(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 30 - 202 | 5.9e-61 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 259 - 499 | 1.2e-92 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 300 - 499 | 1.1e-58 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 378 |
| AatII | GACGTC | 1 cut(s) | 1229 |
| AccB1I | GGYRCC | 1 cut(s) | 1436 |
| AclI | AACGTT | 1 cut(s) | 381 |
| AclWI | GGATC | 3 cut(s) | 185, 198, 1004 |
| AcoI | YGGCCR | 1 cut(s) | 1305 |
| AcsI | RAATTY | 5 cut(s) | 282, 294, 428, 828, 1551 |
| AcuI | CTGAAG | 3 cut(s) | 713, 996, 1179 |
| AcyI | GRCGYC | 1 cut(s) | 1226 |
| AdeI | CACNNNGTG | 1 cut(s) | 768 |
| AfaI | GTAC | 3 cut(s) | 476, 857, 1592 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 492, 745, 882, 1299, 1354 |
| AjiI | CACGTC | 1 cut(s) | 787 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 661, 693 |
| AluBI | AGCT | 8 cut(s) | 29, 471, 967, 980, 1127, 1142, 1163, 1409 |
| AluI | AGCT | 8 cut(s) | 29, 471, 967, 980, 1127, 1142, 1163, 1409 |
| Alw21I | GWGCWC | 1 cut(s) | 969 |
| Alw26I | GTCTC | 3 cut(s) | 9, 358, 807 |
| AlwI | GGATC | 3 cut(s) | 185, 198, 1004 |
| Ama87I | CYCGRG | 1 cut(s) | 140 |
| AoxI | GGCC | 4 cut(s) | 35, 1209, 1305, 1535 |
| ApeKI | GCWGC | 2 cut(s) | 145, 1334 |
| ApoI | RAATTY | 5 cut(s) | 282, 294, 428, 828, 1551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1361, 1393 |
| AseI | ATTAAT | 1 cut(s) | 1220 |
| AspA2I | CCTAGG | 1 cut(s) | 244 |
| AspS9I | GGNCC | 1 cut(s) | 1210 |
| AsuHPI | GGTGA | 2 cut(s) | 107, 184 |
| AsuII | TTCGAA | 2 cut(s) | 619, 861 |
| AvaI | CYCGRG | 1 cut(s) | 140 |
| AvrII | CCTAGG | 1 cut(s) | 244 |
| BalI | TGGCCA | 1 cut(s) | 1307 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| BanI | GGYRCC | 1 cut(s) | 1436 |
| BanII | GRGCYC | 1 cut(s) | 969 |
| BbsI | GAAGAC | 1 cut(s) | 513 |
| Bbv12I | GWGCWC | 1 cut(s) | 969 |
| BbvCI | CCTCAGC | 1 cut(s) | 1405 |
| BbvI | GCAGC | 2 cut(s) | 157, 1321 |
| BccI | CCATC | 4 cut(s) | 272, 495, 747, 1592 |
| BceAI | ACGGC | 1 cut(s) | 787 |
| BciVI | GTATCC | 1 cut(s) | 489 |
| BclI | TGATCA | 2 cut(s) | 97, 421 |
| BcoDI | GTCTC | 3 cut(s) | 9, 358, 807 |
| BfaI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| BfmI | CTRYAG | 1 cut(s) | 1410 |
| BfuI | GTATCC | 1 cut(s) | 489 |
| BisI | GCNGC | 2 cut(s) | 146, 1335 |
| BlnI | CCTAGG | 1 cut(s) | 244 |
| BlsI | GCNGC | 2 cut(s) | 147, 1336 |
| BmeT110I | CYCGRG | 1 cut(s) | 140 |
| BmgBI | CACGTC | 1 cut(s) | 787 |
| BmgT120I | GGNCC | 1 cut(s) | 1210 |
| BmiI | GGNNCC | 2 cut(s) | 192, 1438 |
| BmsI | GCATC | 3 cut(s) | 29, 446, 923 |
