FvH4_6g11440

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000053
Physical Location & Seq
Forward (+)
6868361 .. 6871596
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11440.t1

Sequence Viewer

Length: 1692 bp
ATGGCTCTCCATCAAGATTTAGCATCTCCAGCTCAAACCCTAAATGCTGCTTTCGATGTTAAGCCACGTCCTGCTAATTATGCCCCATGCATCTGGGGCGATCATTTTCTCTCATATTCTTCTATGGAACTAGACGTTAAAGTCGAGCAACATGTCCAAGAACTGAAAGAAGAAGTGAAAAGAATGCTAATGGTTGTAGTTAACGAGCCTGCTTCGCACATGTTGGACATGGTGGATAACATTCAGCGTTTAGGCTTGTCGTACCATTTCGAAAATGAGATTGATACAATCTTGAAACACGCTCATGATCATTTTTATGGAAGTAAAGATTTTGGAAAGGATGGTGACCTTTACACTACTGCTCTCCATTTTCGATTGCTTCGACAACAAGGCTATAATGTTTCATGCGATGTGTTCAACAAGTTCAAGGAAAGTGACGGGACATTTAAGGAATATCTTACGAGCGATGTGGTAGGACTACTAAGCTTGTATGAAGCCACTCATCTTAGGGTTCATGGAGAAGACATACTTGAAGAGGCACTGATCTTCACCACGACCCATCTGGAGTCTGCAGCACCCCGATTGAGTTCTCCCTTGTCAAAACAAGTAACTCATGCCTTGTATCAGCCACTTTGGAAGGGCTTTTCAAGGGTTGAAGCAAGGCACTACATGTCTGTCTATGAGGACTATGATTCACACAACAAAACTTTGCTAACTCTTGCAAAGTTGGATTTCAACTTAATGCAGAAAGTCCATCAGAAAGAACTAAGTGATATGACGAGGTGGTGGAAGGACTTGGACTTTGCAAACAAGCTACCTTTTGCAAGAGACAGAATAGTCGAGACCTACTTTTGGGCTTTAGCAACCATATTTGAACCTGAATATCACTTCGCTAGGACGATGGTATGCAAATATGGTGCTCTAACTACAGTGCAAGATGATGTTTACGATGTCTATGGCTCATATCAAGAACTAGAGCTCTATACAGATGCCATTGAGAGGTGGGACATTTCTGCTATTGATGATCAATTACCCCAGTGTTTGAAGGATTGTTATAAAGGACTGCTGGACAGCTACTCTGCATATGAAGAAAAGCTTGCGAAAGAAGGAAACTTGTATCGCCTTGACTATGCCAAAGAAGCAATCAAAATTCAACTTCGAGGTTACTTCCAGGAAGCCAAATGGTTGAAGGAAAAATACACACCAACAATGGATGAATATATTCCAAATGGACTTAACTCATCCTTCTATCCGATGGCAATCACATCCTTTGTTGGAATGGGAGGTCTTGTTACAAAAGACACCATGGATTGGGTGTTGAATGACCCTAAGATTGTTAAGGCTACAGCACTAACCGGCAGACTCCTCAATGACATGGCTGGCCACAAGTTTGAGCAAGACATAGAGCAGGGCGCCTCATCGGTAGAATGCTACATGAATCAATATGGTGTCACAGAAGAGGAAGCGAAAATCGAGCTGACCAAACAAAAGGATGCTGCATGGAAAGACATAAACCAAGAGTGGCTCGATCTCCACTCCAGCAATAGTATCCCCAAACCCCTCCTGCAGATCATTTTGAATCTTGCACGTTCTGGTGAAGTTCTTTACAAGAATGAAGATCTCTATACCAACGCTGAAGCTGGACTCAAGGGTTTTATAGTTTCTCTCCTCATCAAACCGGTGCCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

564

Amino Acids

64.81

Weight (kDa)

