Rroxscaffold_1G00042960

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000053
Physical Location & Seq
Reverse (-)
61257389 .. 61259953
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042960.1

Sequence Viewer

Length: 1611 bp
ATGTCTCTCAACGTGGTCAGTGTAACTTCTCAAGCCCCTCCTACCCTGAATGCCTCTACTGATGCCGATAGTCGACGTTCGGCTAATTTCCATCCCAGCATTTGGGGAGATCAGTTTCTGTCTTATAACAACACTATGGAAACTAACATAAATGGTGAGCAACATGTCCAACAACTGAAGGAAGAAGTGAAGAGAATGCTAATGGCTCCGCCAGTTCAAACAAGTTTGGGAAAACTGGAGTTGATTGATGACATTCAACGCTTGGGTGTGTCTTACCATTTTGAATACGAAATTGACCAAACTATGCAACAAATTCACCACAATTTTAATGGTTACTGTGATGATGATCTGCACACTTGTGCTCTTCGTTTTCGCTTGCTGAGGCAGCATGGTTACAATGTTTCATGCGGTAAAAGTACGAGGAGAGGATTTTCTAGAAGAAGCACTAACCTTCACCACCACACATCTAGAGTCGGCAGTGCTAGGAAACCGTTTAAGCCCCCGCTTTTGAAACAAGTAAGGCATGCCTTGAATCAACCACTCCGAAAGGGCTTGCCGAGGCTAGAAGCGAGGCACTACATGTCTCTCCACCAGGAACTACACGGATCACGTAACCAAATTTTGCTGAGTTTTGCAAAGCTGGATTTCAACCTGCTCCAACAATTGCATCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGAGTTGGACTTTGCTAGCAAGCTACCTTTTGCAAGAGACAGAGTAATTGAGTGCTACTTTTGGATTTTGGGAGTCTACTTTGAGCCCAAGTATTACTTTGCCAGGAGGACACTAACTAAAGTTATTGCCATGACGTCCATTATCGATGACATTTATGATGTGTATGGCACGCTTGAAGAACTAGACCTCTTTACTAGAGCAATTGAGAGGTGGGACATCTCCGCCATGGATGTTATACCGGGGTATATGAAAGTCTGTTTCGAGGCACTGTTAGATGTCTATGCTGATACAGAACAAGAGCTTGCAAGCGAGGGAAGATTATATCGTATCGATTACGCAAAAGAAGCGATGAAGAGACAAGTTAGGGCATACCATGCTGAAGCAAAATGGTTCCACAAGAACTACACACCAACAATGGATGAATACATGGAAGTAGCCCTTGTCACTTCAGGCTACCCAATGCTTGCAACCACATCATTTGTTCTAATTATGGGAGATATTGTTACAAAAGACTCTTTTGAGTGGATCTTCAGTGACTCTAAGATTGTAAAGGCTTCATCAGTAGTTTGCAGACTCATGGATGACATTGTATCCCACAAGTTTGAGCAAAAGAGAGGAGATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCGACAGAAGAAGAAACCATAATTGAATTTCGTAAACAAGTGAGTGATGCATGGAAGGACATAAATGAAGAGTGCCTCCACCCTACACCTCTGGACATGCACCTCTTAATGGGAGTTCTGAATCTCACACGCGTGATGGATGTAATATACAAGTCTGAAGATGGCTACACTCATGCTGGAACCATTCTCAAAGATTTTGTAGCTTCTCTACTTATCGAACCTGTGCCTGTGCCTGTGCCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

536

Amino Acids

62.04

Weight (kDa)