| BpiI | GAAGAC | 1 cut(s) | 513 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1405 |
| Bpu14I | TTCGAA | 2 cut(s) | 619, 861 |
| BpuEI | CTTGAG | 3 cut(s) | 9, 569, 1613 |
| Bsa29I | ATCGAT | 1 cut(s) | 924 |
| BsaHI | GRCGYC | 1 cut(s) | 1226 |
| BsaJI | CCNNGG | 8 cut(s) | 120, 244, 632, 909, 943, 1317, 1532, 1572 |
| BsaWI | WCCGGW | 1 cut(s) | 1176 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 492, 745, 882, 1299, 1354 |
| Bse3DI | GCAATG | 2 cut(s) | 1272, 1344 |
| BseCI | ATCGAT | 1 cut(s) | 924 |
| BseDI | CCNNGG | 8 cut(s) | 120, 244, 632, 909, 943, 1317, 1532, 1572 |
| BseGI | GGATG | 3 cut(s) | 1204, 1363, 1582 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 492, 745, 882, 1299, 1354 |
| BseMI | GCAATG | 2 cut(s) | 1272, 1344 |
| BseMII | CTCAG | 2 cut(s) | 437, 1419 |
| BseXI | GCAGC | 2 cut(s) | 157, 1321 |
| BshFI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BshNI | GGYRCC | 1 cut(s) | 1436 |
| BshVI | ATCGAT | 1 cut(s) | 924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 969 |
| BsiHKCI | CYCGRG | 1 cut(s) | 140 |
| BsiSI | CCGG | 1 cut(s) | 1177 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 492, 745, 882, 1299, 1354 |
| BsmAI | GTCTC | 3 cut(s) | 9, 358, 807 |
| BsmI | GAATGC | 2 cut(s) | 627, 1583 |
| BsnI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BsoBI | CYCGRG | 1 cut(s) | 140 |
| Bsp119I | TTCGAA | 2 cut(s) | 619, 861 |
| Bsp1286I | GDGCHC | 1 cut(s) | 969 |
| Bsp143I | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| Bsp19I | CCATGG | 3 cut(s) | 120, 909, 1572 |
| BspANI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BspCNI | CTCAG | 2 cut(s) | 438, 1418 |
| BspDI | ATCGAT | 1 cut(s) | 924 |
| BspHI | TCATGA | 1 cut(s) | 1615 |
| BspLI | GGNNCC | 2 cut(s) | 192, 1438 |
| BspPI | GGATC | 3 cut(s) | 185, 198, 1004 |
| BspT104I | TTCGAA | 2 cut(s) | 619, 861 |
| BspT107I | GGYRCC | 1 cut(s) | 1436 |
| BsrDI | GCAATG | 2 cut(s) | 1272, 1344 |
| BssECI | CCNNGG | 8 cut(s) | 120, 244, 632, 909, 943, 1317, 1532, 1572 |
| BssMI | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| BssNI | GRCGYC | 1 cut(s) | 1226 |
| BssT1I | CCWWGG | 6 cut(s) | 120, 244, 909, 1317, 1532, 1572 |
| Bst4CI | ACNGT | 2 cut(s) | 46, 944 |
| Bst6I | CTCTTC | 3 cut(s) | 316, 447, 513 |
| BstACI | GRCGYC | 1 cut(s) | 1226 |
| BstBI | TTCGAA | 2 cut(s) | 619, 861 |
| BstC8I | GCNNGC | 2 cut(s) | 182, 1140 |
| BstDEI | CTNAG | 3 cut(s) | 446, 491, 1405 |
| BstDSI | CCRYGG | 4 cut(s) | 120, 909, 943, 1572 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 880 |
| BstF5I | GGATG | 3 cut(s) | 1204, 1363, 1582 |
| BstKTI | GATC | 4 cut(s) | 100, 193, 424, 1012 |
