RchiOBHm_Chr1g0326051

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000053
Physical Location & Seq
Forward (+)
14222400 .. 14225608
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55570

Sequence Viewer

Length: 1746 bp
ATGGATCAAGCACGAACAGCAAATGCCAGTAGCACTCTTGATGTTGATCGACGTTCAGCTAATTTTTCTCCCAGCATTTGGGGCGAGTATTTTCTGTCATATGCATCGATGGAAACTGCAGATATTGAATCCAACCAAAGTATCCAAGAACTGAAGGAAGAAGTGAAGAGGATGCTAGTGAGTTCTTTGTCTTTACAAAGATTACACTTGATTGATTACATTCAGCGCTTGGGGTTGTCCTACCATTTTGAGGATGAGATTTACCAACTTTTACATCAAATTTACAACCGGACCTGTTCTTCTTATGATGATGATGATGATGACGACGACGGCGACCTTCACACAGTTGCTCTCCGATTTCGGCTGCTTAGGCAACAAGGTTTTAAGGTTTCATGCAACATGTTCAACAAGTTCATCGATGTTGATGGAAAATTTAAGGAATCATGCGTTGCTGATGTAGTAGGATTGCTAAGTTTGTACGAAGCGACACATCTAAGGACACATGGAGATGATATATTAGATCGAGCACGGTCCTTCACCACCACTCATCTTGAGTTTGCAGTGGCAGAACACGGCCGTTTAAGCCCCCCGCTTTCAAAACAAGTAGCTCATGCCTTATATCAACCACTCTGGAAGGGAAACCCAAGGATTGAAGCGAGGCATTACCTCTCTAGCTACCGGGAACTAAATACTTCACATTTTAGCGAAAGTCTTTTGACTTTTGCGAAGTTGGATTTCAATCAATTGCAGCGAATCCATCAAAAAGAACTAAGTCACATCACAAGGTGGTGGAAGGAGTTGGACTTTGTCAACAAACTACCTTTTGCAAGGGACAGAATAGTAGAGTGTTACTTTTGGTCTTTGGGAGTCTACTTTGAGCCCAAGTATCATTTTGGGAGGACAACATTATGCAAAGTTCTTGGCTTACTAACCATGATTGATGACACTTACGATACGTACGGCACACCTGAAGAACTAGAGCTCTTTACTGAAGCTATTGAGAGGTGGGATATCTCTGCCATGGATTCATTGCCTGACTATATGAAAGTTTGCTATGGGGCATTGTTGAATGTCTACACTGAAATTAAAGATGAGCTTGCAAAGGAGGGAAACTCGTATCGCATCAACTATGCAATAGAAGCAGTAAGCCTCATAAGGTCTCAGCGAGAGCTGACTGATTTAGTGTTTTATGGTTTATGGGAGCCATGTGGATCTTACTTAGAGGAAGCCAAATGGTTCCACCAAAAGTACACACCGAAAACCTTTGATGAGTATATGTCGGTGGCACTTGTATCATCCGGCATGTTTACGGTGGAAGCAACATTTATCGTTGCAATAGCTGGTGATATTGTTACAAGAGATTCCTTGGACTGGTTGTTCAGTGATCCTAAATTTGTAAAGGCTTCATCGATAATTGGGAGACTCTTGAATGACATCCGAAGCCACAAGCTTGAGCAAAAGAGAGGACATGTTGTCTCAGCTGTGGAATGCTATATGAAAGAACACTGTGCTACAGAAGAAGTAGCGGTGATTGAACTGACTAAACATGTAAATGATGCATGGGCGGATGTAAACGAAGGATTGCTTCACCCTATCGCTACTGTCCCTAGGCCACTACTATTGCTAATTCTCAATTTTCTACGCGTAACTGATGTTATATACAAGCGTGAAGATGGTTATACTCATGGTGGAGTTGCGCTCAAGGATTATATAACTTCTCTTCTTGTCGAACATGTTCCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

581

Amino Acids

67.11

Weight (kDa)