6.24

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 34 - 136 5.5e-31 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 235 - 475 1e-103 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 275 - 475 2.5e-60 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AatII GACGTC 1 cut(s) 842
Acc36I ACCTGC 1 cut(s) 660
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 2 cut(s) 73, 780
AccII CGCG 1 cut(s) 1497
AciI CCGC 4 cut(s) 209, 408, 503, 927
AclWI GGATC 2 cut(s) 613, 1238
AcsI RAATTY 3 cut(s) 312, 618, 1391
AcuI CTGAAG 5 cut(s) 197, 1104, 1137, 1219, 1542
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 102, 1474
AflIII ACRYGT 3 cut(s) 163, 579, 1495
AgsI TTSAA 8 cut(s) 218, 257, 284, 511, 532, 649, 881, 1391
AjnI CCWGG 2 cut(s) 591, 806
AleI CACNNNNGTG 2 cut(s) 357, 1496
AluBI AGCT 4 cut(s) 640, 727, 1006, 1568
AluI AGCT 4 cut(s) 640, 727, 1006, 1568
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 4 cut(s) 9, 588, 735, 1054
AlwI GGATC 2 cut(s) 613, 1238
AlwNI CAGNNNCTG 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 3 cut(s) 312, 618, 1391
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 3 cut(s) 167, 308, 446
AsuNHI GCTAGC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 99, 1495, 1520
BciT130I CCWGG 2 cut(s) 593, 808
BciVI GTATCC 1 cut(s) 1306
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 4 cut(s) 9, 588, 735, 1054
BfaI CTAG 7 cut(s) 435, 468, 483, 563, 720, 887, 900
BfuAI ACCTGC 1 cut(s) 660
BfuI GTATCC 1 cut(s) 1306
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 593, 808, 945
BmiI GGNNCC 3 cut(s) 207, 1097, 1546
BmrFI CCNGG 3 cut(s) 593, 808, 945
BmsI GCATC 3 cut(s) 52, 676, 1402
BmtI GCTAGC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 945
Bsa29I ATCGAT 2 cut(s) 849, 1035
BsaAI YACGTR 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 839
BsaJI CCNNGG 4 cut(s) 557, 930, 944, 1332
BsaXI ACNNNNNCTCC 2 cut(s) 1191, 1221
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1474
Bse1I ACTGG 2 cut(s) 212, 240
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 593, 808
BseCI ATCGAT 2 cut(s) 849, 1035
BseDI CCNNGG 4 cut(s) 557, 930, 944, 1332
BseGI GGATG 5 cut(s) 91, 940, 1129, 1291, 1510
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 102, 1474
BseMII CTCAG 2 cut(s) 371, 617
BseNI ACTGG 2 cut(s) 212, 240
BseRI GAGGAG 2 cut(s) 436, 1335
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 1497
BshVI ATCGAT 2 cut(s) 849, 1035
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 944
BslFI GGGAC 1 cut(s) 932
BslI CCNNNNNNNGG 2 cut(s) 102, 1474
BsmAI GTCTC 4 cut(s) 9, 588, 735, 1054
BsmFI GGGAC 1 cut(s) 932
BsmI GAATGC 2 cut(s) 55, 201
Bsp1286I GDGCHC 2 cut(s) 364, 792
Bsp143I GATC 4 cut(s) 109, 346, 605, 1230
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 4 cut(s) 209, 408, 503, 927
BspCNI CTCAG 2 cut(s) 372, 618
BspDI ATCGAT 2 cut(s) 849, 1035
BspFNI CGCG 1 cut(s) 1497
BspLI GGNNCC 3 cut(s) 207, 1097, 1546
BspMI ACCTGC 1 cut(s) 660
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 2 cut(s) 613, 1238
BspQI GCTCTTC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 212, 240
BssECI CCNNGG 4 cut(s) 557, 930, 944, 1332