| BstMAI | GTCTC | 3 cut(s) | 9, 358, 807 |
| BstMBI | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| BstNSI | RCATGY | 2 cut(s) | 184, 802 |
| BstSFI | CTRYAG | 1 cut(s) | 1410 |
| BstV1I | GCAGC | 2 cut(s) | 157, 1321 |
| BstV2I | GAAGAC | 1 cut(s) | 513 |
| BstX2I | RGATCY | 2 cut(s) | 190, 1009 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 90 |
| BstYI | RGATCY | 2 cut(s) | 190, 1009 |
| Bsu15I | ATCGAT | 1 cut(s) | 924 |
| BsuI | GTATCC | 1 cut(s) | 489 |
| BsuRI | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| BsuTUI | ATCGAT | 1 cut(s) | 924 |
| BtgI | CCRYGG | 4 cut(s) | 120, 909, 943, 1572 |
| BtrI | CACGTC | 1 cut(s) | 787 |
| BtsCI | GGATG | 3 cut(s) | 1204, 1363, 1582 |
| BtsIMutI | CAGTG | 1 cut(s) | 858 |
| Cac8I | GCNNGC | 2 cut(s) | 182, 1140 |
| CciI | TCATGA | 1 cut(s) | 1615 |
| Cfr13I | GGNCC | 1 cut(s) | 1210 |
| ClaI | ATCGAT | 1 cut(s) | 924 |
| CseI | GACGC | 1 cut(s) | 1493 |
| Csp6I | GTAC | 3 cut(s) | 475, 856, 1591 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 529, 564 |
| CviQI | GTAC | 3 cut(s) | 475, 856, 1591 |
| DdeI | CTNAG | 3 cut(s) | 446, 491, 1405 |
| DpnI | GATC | 4 cut(s) | 99, 192, 423, 1011 |
| DpnII | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| DraIII | CACNNNGTG | 1 cut(s) | 768 |
| EaeI | YGGCCR | 1 cut(s) | 1305 |
| Eam1104I | CTCTTC | 3 cut(s) | 316, 447, 513 |
| EarI | CTCTTC | 3 cut(s) | 316, 447, 513 |
| Ecl136II | GAGCTC | 1 cut(s) | 967 |
| Eco130I | CCWWGG | 6 cut(s) | 120, 244, 909, 1317, 1532, 1572 |
| Eco24I | GRGCYC | 1 cut(s) | 969 |
| Eco53kI | GAGCTC | 1 cut(s) | 967 |
| Eco57I | CTGAAG | 3 cut(s) | 713, 996, 1179 |
| Eco88I | CYCGRG | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 1 cut(s) | 967 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 880 |
| EcoRI | GAATTC | 1 cut(s) | 1551 |
| EcoT14I | CCWWGG | 6 cut(s) | 120, 244, 909, 1317, 1532, 1572 |
| EcoT38I | GRGCYC | 1 cut(s) | 969 |
| ErhI | CCWWGG | 6 cut(s) | 120, 244, 909, 1317, 1532, 1572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1065, 1097 |
| FbaI | TGATCA | 2 cut(s) | 97, 421 |
| Fnu4HI | GCNGC | 2 cut(s) | 146, 1335 |
| FokI | GGATG | 3 cut(s) | 1211, 1370, 1589 |
| FriOI | GRGCYC | 1 cut(s) | 969 |
| Fsp4HI | GCNGC | 2 cut(s) | 146, 1335 |
| FspBI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| GluI | GCNGC | 2 cut(s) | 146, 1335 |
| HaeIII | GGCC | 4 cut(s) | 37, 1211, 1307, 1537 |
| HapII | CCGG | 1 cut(s) | 1177 |
| HgaI | GACGC | 1 cut(s) | 1493 |
| Hin1I | GRCGYC | 1 cut(s) | 1226 |
| HincII | GTYRAC | 1 cut(s) | 660 |
| HindII | GTYRAC | 1 cut(s) | 660 |
| HindIII | AAGCTT | 1 cut(s) | 469 |
