 455, 844, 1112, 1199, 1306, 1440, 1513
HpyCH4III ACNGT 4 cut(s) 344, 946, 1249, 1695
HpyF10VI GCNNNNNNNGC 3 cut(s) 1151, 1218, 1443
HpyF3I CTNAG 5 cut(s) 51, 141, 389, 466, 491
HspAI GCGC 2 cut(s) 371, 1576
Ksp22I TGATCA 1 cut(s) 328
LpnPI CCDG 7 cut(s) 69, 83, 317, 832, 908, 1000, 1059
Lsp1109I GCAGC 2 cut(s) 493, 1654
LweI GCATC 3 cut(s) 235, 430, 1306
MaeI CTAG 4 cut(s) 539, 659, 812, 1434
MaeIII GTNAC 4 cut(s) 449, 680, 1259, 1306
MboII GAAGA 7 cut(s) 199, 542, 554, 716, 995, 1634, 1657
MfeI CAATTG 2 cut(s) 1008, 1482
MflI RGATCY 2 cut(s) 16, 1603
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 2 cut(s) 277, 738
Mph1103I ATGCAT 2 cut(s) 1034, 1321
MroXI GAANNNNTTC 2 cut(s) 1061, 1085
MseI TTAA 4 cut(s) 135, 516, 1542, 1589
MslI CAYNNNNRTG 5 cut(s) 312, 342, 402, 705, 1324
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 1 cut(s) 1046
MspR9I CCNGG 1 cut(s) 1046
MunI CAATTG 2 cut(s) 1008, 1482
MvnI CGCG 1 cut(s) 1578
MwoI GCNNNNNNNGC 3 cut(s) 1151, 1218, 1443
NciI CCSGG 1 cut(s) 1046
NdeI CATATG 1 cut(s) 970
NmeAIII GCCGAG 1 cut(s) 1269
NmuCI GTSAC 1 cut(s) 680
NsiI ATGCAT 2 cut(s) 1034, 1321
NspI RCATGY 2 cut(s) 688, 1427
OliI CACNNNNGTG 1 cut(s) 342
PaeI GCATGC 1 cut(s) 1427
PaeR7I CTCGAG 1 cut(s) 572
PagI TCATGA 2 cut(s) 325, 1069
PciI ACATGT 1 cut(s) 684
PdmI GAANNNNTTC 2 cut(s) 1061, 1085
PfeI GAWTC 4 cut(s) 122, 1081, 1511, 1629
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 2 cut(s) 508, 1669
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PscI ACATGT 1 cut(s) 684
PsiI TTATAA 1 cut(s) 1614
PspPI GGNCC 2 cut(s) 145, 1189
PspXI VCTCGAGB 1 cut(s) 572
PstI CTGCAG 1 cut(s) 1672
PsuI RGATCY 2 cut(s) 16, 1603
RsaI GTAC 4 cut(s) 39, 606, 899, 976
RsaNI GTAC 4 cut(s) 38, 605, 898, 975
RseI CAYNNNNRTG 5 cut(s) 312, 342, 402, 705, 1324
SaqAI TTAA 4 cut(s) 135, 516, 1542, 1589
SatI GCNGC 2 cut(s) 507, 1668
Sau96I GGNCC 2 cut(s) 145, 1189
ScaI AGTACT 1 cut(s) 899
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 1 cut(s) 1046
SfaNI GCATC 3 cut(s) 235, 430, 1306
SfcI CTRYAG 2 cut(s) 12, 1668
Sfr274I CTCGAG 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 5 cut(s) 312, 342, 402, 705, 1324
SmlI CTYRAG 5 cut(s) 126, 233, 515, 572, 627
SmoI CTYRAG 5 cut(s) 126, 233, 515, 572, 627
SphI GCATGC 1 cut(s) 1427
SsiI CCGC 3 cut(s) 579, 1551, 1601
SspI AATATT 1 cut(s) 1062
SspMI CTAG 4 cut(s) 539, 659, 812, 1434
StyD4I CCNGG 1 cut(s) 1044
StyI CCWWGG 2 cut(s) 259, 633
TaaI ACNGT 4 cut(s) 344, 946, 1249, 1695
TaqI TCGA 7 cut(s) 165, 243, 382, 474, 573, 1171, 1680
TatI WGTACW 2 cut(s) 604, 897
TfiI GAWTC 4 cut(s) 122, 1081, 1511, 1629
Tru1I TTAA 4 cut(s) 135, 516, 1542, 1589
Tru9I TTAA 4 cut(s) 135, 516, 1542, 1589
TscAI CASTG 3 cut(s) 306, 1692, 1698
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 2 cut(s) 506, 1667
Tsp45I GTSAC 1 cut(s) 680
TspRI CASTG 3 cut(s) 306, 1692, 1698
Vha464I CTTAAG 1 cut(s) 515
XagI CCTNNNNNAGG 1 cut(s) 1613
XapI RAATTY 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 2 cut(s) 688, 1427
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XhoI CTCGAG 1 cut(s) 572
XmnI GAANNNNTTC 2 cut(s) 1061, 1085
XspI CTAG 4 cut(s) 539, 659, 812, 1434
ZrmI AGTACT 1 cut(s) 899
Zsp2I ATGCAT 2 cut(s) 1034, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.