BssMI GATC 4 cut(s) 109, 346, 605, 1230
BssNI GRCGYC 1 cut(s) 839
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 2 cut(s) 593, 808
Bst4CI ACNGT 4 cut(s) 338, 492, 975, 1364
Bst6I CTCTTC 4 cut(s) 185, 369, 1052, 1428
BstACI GRCGYC 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 9 cut(s) 377, 525, 554, 721, 725, 875, 1008, 1012, 1170
BstDEI CTNAG 4 cut(s) 380, 626, 680, 1245
BstDSI CCRYGG 1 cut(s) 930
BstF5I GGATG 5 cut(s) 91, 940, 1129, 1291, 1510
BstFNI CGCG 1 cut(s) 1497
BstKTI GATC 4 cut(s) 112, 349, 608, 1233
BstMAI GTCTC 4 cut(s) 9, 588, 735, 1054
BstMBI GATC 4 cut(s) 109, 346, 605, 1230
BstMWI GCNNNNNNNGC 3 cut(s) 385, 1049, 1079
BstNI CCWGG 2 cut(s) 593, 808
BstNSI RCATGY 4 cut(s) 167, 527, 583, 1465
BstSCI CCNGG 3 cut(s) 591, 806, 943
BstUI CGCG 1 cut(s) 1497
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 1230
BstYI RGATCY 1 cut(s) 1230
Bsu15I ATCGAT 2 cut(s) 849, 1035
BsuI GTATCC 1 cut(s) 1306
BsuTUI ATCGAT 2 cut(s) 849, 1035
BtgI CCRYGG 1 cut(s) 930
BtgZI GCGATG 1 cut(s) 1067
BtsCI GGATG 5 cut(s) 91, 940, 1129, 1291, 1510
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 4 cut(s) 25, 484, 971, 1243
BveI ACCTGC 1 cut(s) 660
Cac8I GCNNGC 9 cut(s) 377, 525, 554, 721, 725, 875, 1008, 1012, 1170
CaiI CAGNNNCTG 1 cut(s) 118
ClaI ATCGAT 2 cut(s) 849, 1035
Csp6I GTAC 1 cut(s) 417
CspCI CAANNNNNGTGG 2 cut(s) 1165, 1200
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 380, 626, 680, 1245
DpnI GATC 4 cut(s) 111, 348, 607, 1232
DpnII GATC 4 cut(s) 109, 346, 605, 1230
Eam1104I CTCTTC 4 cut(s) 185, 369, 1052, 1428
EarI CTCTTC 4 cut(s) 185, 369, 1052, 1428
EciI GGCGGA 2 cut(s) 198, 916
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 792
Eco57I CTGAAG 5 cut(s) 197, 1104, 1137, 1219, 1542
EcoRII CCWGG 2 cut(s) 591, 806
EcoT14I CCWWGG 1 cut(s) 930
EcoT22I ATGCAT 1 cut(s) 1417
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 930
FalI AAGNNNNNCTT 4 cut(s) 785, 817, 1128, 1160
FaqI GGGAC 1 cut(s) 932
FauI CCCGC 1 cut(s) 510
FblI GTMKAC 2 cut(s) 73, 780
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 5 cut(s) 78, 947, 1136, 1298, 1517
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 7 cut(s) 435, 468, 483, 563, 720, 887, 900
GluI GCNGC 1 cut(s) 386
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 1 cut(s) 944
Hin1I GRCGYC 1 cut(s) 839
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 7 cut(s) 471, 532, 777, 1217, 1241, 1278, 1486
HpaII CCGG 1 cut(s) 944
HphI GGTGA 3 cut(s) 167, 308, 446
Hpy166II GTNNAC 3 cut(s) 74, 781, 1400
Hpy188I TCNGA 4 cut(s) 545, 672, 1485, 1522
Hpy188III TCNNGA 3 cut(s) 435, 468, 1457
Hpy8I GTNNAC 3 cut(s) 74, 781, 1400
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 172, 461, 697, 1414
HpyCH4III ACNGT 4 cut(s) 338, 492, 975, 1364
HpyCH4IV ACGT 4 cut(s) 12, 76, 610, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 385, 1049, 1079
HpyF3I CTNAG 4 cut(s) 380, 626, 680, 1245
HpySE526I ACGT 4 cut(s) 12, 76, 610, 839
Hsp92I GRCGYC 1 cut(s) 839
Kzo9I GATC 4 cut(s) 109, 346, 605, 1230
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 211, 660
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 3 cut(s) 52, 676, 1402