| HinfI | GANTC | 6 cut(s) | 551, 677, 1107, 1289, 1350, 1505 |
| HpaII | CCGG | 1 cut(s) | 1177 |
| HphI | GGTGA | 2 cut(s) | 107, 184 |
| Hpy166II | GTNNAC | 6 cut(s) | 130, 534, 660, 807, 856, 1369 |
| Hpy188I | TCNGA | 6 cut(s) | 155, 426, 447, 633, 732, 1463 |
| Hpy188III | TCNNGA | 4 cut(s) | 459, 548, 697, 1616 |
| Hpy8I | GTNNAC | 6 cut(s) | 130, 534, 660, 807, 856, 1369 |
| HpyAV | CCTTC | 8 cut(s) | 75, 216, 407, 585, 769, 1085, 1303, 1526 |
| HpyCH4III | ACNGT | 2 cut(s) | 46, 944 |
| HpyCH4IV | ACGT | 4 cut(s) | 381, 673, 786, 1226 |
| HpyCH4V | TGCA | 8 cut(s) | 707, 897, 1085, 1174, 1265, 1337, 1565, 1583 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| HpyF3I | CTNAG | 3 cut(s) | 446, 491, 1405 |
| HpySE526I | ACGT | 4 cut(s) | 381, 673, 786, 1226 |
| Hsp92I | GRCGYC | 1 cut(s) | 1226 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 421 |
| Kzo9I | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| LpnPI | CCDG | 9 cut(s) | 51, 300, 444, 710, 826, 1032, 1132, 1190, 1215 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 1321 |
| LweI | GCATC | 3 cut(s) | 29, 446, 923 |
| MaeI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| MaeII | ACGT | 4 cut(s) | 381, 673, 786, 1226 |
| MaeIII | GTNAC | 4 cut(s) | 901, 1399, 1481, 1601 |
| MalI | GATC | 4 cut(s) | 99, 192, 423, 1011 |
| MboI | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| MfeI | CAATTG | 1 cut(s) | 215 |
| MflI | RGATCY | 2 cut(s) | 190, 1009 |
| MhlI | GDGCHC | 1 cut(s) | 969 |
| MlsI | TGGCCA | 1 cut(s) | 1307 |
| MluNI | TGGCCA | 1 cut(s) | 1307 |
| MlyI | GAGTC | 3 cut(s) | 560, 1283, 1344 |
| MmeI | TCCRAC | 1 cut(s) | 693 |
| MnlI | CCTC | 8 cut(s) | 514, 627, 876, 981, 1385, 1414, 1523, 1612 |
| Mox20I | TGGCCA | 1 cut(s) | 1307 |
| MscI | TGGCCA | 1 cut(s) | 1307 |
| MseI | TTAA | 9 cut(s) | 57, 432, 467, 569, 605, 984, 1154, 1220, 1557 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| Msp20I | TGGCCA | 1 cut(s) | 1307 |
| MspA1I | CMGCKG | 1 cut(s) | 1409 |
| MspI | CCGG | 1 cut(s) | 1177 |
| MunI | CAATTG | 1 cut(s) | 215 |
| Mva1269I | GAATGC | 2 cut(s) | 627, 1583 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 26, 1124 |
| NcoI | CCATGG | 3 cut(s) | 120, 909, 1572 |
| NdeII | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| NlaIV | GGNNCC | 2 cut(s) | 192, 1438 |
| NmuCI | GTSAC | 2 cut(s) | 901, 1481 |
| NspI | RCATGY | 2 cut(s) | 184, 802 |
| NspV | TTCGAA | 2 cut(s) | 619, 861 |
| PaeI | GCATGC | 1 cut(s) | 184 |
| PaeR7I | CTCGAG | 1 cut(s) | 140 |
| PagI | TCATGA | 1 cut(s) | 1615 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 387 |