5.18

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 31 - 207 4.7e-62 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 264 - 503 1.4e-88 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 304 - 503 3e-49 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AasI GACNNNNNNGTC 2 cut(s) 140, 836
AccB1I GGYRCC 2 cut(s) 1412, 1681
AccB7I CCANNNNNTGG 1 cut(s) 1311
AcoI YGGCCR 1 cut(s) 1381
AcsI RAATTY 1 cut(s) 1149
AcuI CTGAAG 1 cut(s) 1656
AcyI GRCGYC 1 cut(s) 1413
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 3 cut(s) 852, 999, 1311
AflIII ACRYGT 3 cut(s) 151, 219, 669
AgeI ACCGGT 1 cut(s) 1678
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 1170
AluBI AGCT 8 cut(s) 32, 486, 814, 979, 1074, 1096, 1477, 1640
AluI AGCT 8 cut(s) 32, 486, 814, 979, 1074, 1096, 1477, 1640
Alw21I GWGCWC 2 cut(s) 922, 981
Alw26I GTCTC 2 cut(s) 822, 836
AoxI GGCC 1 cut(s) 1381
ApeKI GCWGC 3 cut(s) 47, 572, 1496
ApoI RAATTY 1 cut(s) 1149
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AsiGI ACCGGT 1 cut(s) 1678
Asp700I GAANNNNTTC 1 cut(s) 1221
AspLEI GCGC 1 cut(s) 1415
AsuHPI GGTGA 3 cut(s) 356, 541, 1607
AsuII TTCGAA 1 cut(s) 270
BalI TGGCCA 1 cut(s) 1383
BanI GGYRCC 2 cut(s) 1412, 1681
BanII GRGCYC 1 cut(s) 981
BarI GAAGNNNNNNTAC 2 cut(s) 1181, 1213
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 2 cut(s) 922, 981
BbvI GCAGC 3 cut(s) 34, 584, 1483
BccI CCATC 6 cut(s) 18, 335, 567, 762, 895, 1249
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 1 cut(s) 1559
BclI TGATCA 2 cut(s) 307, 1024
BcoDI GTCTC 2 cut(s) 822, 836
BfaI CTAG 3 cut(s) 131, 894, 974
BfmI CTRYAG 4 cut(s) 570, 927, 1344, 1565
BfoI RGCGCY 1 cut(s) 1416
BfuI GTATCC 1 cut(s) 1559
BglII AGATCT 1 cut(s) 1618
BisI GCNGC 3 cut(s) 48, 573, 1497
BlsI GCNGC 3 cut(s) 49, 574, 1498
Bme1390I CCNGG 1 cut(s) 1172
BmgBI CACGTC 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 1414, 1683
BmrFI CCNGG 1 cut(s) 1172
BmrI ACTGGG 1 cut(s) 1030
BmsI GCATC 4 cut(s) 32, 99, 979, 1483
BmuI ACTGGG 1 cut(s) 1030
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 3 cut(s) 12, 584, 1522
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 1631
BsaBI GATNNNNATC 1 cut(s) 1259
BsaHI GRCGYC 1 cut(s) 1413
BsaI GGTCTC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 1305
BsaWI WCCGGW 1 cut(s) 1678
BsaXI ACNNNNNCTCC 2 cut(s) 1275, 1305
Bsc4I CCNNNNNNNGG 3 cut(s) 852, 999, 1311
Bse118I RCCGGY 2 cut(s) 1355, 1678
Bse1I ACTGG 1 cut(s) 1036
Bse8I GATNNNNATC 1 cut(s) 1259
BseBI CCWGG 1 cut(s) 1172
BseDI CCNNGG 1 cut(s) 1305
BseGI GGATG 5 cut(s) 346, 1219, 1241, 1265, 1498
BseJI GATNNNNATC 1 cut(s) 1259
BseLI CCNNNNNNNGG 3 cut(s) 852, 999, 1311
BseNI ACTGG 1 cut(s) 1036
BseRI GAGGAG 2 cut(s) 1355, 1658
BseXI GCAGC 3 cut(s) 34, 584, 1483
