Rh6DG027700

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000053
Physical Location & Seq
Reverse (-)
2447055 .. 2451302
4248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG027700.1

Sequence Viewer

Length: 1398 bp
ATGTCTCTCCAACTATTGGCAACTCAAGCTCAAAGGCCAAATACTGCTGATGTTAAGCGACCTTCAGCTAATTTTACCCCAGGCATTTGGGGTGATCATTTTCTCTCTTATGCTACCACGGAAGTTGACATTAAACTTGAGCTACATGTCCGAGAACTAAAAGAAGAGGTGAAGAGGATGCTAATGGACTCCTTAAAAAACCCTTCACAACAATTGGACTTGATTGATGACATTCAACGCCTAGGCGTGTCCTATCATTTTGAAAATGAGATTGATGAAATTTTGAAACAAATTCACCACAACTACTCTTATGGTAGTGAAGATGACCTTTACACTACTGCTCTCCGTTTTCGATTGCTGAGACAACAAGGTTACAATGTTTCATGCGATATGTTCAACAAGTACATGGAAGGAAATGATCAAAAATTTAAGGCATCTCTCCTGAGTGATGTATCAGGACTATTAAGCTTGTATGAAGCCGCCCATCTCAGGATACACGGAGAAGACATACTCGAAGAGGCTCTAGCCTTCACCACCACTCATCTTGAGTCGATCAAACACAGTTTAAGCCCTCCACTTTTGAAACAAGTAGCTCATTCCTTAACTCAGTCACTTCGAAAGGGCATCACCAGGGTGGAAGCTAAATATTACTTGTCAATCTATCATGAACGCAATTCACATAACGAGACTCTCCTGACTTTTGCAAAGTTGGATTTCAACCTACTGCAGCAAGTCCATCAAAAGGAACTATGTGAAATTACAAAGTGGTGGAAGGACTTGGATGTGAGAAACACGTTCCCGTTTGCAAGAGATAGAGTTACCGAAGTTTACTTCGGCTGGGCTTTCTCAGTGTACTTCGAACCTCAATATTCCTTTGCTAGGAGGACATCATGCAAAGTCACCGCCATGACATCTATTATCGATGACATTTATGATGCCCATGGCACACTCGAAGAATTAGAGCTCTTTACTAAAGCTATTCAGAGGTGGGATGTCTGTGCCATAGATCTGTTACCAGATTATATGAAAATATGTTATAAGGCACTATTAGAAGTCTATACTGAAATTGAAGAAGAGCTTGCACAGGAAGGAAAGTTGTATCGAATCCACTACGCAAGAGAAGCTATGAAAAAGCAAGCTGAAAATTACTTCCTTGAAGCTAAATGGTTGCACCAGAAACACATACCAACAATGGATGAATATATGGCCCTAGCTTTAATGACCACAGGCTACCCTCTGCTAATAACAACATCTTTTGTTGGAATGGGAGATATTGCTACACAAGACTCCTTCGATTGGTTGGCCACCTATCCCAAGGCTGTAAAAGGGGCTGCGGTAGTTGCCCGACTCATGGATGACATAGCGGACCATAAGGTACATACCTATTTTGCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

465

Amino Acids

53.99

Weight (kDa)