5.34

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 26 - 206 1.3e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 265 - 382 6.5e-49 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 305 - 523 5.7e-48 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 403 - 523 1.2e-38 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 2 cut(s) 870, 1074
AccII CGCG 1 cut(s) 1644
AciI CCGC 3 cut(s) 590, 1526, 1565
AclWI GGATC 3 cut(s) 12, 1219, 1379
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 3 cut(s) 279, 431, 1391
AcuI CTGAAG 3 cut(s) 173, 990, 1011
AdeI CACNNNGTG 1 cut(s) 786
AfaI GTAC 3 cut(s) 479, 959, 1250
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 78, 250, 1371
AflIII ACRYGT 5 cut(s) 399, 1468, 1546, 1642, 1732
AgsI TTSAA 8 cut(s) 128, 406, 597, 653, 739, 1069, 1429, 1535
AhdI GACNNNNNGTC 1 cut(s) 1472
AloI GAACNNNNNNTCC 2 cut(s) 1361, 1393
Alw21I GWGCWC 2 cut(s) 529, 984
Alw26I GTCTC 3 cut(s) 1164, 1414, 1480
AlwI GGATC 3 cut(s) 12, 1219, 1379
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 2 cut(s) 574, 1610
ApeKI GCWGC 2 cut(s) 364, 748
ApoI RAATTY 3 cut(s) 279, 431, 1391
Asp700I GAANNNNTTC 1 cut(s) 1734
AspA2I CCTAGG 1 cut(s) 1607
AspLEI GCGC 2 cut(s) 228, 1699
AspS9I GGNCC 2 cut(s) 291, 531
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 4 cut(s) 529, 1355, 1540, 1580
AvaII GGWCC 2 cut(s) 291, 531
AvrII CCTAGG 1 cut(s) 1607
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BanII GRGCYC 2 cut(s) 882, 984
Bbv12I GWGCWC 2 cut(s) 529, 984
BbvI GCAGC 2 cut(s) 351, 760
BccI CCATC 4 cut(s) 103, 419, 765, 1667
BceAI ACGGC 4 cut(s) 346, 561, 589, 976
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 3 cut(s) 1164, 1414, 1480
BfaI CTAG 4 cut(s) 176, 672, 977, 1608
BfmI CTRYAG 2 cut(s) 117, 1512
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 152
BisI GCNGC 2 cut(s) 365, 749
BlnI CCTAGG 1 cut(s) 1607
BlsI GCNGC 2 cut(s) 366, 750
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 2 cut(s) 291, 531
BmeRI GACNNNNNGTC 1 cut(s) 1472
BmgT120I GGNCC 2 cut(s) 291, 531
BmiI GGNNCC 2 cut(s) 1203, 1238
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 4 cut(s) 113, 162, 1131, 1546
BplI GAGNNNNNCTC 4 cut(s) 1097, 1129, 1683, 1715
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 3 cut(s) 572, 1472, 1685
BpuMI CCSGG 1 cut(s) 680
Bsa29I ATCGAT 3 cut(s) 107, 417, 1409
BsaAI YACGTR 1 cut(s) 957
BsaBI GATNNNNATC 2 cut(s) 45, 738
BsaI GGTCTC 1 cut(s) 1164
BsaJI CCNNGG 4 cut(s) 644, 1020, 1365, 1607
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 250, 1371
Bse1I ACTGG 2 cut(s) 27, 1376
Bse3DI GCAATG 1 cut(s) 1028
Bse8I GATNNNNATC 2 cut(s) 45, 738
BseCI ATCGAT 3 cut(s) 107, 417, 1409
BseDI CCNNGG 4 cut(s) 644, 1020, 1365, 1607
BseGI GGATG 5 cut(s) 177, 259, 1295, 1434, 1573
BseJI GATNNNNATC 2 cut(s) 45, 738
BseLI CCNNNNNNNGG 3 cut(s) 78, 250, 1371
BseMI GCAATG 1 cut(s) 1028
BseMII CTCAG 2 cut(s) 1175, 1491