MaeI CTAG 7 cut(s) 435, 468, 483, 563, 720, 887, 900
MaeII ACGT 4 cut(s) 12, 76, 610, 839
MaeIII GTNAC 8 cut(s) 22, 332, 392, 611, 1147, 1207, 1238, 1346
MalI GATC 4 cut(s) 111, 348, 607, 1232
MboI GATC 4 cut(s) 109, 346, 605, 1230
MfeI CAATTG 2 cut(s) 662, 906
MflI RGATCY 1 cut(s) 1230
MhlI GDGCHC 2 cut(s) 364, 792
MluI ACGCGT 1 cut(s) 1495
MlyI GAGTC 5 cut(s) 480, 786, 1211, 1235, 1272
MmeI TCCRAC 3 cut(s) 193, 682, 690
Mph1103I ATGCAT 1 cut(s) 1417
MseI TTAA 3 cut(s) 327, 495, 1472
MslI CAYNNNNRTG 2 cut(s) 357, 1496
MspI CCGG 1 cut(s) 944
MspR9I CCNGG 3 cut(s) 593, 808, 945
MunI CAATTG 2 cut(s) 662, 906
Mva1269I GAATGC 2 cut(s) 55, 201
MvaI CCWGG 2 cut(s) 593, 808
MvnI CGCG 1 cut(s) 1497
MwoI GCNNNNNNNGC 3 cut(s) 385, 1049, 1079
NciI CCSGG 1 cut(s) 945
NcoI CCATGG 1 cut(s) 930
NdeII GATC 4 cut(s) 109, 346, 605, 1230
NheI GCTAGC 1 cut(s) 719
NlaIV GGNNCC 3 cut(s) 207, 1097, 1546
NmeAIII GCCGAG 2 cut(s) 582, 1313
NmuCI GTSAC 2 cut(s) 1147, 1238
NsiI ATGCAT 1 cut(s) 1417
NspI RCATGY 4 cut(s) 167, 527, 583, 1465
OliI CACNNNNGTG 2 cut(s) 357, 1496
PaeI GCATGC 1 cut(s) 527
PciI ACATGT 2 cut(s) 163, 579
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 2 cut(s) 55, 201
PfeI GAWTC 2 cut(s) 532, 1486
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 5 cut(s) 479, 785, 1211, 1235, 1272
PpsI GAGTC 5 cut(s) 479, 785, 1211, 1235, 1272
Ppu21I YACGTR 1 cut(s) 611
PscI ACATGT 2 cut(s) 163, 579
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 591, 806
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 2 cut(s) 591, 806
PspN4I GGNNCC 3 cut(s) 207, 1097, 1546
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 1230
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 357, 1496
SalI GTCGAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 327, 495, 1472
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 4 cut(s) 109, 346, 605, 1230
SchI GAGTC 5 cut(s) 480, 786, 1211, 1235, 1272
ScrFI CCNGG 3 cut(s) 593, 808, 945
SduI GDGCHC 2 cut(s) 364, 792
SfaNI GCATC 3 cut(s) 52, 676, 1402
SmiMI CAYNNNNRTG 2 cut(s) 357, 1496
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SphI GCATGC 1 cut(s) 527
SsiI CCGC 4 cut(s) 209, 408, 503, 927
SspMI CTAG 7 cut(s) 435, 468, 483, 563, 720, 887, 900
StyD4I CCNGG 3 cut(s) 591, 806, 943
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 4 cut(s) 338, 492, 975, 1364
TaiI ACGT 4 cut(s) 15, 79, 613, 842
TaqI TCGA 5 cut(s) 73, 849, 966, 1035, 1581
TfiI GAWTC 2 cut(s) 532, 1486
Tru1I TTAA 3 cut(s) 327, 495, 1472
Tru9I TTAA 3 cut(s) 327, 495, 1472
TscAI CASTG 4 cut(s) 25, 484, 978, 1243
TseFI GTSAC 2 cut(s) 1147, 1238
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 2 cut(s) 1147, 1238
TspDTI ATGAA 7 cut(s) 393, 968, 1070, 1140, 1251, 1367, 1446
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 4 cut(s) 25, 484, 978, 1243
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 3 cut(s) 312, 618, 1391
XbaI TCTAGA 2 cut(s) 434, 467
XceI RCATGY 4 cut(s) 167, 527, 583, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 73, 780
XspI CTAG 7 cut(s) 435, 468, 483, 563, 720, 887, 900
ZraI GACGTC 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.