5.63

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 29 - 201 6.1e-60 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 258 - 458 1.6e-77 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 299 - 458 8.5e-44 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AccB7I CCANNNNNTGG 1 cut(s) 16
AciI CCGC 4 cut(s) 480, 903, 1334, 1364
AcoI YGGCCR 1 cut(s) 1302
AcsI RAATTY 3 cut(s) 279, 291, 425
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 3 cut(s) 404, 854, 1377
AfiI CCNNNNNNNGG 6 cut(s) 16, 489, 742, 879, 1296, 1351
AflIII ACRYGT 2 cut(s) 145, 792
AgsI TTSAA 8 cut(s) 236, 263, 286, 397, 583, 718, 1070, 1157
AjnI CCWGG 2 cut(s) 79, 629
AleI CACNNNNGTG 1 cut(s) 632
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 3 cut(s) 9, 355, 680
AoxI GGCC 3 cut(s) 35, 1206, 1302
ApeKI GCWGC 2 cut(s) 727, 1331
ApoI RAATTY 3 cut(s) 279, 291, 425
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 1207, 1366
AsuHPI GGTGA 6 cut(s) 104, 181, 287, 523, 619, 892
AsuII TTCGAA 2 cut(s) 616, 858
AvaII GGWCC 1 cut(s) 1366
AvrII CCTAGG 1 cut(s) 241
BalI TGGCCA 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 966
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 739, 1318
BccI CCATC 2 cut(s) 492, 744
BciT130I CCWGG 2 cut(s) 81, 631
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 2 cut(s) 94, 418
BcoDI GTCTC 3 cut(s) 9, 355, 680
BfaI CTAG 4 cut(s) 242, 524, 879, 1211
BfmI CTRYAG 1 cut(s) 725
BfuI GTATCC 1 cut(s) 486
BglII AGATCT 1 cut(s) 1006
BisI GCNGC 3 cut(s) 480, 728, 1332
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 3 cut(s) 481, 729, 1333
Bme1390I CCNGG 2 cut(s) 81, 631
Bme18I GGWCC 1 cut(s) 1366
BmgT120I GGNCC 2 cut(s) 1207, 1366
BmrFI CCNGG 2 cut(s) 81, 631
BmsI GCATC 4 cut(s) 168, 443, 633, 925
BpiI GAAGAC 1 cut(s) 510
Bpu14I TTCGAA 2 cut(s) 616, 858
BpuEI CTTGAG 3 cut(s) 9, 158, 566
Bsa29I ATCGAT 1 cut(s) 921
BsaJI CCNNGG 6 cut(s) 79, 117, 241, 630, 940, 1314
Bsc4I CCNNNNNNNGG 6 cut(s) 16, 489, 742, 879, 1296, 1351
BseBI CCWGG 2 cut(s) 81, 631
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 6 cut(s) 79, 117, 241, 630, 940, 1314
BseGI GGATG 5 cut(s) 183, 787, 997, 1201, 1360
BseLI CCNNNNNNNGG 6 cut(s) 16, 489, 742, 879, 1296, 1351
BseMII CTCAG 5 cut(s) 350, 434, 502, 620, 861
BseXI GCAGC 2 cut(s) 739, 1318
BseYI CCCAGC 1 cut(s) 837
BshFI GGCC 3 cut(s) 37, 1208, 1304
BshVI ATCGAT 1 cut(s) 921
BsiHKAI GWGCWC 1 cut(s) 966
BslI CCNNNNNNNGG 6 cut(s) 16, 489, 742, 879, 1296, 1351
BsmAI GTCTC 3 cut(s) 9, 355, 680
BsnI GGCC 3 cut(s) 37, 1208, 1304
Bsp119I TTCGAA 2 cut(s) 616, 858
Bsp1286I GDGCHC 1 cut(s) 966
Bsp143I GATC 4 cut(s) 94, 418, 552, 1006
Bsp19I CCATGG 1 cut(s) 940
BspACI CCGC 4 cut(s) 480, 903, 1334, 1364
BspANI GGCC 3 cut(s) 37, 1208, 1304
BspCNI CTCAG 5 cut(s) 351, 435, 501, 619, 860
BspDI ATCGAT 1 cut(s) 921
BspHI TCATGA 1 cut(s) 664
BspMAI CTGCAG 1 cut(s) 729
BspQI GCTCTTC 1 cut(s) 1068
BspT104I TTCGAA 2 cut(s) 616, 858
BssECI CCNNGG 6 cut(s) 79, 117, 241, 630, 940, 1314
BssMI GATC 4 cut(s) 94, 418, 552, 1006
BssT1I CCWWGG 3 cut(s) 241, 940, 1314
Bst2UI CCWGG 2 cut(s) 81, 631
Bst4CI ACNGT 1 cut(s) 563
Bst6I CTCTTC 4 cut(s) 159, 167, 510, 1068
BstBI TTCGAA 2 cut(s) 616, 858
BstC8I GCNNGC 2 cut(s) 1080, 1137
BstDEI CTNAG 5 cut(s) 359, 443, 488, 606, 847