BseNI ACTGG 2 cut(s) 27, 1376
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 351, 760
BseYI CCCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 1644
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 2 cut(s) 576, 1612
BshVI ATCGAT 3 cut(s) 107, 417, 1409
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 529, 984
BsiSI CCGG 3 cut(s) 289, 679, 1299
BsiWI CGTACG 1 cut(s) 957
BslFI GGGAC 2 cut(s) 845, 1589
BslI CCNNNNNNNGG 3 cut(s) 78, 250, 1371
BsmAI GTCTC 3 cut(s) 1164, 1414, 1480
BsmFI GGGAC 2 cut(s) 845, 1589
BsmI GAATGC 1 cut(s) 1493
BsnI GGCC 2 cut(s) 576, 1612
Bso31I GGTCTC 1 cut(s) 1164
Bsp1286I GDGCHC 3 cut(s) 529, 882, 984
Bsp143I GATC 5 cut(s) 4, 46, 520, 1211, 1384
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 3 cut(s) 590, 1526, 1565
BspANI GGCC 2 cut(s) 576, 1612
BspCNI CTCAG 2 cut(s) 1174, 1490
BspDI ATCGAT 3 cut(s) 107, 417, 1409
BspFNI CGCG 1 cut(s) 1644
BspLI GGNNCC 2 cut(s) 1203, 1238
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 3 cut(s) 12, 1219, 1379
BspTNI GGTCTC 1 cut(s) 1164
BsrDI GCAATG 1 cut(s) 1028
BsrI ACTGG 2 cut(s) 27, 1376
BssECI CCNNGG 4 cut(s) 644, 1020, 1365, 1607
BssMI GATC 5 cut(s) 4, 46, 520, 1211, 1384
BssT1I CCWWGG 4 cut(s) 644, 1020, 1365, 1607
Bst4CI ACNGT 5 cut(s) 346, 531, 1312, 1508, 1603
Bst6I CTCTTC 2 cut(s) 161, 1725
BstBAI YACGTR 1 cut(s) 957
BstC8I GCNNGC 1 cut(s) 1098
BstDEI CTNAG 7 cut(s) 368, 470, 494, 770, 1161, 1219, 1477
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 5 cut(s) 177, 259, 1295, 1434, 1573
BstFNI CGCG 1 cut(s) 1644
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 1699
BstKTI GATC 5 cut(s) 7, 49, 523, 1214, 1387
BstMAI GTCTC 3 cut(s) 1164, 1414, 1480
BstMBI GATC 5 cut(s) 4, 46, 520, 1211, 1384
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1139
BstNSI RCATGY 5 cut(s) 403, 1306, 1472, 1550, 1736
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 2 cut(s) 117, 1512
BstSNI TACGTA 1 cut(s) 957
BstUI CGCG 1 cut(s) 1644
BstV1I GCAGC 2 cut(s) 351, 760
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BstZI CGGCCG 1 cut(s) 574
Bsu15I ATCGAT 3 cut(s) 107, 417, 1409
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 2 cut(s) 576, 1612
BsuTUI ATCGAT 3 cut(s) 107, 417, 1409
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 5 cut(s) 177, 259, 1295, 1434, 1573
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 4 cut(s) 567, 1077, 1387, 1504
Cac8I GCNNGC 1 cut(s) 1098
CfoI GCGC 2 cut(s) 228, 1699
Cfr13I GGNCC 2 cut(s) 291, 531
ClaI ATCGAT 3 cut(s) 107, 417, 1409
Csp6I GTAC 3 cut(s) 478, 958, 1249
CspCI CAANNNNNGTGG 4 cut(s) 532, 567, 1602, 1637
CviQI GTAC 3 cut(s) 478, 958, 1249
DdeI CTNAG 7 cut(s) 368, 470, 494, 770, 1161, 1219, 1477
DpnI GATC 5 cut(s) 6, 48, 522, 1213, 1386
DpnII GATC 5 cut(s) 4, 46, 520, 1211, 1384
DraIII CACNNNGTG 1 cut(s) 786
DriI GACNNNNNGTC 1 cut(s) 1472
EaeI YGGCCR 1 cut(s) 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 2 cut(s) 161, 1725