BshFI GGCC 1 cut(s) 1383
BshNI GGYRCC 2 cut(s) 1412, 1681
BshTI ACCGGT 1 cut(s) 1678
BsiHKAI GWGCWC 2 cut(s) 922, 981
BsiSI CCGG 2 cut(s) 1356, 1679
BslFI GGGAC 2 cut(s) 454, 1019
BslI CCNNNNNNNGG 3 cut(s) 852, 999, 1311
BsmAI GTCTC 2 cut(s) 822, 836
BsmFI GGGAC 2 cut(s) 454, 1019
BsmI GAATGC 2 cut(s) 189, 1433
BsnI GGCC 1 cut(s) 1383
Bso31I GGTCTC 1 cut(s) 836
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 922, 981
Bsp143I GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
Bsp19I CCATGG 1 cut(s) 1305
BspANI GGCC 1 cut(s) 1383
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 1414, 1683
BspMAI CTGCAG 2 cut(s) 574, 1569
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 2 cut(s) 1412, 1681
BspTNI GGTCTC 1 cut(s) 836
BsrFI RCCGGY 2 cut(s) 1355, 1678
BsrI ACTGG 1 cut(s) 1036
BssAI RCCGGY 2 cut(s) 1355, 1678
BssECI CCNNGG 1 cut(s) 1305
BssMI GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
BssNI GRCGYC 1 cut(s) 1413
BssT1I CCWWGG 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 1 cut(s) 931
Bst6I CTCTTC 2 cut(s) 528, 1452
BstACI GRCGYC 1 cut(s) 1413
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 210, 1098, 1381
BstDEI CTNAG 4 cut(s) 482, 506, 767, 1329
BstDSI CCRYGG 1 cut(s) 1305
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 5 cut(s) 346, 1219, 1241, 1265, 1498
BstH2I RGCGCY 1 cut(s) 1416
BstHHI GCGC 1 cut(s) 1415
BstKTI GATC 7 cut(s) 103, 310, 546, 1027, 1531, 1572, 1621
BstMAI GTCTC 2 cut(s) 822, 836
BstMBI GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
BstMWI GCNNNNNNNGC 5 cut(s) 29, 80, 96, 214, 1139
BstNI CCWGG 1 cut(s) 1172
BstNSI RCATGY 3 cut(s) 155, 223, 673
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 1170
BstSFI CTRYAG 4 cut(s) 570, 927, 1344, 1565
BstV1I GCAGC 3 cut(s) 34, 584, 1483
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 1618
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 1 cut(s) 1618
BsuI GTATCC 1 cut(s) 1559
BsuRI GGCC 1 cut(s) 1383
BtgI CCRYGG 1 cut(s) 1305
BtgZI GCGATG 2 cut(s) 423, 480
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 5 cut(s) 346, 1219, 1241, 1265, 1498
BtsIMutI CAGTG 3 cut(s) 539, 936, 1043
Cac8I GCNNGC 3 cut(s) 210, 1098, 1381
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 1415
Cfr10I RCCGGY 2 cut(s) 1355, 1678
Csp6I GTAC 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 1678
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 4 cut(s) 482, 506, 767, 1329
DinI GGCGCC 1 cut(s) 1414
DpnI GATC 7 cut(s) 102, 309, 545, 1026, 1530, 1571, 1620
DpnII GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
DrdI GACNNNNNNGTC 2 cut(s) 140, 836
DseDI GACNNNNNNGTC 2 cut(s) 140, 836
EaeI YGGCCR 1 cut(s) 1381
Eam1104I CTCTTC 2 cut(s) 528, 1452
EarI CTCTTC 2 cut(s) 528, 1452