BstDSI CCRYGG 2 cut(s) 117, 940
BstENI CCTNNNNNAGG 1 cut(s) 877
BstF5I GGATG 5 cut(s) 183, 787, 997, 1201, 1360
BstKTI GATC 4 cut(s) 97, 421, 555, 1009
BstMAI GTCTC 3 cut(s) 9, 355, 680
BstMBI GATC 4 cut(s) 94, 418, 552, 1006
BstMWI GCNNNNNNNGC 3 cut(s) 26, 1121, 1340
BstNI CCWGG 2 cut(s) 81, 631
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 79, 629
BstSFI CTRYAG 1 cut(s) 725
BstV1I GCAGC 2 cut(s) 739, 1318
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 1006
BstXI CCANNNNNNTGG 1 cut(s) 87
BstYI RGATCY 1 cut(s) 1006
Bsu15I ATCGAT 1 cut(s) 921
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 37, 1208, 1304
BsuTUI ATCGAT 1 cut(s) 921
BtgI CCRYGG 2 cut(s) 117, 940
BtsCI GGATG 5 cut(s) 183, 787, 997, 1201, 1360
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 2 cut(s) 1080, 1137
CciI TCATGA 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 1207, 1366
ClaI ATCGAT 1 cut(s) 921
Csp6I GTAC 3 cut(s) 403, 853, 1376
CspCI CAANNNNNGTGG 4 cut(s) 106, 141, 526, 561
CviAII CATG 8 cut(s) 146, 384, 406, 665, 891, 907, 941, 1351
CviQI GTAC 3 cut(s) 403, 853, 1376
DdeI CTNAG 5 cut(s) 359, 443, 488, 606, 847
DpnI GATC 4 cut(s) 96, 420, 554, 1008
DpnII GATC 4 cut(s) 94, 418, 552, 1006
EaeI YGGCCR 1 cut(s) 1302
Eam1104I CTCTTC 4 cut(s) 159, 167, 510, 1068
EarI CTCTTC 4 cut(s) 159, 167, 510, 1068
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 3 cut(s) 241, 940, 1314
Eco24I GRGCYC 1 cut(s) 966
Eco47I GGWCC 1 cut(s) 1366
Eco53kI GAGCTC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 964
EcoNI CCTNNNNNAGG 1 cut(s) 877
EcoRII CCWGG 2 cut(s) 79, 629
EcoT14I CCWWGG 3 cut(s) 241, 940, 1314
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 3 cut(s) 241, 940, 1314
FaeI CATG 8 cut(s) 149, 387, 409, 668, 894, 910, 944, 1354
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 1062, 1094
FatI CATG 8 cut(s) 145, 383, 405, 664, 890, 906, 940, 1350
FbaI TGATCA 2 cut(s) 94, 418
Fnu4HI GCNGC 3 cut(s) 480, 728, 1332
FokI GGATG 5 cut(s) 190, 794, 1004, 1208, 1367
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 480, 728, 1332
FspBI CTAG 4 cut(s) 242, 524, 879, 1211
GluI GCNGC 3 cut(s) 480, 728, 1332
GsaI CCCAGC 1 cut(s) 841
HaeIII GGCC 3 cut(s) 37, 1208, 1304
Hin1II CATG 8 cut(s) 149, 387, 409, 668, 894, 910, 944, 1354
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 6 cut(s) 188, 548, 688, 1104, 1286, 1347
HphI GGTGA 6 cut(s) 104, 181, 287, 523, 619, 892
Hpy166II GTNNAC 3 cut(s) 127, 829, 853
Hpy188I TCNGA 2 cut(s) 152, 984
Hpy188III TCNNGA 6 cut(s) 442, 456, 490, 545, 665, 694
Hpy8I GTNNAC 3 cut(s) 127, 829, 853
HpyAV CCTTC 7 cut(s) 72, 213, 404, 538, 766, 1082, 1300
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 794
HpyCH4V TGCA 6 cut(s) 704, 727, 806, 894, 1082, 1171
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 1121, 1340
HpyF3I CTNAG 5 cut(s) 359, 443, 488, 606, 847
HpySE526I ACGT 1 cut(s) 794
Hsp92II CATG 8 cut(s) 149, 387, 409, 668, 894, 910, 944, 1354
Ksp22I TGATCA 2 cut(s) 94, 418
Kzo9I GATC 4 cut(s) 94, 418, 552, 1006
LguI GCTCTTC 1 cut(s) 1068
Lsp1109I GCAGC 2 cut(s) 739, 1318
LweI GCATC 4 cut(s) 168, 443, 633, 925
MaeI CTAG 4 cut(s) 242, 524, 879, 1211
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 5 cut(s) 371, 609, 817, 898, 1011