Eam1105I GACNNNNNGTC 1 cut(s) 1472
EarI CTCTTC 2 cut(s) 161, 1725
EciI GGCGGA 1 cut(s) 1580
Ecl136II GAGCTC 1 cut(s) 982
EclXI CGGCCG 1 cut(s) 574
Eco105I TACGTA 1 cut(s) 957
Eco130I CCWWGG 4 cut(s) 644, 1020, 1365, 1607
Eco24I GRGCYC 2 cut(s) 882, 984
Eco31I GGTCTC 1 cut(s) 1164
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 2 cut(s) 291, 531
Eco47III AGCGCT 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 574
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 3 cut(s) 173, 990, 1011
EcoICRI GAGCTC 1 cut(s) 982
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 4 cut(s) 644, 1020, 1365, 1607
EcoT22I ATGCAT 2 cut(s) 106, 1561
EcoT38I GRGCYC 2 cut(s) 882, 984
ErhI CCWWGG 4 cut(s) 644, 1020, 1365, 1607
FalI AAGNNNNNCTT 4 cut(s) 1080, 1112, 1569, 1601
FaqI GGGAC 2 cut(s) 845, 1589
FauI CCCGC 1 cut(s) 597
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 870, 1074
Fnu4HI GCNGC 2 cut(s) 365, 749
FokI GGATG 5 cut(s) 184, 266, 1282, 1421, 1580
FriOI GRGCYC 2 cut(s) 882, 984
Fsp4HI GCNGC 2 cut(s) 365, 749
FspBI CTAG 4 cut(s) 176, 672, 977, 1608
GlaI GCGC 2 cut(s) 227, 1698
GluI GCNGC 2 cut(s) 365, 749
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 576, 1612
HapII CCGG 3 cut(s) 289, 679, 1299
HhaI GCGC 2 cut(s) 228, 1699
Hin6I GCGC 2 cut(s) 226, 1697
HinP1I GCGC 2 cut(s) 226, 1697
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 1448
HinfI GANTC 7 cut(s) 128, 440, 753, 867, 1025, 1361, 1422
HpaII CCGG 3 cut(s) 289, 679, 1299
HphI GGTGA 4 cut(s) 529, 1355, 1540, 1580
Hpy166II GTNNAC 6 cut(s) 811, 871, 1075, 1251, 1308, 1573
Hpy188I TCNGA 2 cut(s) 356, 1439
Hpy188III TCNNGA 4 cut(s) 38, 551, 631, 1426
Hpy8I GTNNAC 6 cut(s) 811, 871, 1075, 1251, 1308, 1573
Hpy99I CGWCG 3 cut(s) 54, 329, 332
HpyAV CCTTC 6 cut(s) 148, 347, 544, 628, 787, 1571
HpyCH4III ACNGT 5 cut(s) 346, 531, 1312, 1508, 1603
HpyCH4IV ACGT 2 cut(s) 52, 956
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1139
HpyF3I CTNAG 7 cut(s) 368, 470, 494, 770, 1161, 1219, 1477
HpySE526I ACGT 2 cut(s) 52, 956
HspAI GCGC 2 cut(s) 226, 1697
Kzo9I GATC 5 cut(s) 4, 46, 520, 1211, 1384
LmnI GCTCC 1 cut(s) 1201
Lsp1109I GCAGC 2 cut(s) 351, 760
LweI GCATC 4 cut(s) 113, 162, 1131, 1546
MaeI CTAG 4 cut(s) 176, 672, 977, 1608
MaeII ACGT 2 cut(s) 52, 956
MaeIII GTNAC 4 cut(s) 773, 848, 1351, 1645
MalI GATC 5 cut(s) 6, 48, 522, 1213, 1386
MboI GATC 5 cut(s) 4, 46, 520, 1211, 1384
MboII GAAGA 7 cut(s) 170, 178, 291, 983, 1529, 1682, 1712
MfeI CAATTG 1 cut(s) 743
MflI RGATCY 1 cut(s) 1211
MhlI GDGCHC 3 cut(s) 529, 882, 984
MluCI AATT 9 cut(s) 61, 279, 431, 743, 1083, 1391, 1413, 1626, 1633
MluI ACGCGT 1 cut(s) 1642
MlyI GAGTC 2 cut(s) 876, 1416
MmeI TCCRAC 3 cut(s) 156, 711, 780
Mph1103I ATGCAT 2 cut(s) 106, 1561
MroXI GAANNNNTTC 1 cut(s) 1734
MseI TTAA 4 cut(s) 384, 435, 581, 1086
MslI CAYNNNNRTG 2 cut(s) 507, 1551
MspA1I CMGCKG 1 cut(s) 1481
MspI CCGG 3 cut(s) 289, 679, 1299