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 1 cut(s) 1305
Eco24I GRGCYC 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 836
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 1 cut(s) 1656
Eco91I GGTNACC 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 979
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 1170
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 981
EgeI GGCGCC 1 cut(s) 1414
EheI GGCGCC 1 cut(s) 1414
ErhI CCWWGG 1 cut(s) 1305
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 1080, 1112
FaqI GGGAC 2 cut(s) 454, 1019
FauNDI CATATG 1 cut(s) 1084
FbaI TGATCA 2 cut(s) 307, 1024
Fnu4HI GCNGC 3 cut(s) 48, 573, 1497
FokI GGATG 5 cut(s) 353, 1226, 1228, 1252, 1505
FriOI GRGCYC 1 cut(s) 981
Fsp4HI GCNGC 3 cut(s) 48, 573, 1497
FspBI CTAG 3 cut(s) 131, 894, 974
GlaI GCGC 1 cut(s) 1414
GluI GCNGC 3 cut(s) 48, 573, 1497
GsuI CTGGAG 3 cut(s) 12, 584, 1522
HaeII RGCGCY 1 cut(s) 1416
HaeIII GGCC 1 cut(s) 1383
HapII CCGG 2 cut(s) 1356, 1679
HhaI GCGC 1 cut(s) 1415
Hin1I GRCGYC 1 cut(s) 1413
Hin6I GCGC 1 cut(s) 1413
HinP1I GCGC 1 cut(s) 1413
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 484, 1094
HinfI GANTC 6 cut(s) 566, 692, 1362, 1438, 1579, 1644
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 2 cut(s) 1356, 1679
HphI GGTGA 3 cut(s) 356, 541, 1607
Hpy166II GTNNAC 2 cut(s) 202, 946
Hpy188I TCNGA 2 cut(s) 759, 1254
Hpy188III TCNNGA 6 cut(s) 14, 292, 305, 563, 841, 968
Hpy8I GTNNAC 2 cut(s) 202, 946
HpyAV CCTTC 6 cut(s) 631, 784, 1039, 1100, 1183, 1255
HpyCH4III ACNGT 1 cut(s) 931
HpyCH4IV ACGT 3 cut(s) 67, 135, 1588
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 80, 96, 214, 1139
HpyF3I CTNAG 4 cut(s) 482, 506, 767, 1329
HpySE526I ACGT 3 cut(s) 67, 135, 1588
Hsp92I GRCGYC 1 cut(s) 1413
HspAI GCGC 1 cut(s) 1413
KasI GGCGCC 1 cut(s) 1412
Ksp22I TGATCA 2 cut(s) 307, 1024
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
Lsp1109I GCAGC 3 cut(s) 34, 584, 1483
LweI GCATC 4 cut(s) 32, 99, 979, 1483
MaeI CTAG 3 cut(s) 131, 894, 974
MaeII ACGT 3 cut(s) 67, 135, 1588
MaeIII GTNAC 6 cut(s) 344, 434, 607, 1163, 1291, 1450
MalI GATC 7 cut(s) 102, 309, 545, 1026, 1530, 1571, 1620
MboI GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
MboII GAAGA 8 cut(s) 111, 182, 533, 538, 545, 1100, 1469, 1628
MflI RGATCY 1 cut(s) 1618
MhlI GDGCHC 2 cut(s) 922, 981
MlsI TGGCCA 1 cut(s) 1383
MluCI AATT 3 cut(s) 76, 1028, 1149
MluNI TGGCCA 1 cut(s) 1383
Mly113I GGCGCC 1 cut(s) 1413
MlyI GAGTC 3 cut(s) 575, 1356, 1638
MmeI TCCRAC 3 cut(s) 204, 708, 1255
Mox20I TGGCCA 1 cut(s) 1383
Mph1103I ATGCAT 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 1383
MseI TTAA 8 cut(s) 60, 138, 201, 447, 740, 1236, 1338, 1690
MslI CAYNNNNRTG 2 cut(s) 303, 315
Msp20I TGGCCA 1 cut(s) 1383