| PctI | GAATGC | 2 cut(s) | 627, 1583 |
| PfeI | GAWTC | 3 cut(s) | 677, 1107, 1505 |
| PkrI | GCNGC | 2 cut(s) | 147, 1336 |
| PleI | GAGTC | 3 cut(s) | 559, 1283, 1344 |
| PpsI | GAGTC | 3 cut(s) | 559, 1283, 1344 |
| PshBI | ATTAAT | 1 cut(s) | 1220 |
| PsiI | TTATAA | 1 cut(s) | 378 |
| Psp124BI | GAGCTC | 1 cut(s) | 969 |
| Psp1406I | AACGTT | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 2 cut(s) | 192, 1438 |
| PspPI | GGNCC | 1 cut(s) | 1210 |
| PspXI | VCTCGAGB | 1 cut(s) | 140 |
| PsuI | RGATCY | 2 cut(s) | 190, 1009 |
| PvuII | CAGCTG | 1 cut(s) | 1409 |
| RsaI | GTAC | 3 cut(s) | 476, 857, 1592 |
| RsaNI | GTAC | 3 cut(s) | 475, 856, 1591 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| SacI | GAGCTC | 1 cut(s) | 969 |
| SaqAI | TTAA | 9 cut(s) | 57, 432, 467, 569, 605, 984, 1154, 1220, 1557 |
| SatI | GCNGC | 2 cut(s) | 146, 1335 |
| Sau3AI | GATC | 4 cut(s) | 97, 190, 421, 1009 |
| Sau96I | GGNCC | 1 cut(s) | 1210 |
| SchI | GAGTC | 3 cut(s) | 560, 1283, 1344 |
| SduI | GDGCHC | 1 cut(s) | 969 |
| SfaNI | GCATC | 3 cut(s) | 29, 446, 923 |
| SfcI | CTRYAG | 1 cut(s) | 1410 |
| Sfr274I | CTCGAG | 1 cut(s) | 140 |
| SfuI | TTCGAA | 2 cut(s) | 619, 861 |
| SlaI | CTCGAG | 1 cut(s) | 140 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 908 |
| SmlI | CTYRAG | 4 cut(s) | 24, 140, 548, 1628 |
| SmoI | CTYRAG | 4 cut(s) | 24, 140, 548, 1628 |
| SphI | GCATGC | 1 cut(s) | 184 |
| SspMI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| SstI | GAGCTC | 1 cut(s) | 969 |
| StyI | CCWWGG | 6 cut(s) | 120, 244, 909, 1317, 1532, 1572 |
| TaaI | ACNGT | 2 cut(s) | 46, 944 |
| TaiI | ACGT | 4 cut(s) | 384, 676, 789, 1229 |
| TaqI | TCGA | 9 cut(s) | 141, 355, 516, 619, 861, 924, 954, 1105, 1296 |
| TatI | WGTACW | 1 cut(s) | 855 |
| TfiI | GAWTC | 3 cut(s) | 677, 1107, 1505 |
| Tru1I | TTAA | 9 cut(s) | 57, 432, 467, 569, 605, 984, 1154, 1220, 1557 |
| Tru9I | TTAA | 9 cut(s) | 57, 432, 467, 569, 605, 984, 1154, 1220, 1557 |
| TscAI | CASTG | 1 cut(s) | 858 |
| TseFI | GTSAC | 2 cut(s) | 901, 1481 |
| TseI | GCWGC | 2 cut(s) | 145, 1334 |
| Tsp45I | GTSAC | 2 cut(s) | 901, 1481 |
| TspDTI | ATGAA | 7 cut(s) | 375, 826, 1043, 1145, 1215, 1439, 1627 |
| TspGWI | ACGGA | 2 cut(s) | 338, 1651 |
| TspRI | CASTG | 1 cut(s) | 858 |
| VspI | ATTAAT | 1 cut(s) | 1220 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 880 |
| XapI | RAATTY | 5 cut(s) | 282, 294, 428, 828, 1551 |
| XceI | RCATGY | 2 cut(s) | 184, 802 |
| XhoI | CTCGAG | 1 cut(s) | 140 |
| XmaJI | CCTAGG | 1 cut(s) | 244 |
| XspI | CTAG | 5 cut(s) | 245, 527, 765, 962, 1214 |
| ZraI | GACGTC | 1 cut(s) | 1227 |