MalI GATC 4 cut(s) 96, 420, 554, 1008
MboI GATC 4 cut(s) 94, 418, 552, 1006
MboII GAAGA 8 cut(s) 176, 184, 332, 515, 527, 965, 1082, 1085
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 1 cut(s) 966
MlsI TGGCCA 1 cut(s) 1304
MluNI TGGCCA 1 cut(s) 1304
MlyI GAGTC 5 cut(s) 182, 557, 682, 1280, 1341
MmeI TCCRAC 3 cut(s) 34, 690, 1240
MnlI CCTC 8 cut(s) 160, 168, 511, 582, 873, 876, 978, 1245
Mox20I TGGCCA 1 cut(s) 1304
MscI TGGCCA 1 cut(s) 1304
MseI TTAA 8 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217
MslI CAYNNNNRTG 2 cut(s) 632, 905
Msp20I TGGCCA 1 cut(s) 1304
MspR9I CCNGG 2 cut(s) 81, 631
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 2 cut(s) 81, 631
MwoI GCNNNNNNNGC 3 cut(s) 26, 1121, 1340
NcoI CCATGG 1 cut(s) 940
NdeII GATC 4 cut(s) 94, 418, 552, 1006
NlaIII CATG 8 cut(s) 149, 387, 409, 668, 894, 910, 944, 1354
NmuCI GTSAC 2 cut(s) 609, 898
NspI RCATGY 1 cut(s) 149
NspV TTCGAA 2 cut(s) 616, 858
OliI CACNNNNGTG 1 cut(s) 632
PagI TCATGA 1 cut(s) 664
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 1104
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 3 cut(s) 481, 729, 1333
PleI GAGTC 5 cut(s) 182, 556, 682, 1280, 1341
PpsI GAGTC 5 cut(s) 182, 556, 682, 1280, 1341
PscI ACATGT 1 cut(s) 145
PsiI TTATAA 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 966
Psp6I CCWGG 2 cut(s) 79, 629
PspFI CCCAGC 1 cut(s) 837
PspGI CCWGG 2 cut(s) 79, 629
PspPI GGNCC 2 cut(s) 1207, 1366
PstI CTGCAG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 1006
RsaI GTAC 3 cut(s) 404, 854, 1377
RsaNI GTAC 3 cut(s) 403, 853, 1376
RseI CAYNNNNRTG 2 cut(s) 632, 905
SacI GAGCTC 1 cut(s) 966
SapI GCTCTTC 1 cut(s) 1068
SaqAI TTAA 8 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217
SatI GCNGC 3 cut(s) 480, 728, 1332
Sau3AI GATC 4 cut(s) 94, 418, 552, 1006
Sau96I GGNCC 2 cut(s) 1207, 1366
SchI GAGTC 5 cut(s) 182, 557, 682, 1280, 1341
ScrFI CCNGG 2 cut(s) 81, 631
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 4 cut(s) 168, 443, 633, 925
SfcI CTRYAG 1 cut(s) 725
SfuI TTCGAA 2 cut(s) 616, 858
SinI GGWCC 1 cut(s) 1366
SmiMI CAYNNNNRTG 2 cut(s) 632, 905
SmlI CTYRAG 3 cut(s) 24, 137, 545
SmoI CTYRAG 3 cut(s) 24, 137, 545
SsiI CCGC 4 cut(s) 480, 903, 1334, 1364
SspI AATATT 2 cut(s) 647, 869
SspMI CTAG 4 cut(s) 242, 524, 879, 1211
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 79, 629
StyI CCWWGG 3 cut(s) 241, 940, 1314
TaaI ACNGT 1 cut(s) 563
TaiI ACGT 1 cut(s) 797
TaqI TCGA 9 cut(s) 352, 513, 551, 616, 858, 921, 951, 1102, 1293
TatI WGTACW 2 cut(s) 402, 852
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 1 cut(s) 1104
Tru1I TTAA 8 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217
Tru9I TTAA 8 cut(s) 54, 132, 194, 429, 464, 566, 602, 1217
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 2 cut(s) 609, 898
TseI GCWGC 2 cut(s) 727, 1331
Tsp45I GTSAC 2 cut(s) 609, 898
TspDTI ATGAA 7 cut(s) 291, 372, 489, 681, 1040, 1142, 1212
TspGWI ACGGA 3 cut(s) 134, 335, 513
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 1366
XagI CCTNNNNNAGG 1 cut(s) 877
XapI RAATTY 3 cut(s) 279, 291, 425
XceI RCATGY 1 cut(s) 149
XmaJI CCTAGG 1 cut(s) 241
XspI CTAG 4 cut(s) 242, 524, 879, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.