MspR9I CCNGG 1 cut(s) 680
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 1493
MvnI CGCG 1 cut(s) 1644
MwoI GCNNNNNNNGC 5 cut(s) 17, 81, 370, 582, 1139
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 100
NdeII GATC 5 cut(s) 4, 46, 520, 1211, 1384
NlaIV GGNNCC 2 cut(s) 1203, 1238
NmuCI GTSAC 1 cut(s) 773
NsiI ATGCAT 2 cut(s) 106, 1561
NspI RCATGY 5 cut(s) 403, 1306, 1472, 1550, 1736
PciI ACATGT 4 cut(s) 399, 1468, 1546, 1732
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 1493
PdmI GAANNNNTTC 1 cut(s) 1734
PfeI GAWTC 5 cut(s) 128, 440, 753, 1025, 1361
Pfl23II CGTACG 1 cut(s) 957
PflFI GACNNNGTC 1 cut(s) 806
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 2 cut(s) 366, 750
PleI GAGTC 2 cut(s) 875, 1416
PpsI GAGTC 2 cut(s) 875, 1416
Ppu21I YACGTR 1 cut(s) 957
PscI ACATGT 4 cut(s) 399, 1468, 1546, 1732
Psp124BI GAGCTC 1 cut(s) 984
PspFI CCCAGC 1 cut(s) 71
PspLI CGTACG 1 cut(s) 957
PspN4I GGNNCC 2 cut(s) 1203, 1238
PspPI GGNCC 2 cut(s) 291, 531
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 1211
PsyI GACNNNGTC 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 1481
RsaI GTAC 3 cut(s) 479, 959, 1250
RsaNI GTAC 3 cut(s) 478, 958, 1249
RseI CAYNNNNRTG 2 cut(s) 507, 1551
SacI GAGCTC 1 cut(s) 984
SaqAI TTAA 4 cut(s) 384, 435, 581, 1086
SatI GCNGC 2 cut(s) 365, 749
Sau3AI GATC 5 cut(s) 4, 46, 520, 1211, 1384
Sau96I GGNCC 2 cut(s) 291, 531
SchI GAGTC 2 cut(s) 876, 1416
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 3 cut(s) 529, 882, 984
SfaNI GCATC 4 cut(s) 113, 162, 1131, 1546
SfcI CTRYAG 2 cut(s) 117, 1512
SinI GGWCC 2 cut(s) 291, 531
SmiMI CAYNNNNRTG 2 cut(s) 507, 1551
SmlI CTYRAG 3 cut(s) 551, 1451, 1700
SmoI CTYRAG 3 cut(s) 551, 1451, 1700
SnaBI TACGTA 1 cut(s) 957
Sse9I AATT 9 cut(s) 61, 279, 431, 743, 1083, 1391, 1413, 1626, 1633
SsiI CCGC 3 cut(s) 590, 1526, 1565
SspMI CTAG 4 cut(s) 176, 672, 977, 1608
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 4 cut(s) 644, 1020, 1365, 1607
TaaI ACNGT 5 cut(s) 346, 531, 1312, 1508, 1603
TaiI ACGT 2 cut(s) 55, 959
TaqI TCGA 6 cut(s) 49, 107, 417, 523, 1409, 1728
TasI AATT 9 cut(s) 61, 279, 431, 743, 1083, 1391, 1413, 1626, 1633
TatI WGTACW 1 cut(s) 1248
TfiI GAWTC 5 cut(s) 128, 440, 753, 1025, 1361
Tru1I TTAA 4 cut(s) 384, 435, 581, 1086
Tru9I TTAA 4 cut(s) 384, 435, 581, 1086
TscAI CASTG 4 cut(s) 567, 1084, 1387, 1511
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 364, 748
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 6 cut(s) 381, 403, 1017, 1058, 1395, 1511
TspRI CASTG 4 cut(s) 567, 1084, 1387, 1511
Tth111I GACNNNGTC 1 cut(s) 806
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 291, 531
XapI RAATTY 3 cut(s) 279, 431, 1391
XceI RCATGY 5 cut(s) 403, 1306, 1472, 1550, 1736
XmaJI CCTAGG 1 cut(s) 1607
XmiI GTMKAC 2 cut(s) 870, 1074
XmnI GAANNNNTTC 1 cut(s) 1734
XspI CTAG 4 cut(s) 176, 672, 977, 1608
Zsp2I ATGCAT 2 cut(s) 106, 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.