MspI CCGG 2 cut(s) 1356, 1679
MspR9I CCNGG 1 cut(s) 1172
Mva1269I GAATGC 2 cut(s) 189, 1433
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 5 cut(s) 29, 80, 96, 214, 1139
NarI GGCGCC 1 cut(s) 1413
NcoI CCATGG 1 cut(s) 1305
NdeI CATATG 1 cut(s) 1084
NdeII GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
NlaIV GGNNCC 2 cut(s) 1414, 1683
NmuCI GTSAC 3 cut(s) 344, 434, 1450
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 3 cut(s) 155, 223, 673
NspV TTCGAA 1 cut(s) 270
PagI TCATGA 1 cut(s) 304
PciI ACATGT 3 cut(s) 151, 219, 669
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 379
PctI GAATGC 2 cut(s) 189, 1433
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 3 cut(s) 692, 1438, 1579
PflMI CCANNNNNTGG 1 cut(s) 1311
PfoI TCCNGGA 1 cut(s) 1170
PinAI ACCGGT 1 cut(s) 1678
PkrI GCNGC 3 cut(s) 49, 574, 1498
PleI GAGTC 3 cut(s) 574, 1356, 1638
PluTI GGCGCC 1 cut(s) 1416
PpsI GAGTC 3 cut(s) 574, 1356, 1638
PscI ACATGT 3 cut(s) 151, 219, 669
PsiI TTATAA 1 cut(s) 1056
Psp124BI GAGCTC 1 cut(s) 981
Psp6I CCWGG 1 cut(s) 1170
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 2 cut(s) 1414, 1683
PstI CTGCAG 2 cut(s) 574, 1569
PsuI RGATCY 1 cut(s) 1618
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 2 cut(s) 303, 315
SacI GAGCTC 1 cut(s) 981
SaqAI TTAA 8 cut(s) 60, 138, 201, 447, 740, 1236, 1338, 1690
SatI GCNGC 3 cut(s) 48, 573, 1497
Sau3AI GATC 7 cut(s) 100, 307, 543, 1024, 1528, 1569, 1618
SchI GAGTC 3 cut(s) 575, 1356, 1638
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 2 cut(s) 922, 981
SfaNI GCATC 4 cut(s) 32, 99, 979, 1483
SfcI CTRYAG 4 cut(s) 570, 927, 1344, 1565
SfoI GGCGCC 1 cut(s) 1414
SfuI TTCGAA 1 cut(s) 270
SmiMI CAYNNNNRTG 2 cut(s) 303, 315
SmlI CTYRAG 1 cut(s) 1646
SmoI CTYRAG 1 cut(s) 1646
Sse9I AATT 3 cut(s) 76, 1028, 1149
SspDI GGCGCC 1 cut(s) 1412
SspMI CTAG 3 cut(s) 131, 894, 974
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 1 cut(s) 1170
StyI CCWWGG 1 cut(s) 1305
TaaI ACNGT 1 cut(s) 931
TaiI ACGT 3 cut(s) 70, 138, 1591
TaqI TCGA 9 cut(s) 54, 144, 270, 373, 382, 840, 1159, 1473, 1527
TasI AATT 3 cut(s) 76, 1028, 1149
TfiI GAWTC 3 cut(s) 692, 1438, 1579
Tru1I TTAA 8 cut(s) 60, 138, 201, 447, 740, 1236, 1338, 1690
Tru9I TTAA 8 cut(s) 60, 138, 201, 447, 740, 1236, 1338, 1690
TscAI CASTG 3 cut(s) 546, 936, 1043
TseFI GTSAC 3 cut(s) 344, 434, 1450
TseI GCWGC 3 cut(s) 47, 572, 1496
Tsp45I GTSAC 3 cut(s) 344, 434, 1450
TspDTI ATGAA 7 cut(s) 393, 503, 507, 1101, 1230, 1451, 1629
TspRI CASTG 3 cut(s) 546, 936, 1043
Van91I CCANNNNNTGG 1 cut(s) 1311
XapI RAATTY 1 cut(s) 1149
XceI RCATGY 3 cut(s) 155, 223, 673
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 3 cut(s) 131, 894, 974
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.