FvH4_6g19050

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000053
Physical Location & Seq
Forward (+)
12616380 .. 12619239
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19050.t2

Sequence Viewer

Length: 1719 bp
ATGTCAACCCAATTAGCTTCTCGTTTTGTCATCAAAAGAACATCAGCTTCTCTTTCAATCCAAACACCAAAAATTGTTAACCCTGAAATCCTTCGGCGCACTGCGATTTATCACCCTAGCATCTGGGGAGATCGGTTCAGCAACTATGAAGAATCCCAGGACCCTATGACTCGATCCCTTCTGCAAAAGCAGGTTAATCAATTGAAAGTAGTAGTGAAAAGGGAAGTTTTCAGAAATGCTTCAAGTGACTTTTCGACTCAGATGAAGTCAATCGATGCGATGCAGCGTCTCGGCATTGCATACCATTTCGAAAGAGACATAGAGAACGCACTCGAGCAGGCTCATGCTGCATGTGTTCATGATGGTAACTTGTACAATGTTGCTCTTCGTTTTCGATTATTGCGGGAACATGGATATAATGTTTCATCTGATATATTCAAGAGGTTCAAAGATGCAAATGATAACTTCAAGGAAGGCTTGACTTCCGATCTGCCCGGTATGCTAAGTTTTTATGAGGCAACACATCTAAGGATCCATGGTGAAGATATTCTAGAAGATGGTCTACATTTCACTACAGCTCACCTTGAGTCATCTGCAAACGATGTAAATCATCCACTGGCAGCCCAGATAACTCAAGCCTTAGAGAGACCGCTACGAAAATTTCCAGAGAGATTATACGCGAGGCATTACATATCAATCTTCCCGGATGATCCAAAATCTTTGCATCATGAAGCAGTAGCTTTATTATTGAAACTTGCAAAGTTAGATTTCAATCTTGTTCAGTCTTTACACAAGAAGGAGCTCAGTGAGATTATTAGATGGTGGGATGAACTAGATTTTGAAAGGGAGCTACCATTCGCGAGAAATAGGATTGTTGAGCTGTACTTTTGGACATTGGGAGTATATGCTGAACCCCAGTACTCAAAGGCAAGACATTTCTTAACAAAAGCTATTGCATTTGGATCAGTTTTGGATGACATCTACGATGCATATGGTTCATTCGAAGAACTCAAAATATTTACTGAAGCAATTCAAAGGTGGGATGTCAATTGTATAGATGAACTGCCAGACTATATGAAGATCTTCTATCGTAGACTGTTCATTTTGTGCAATGAAATTGAGGTGGAGATGGTGAAGCAAGGAAAATCATACCGAGTTCACTTCGCAAAAGAAATTATAAAAGCTCAAGCTCGACTATACTTTGCGGAGGCACAGTGGCTTCATGAAAACTACACTCCAAGTATGGACGAGTATATGGAGGTCTCTGTACGTTCGGTTGGAAACAGTTTCCTTTCGACAATGTCGCTAGTCGGAATGGGAGACATTGTAACCAAGGATGCATTTGAGTGGTTGGCAAATCACCCTAAAATTCTTAGAGCTTCCAATATTATTTTTAGGCTCATGGATGACCTTGTTTCCGGCAAGTTTGAGAAAGAGAGAGAGCATATTGCTTCAAGTATTGATTGTTACATGAAGCAATATGGGGTATCGGAGCAAGAGACGGTTGATATTTTTAACAAAAAAGTTGTAGATTCGTGGAAGGATATAAACGAAGAGTTTTTGAGACCGACTGCTGTTCCTGTGCCAGTGCTTACTCGTGTTCTTAACCTAACCAGAGTTGTTGATCTTCTTTACAAAAAGGATGATGAGTACACACGAGTGGGAGATGTGATGAAAGATGGTGTTGCCTCCCTCCTAATTCATCCGGTACCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

573

Amino Acids

66.44

Weight (kDa)

6.02

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 10 - 85 4.8e-21 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 148 - 344 2.7e-78 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 187 - 344 1.4e-39 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1178
Acc36I ACCTGC 1 cut(s) 181
Acc65I GGTACC 1 cut(s) 1708
AccB1I GGYRCC 1 cut(s) 1708
AccI GTMKAC 2 cut(s) 562, 1093
AccII CGCG 2 cut(s) 680, 860
AciI CCGC 3 cut(s) 403, 650, 1205
AclWI GGATC 5 cut(s) 168, 526, 539, 704, 970
AcsI RAATTY 2 cut(s) 659, 1368
AcuI CTGAAG 1 cut(s) 1044
AfaI GTAC 6 cut(s) 374, 884, 920, 1269, 1652, 1710
AjnI CCWGG 1 cut(s) 156
AleI CACNNNNGTG 1 cut(s) 1658
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 7 cut(s) 293, 309, 640, 1267, 1314, 1493, 1558
AlwI GGATC 5 cut(s) 168, 526, 539, 704, 970
Ama87I CYCGRG 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 283, 347, 620
ApoI RAATTY 2 cut(s) 659, 1368
Asp700I GAANNNNTTC 5 cut(s) 90, 238, 546, 1029, 1082
Asp718I GGTACC 1 cut(s) 1708
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 495, 704
AsuHPI GGTGA 5 cut(s) 104, 551, 572, 1144, 1352
AsuII TTCGAA 2 cut(s) 309, 1002
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 160
BaeI ACNNNNGTAYC 1 cut(s) 1700
BamHI GGATCC 1 cut(s) 531
BanI GGYRCC 1 cut(s) 1708
BanII GRGCYC 1 cut(s) 804
BarI GAAGNNNNNNTAC 2 cut(s) 546, 578
BauI CACGAG 2 cut(s) 1596, 1656
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 3 cut(s) 295, 334, 632
BccI CCATC 5 cut(s) 356, 551, 813, 1123, 1673
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 2 cut(s) 495, 704
BcoDI GTCTC 7 cut(s) 293, 309, 640, 1267, 1314, 1493, 1558
BfaI CTAG 4 cut(s) 117, 551, 833, 1307
BfmI CTRYAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 1080
BisI GCNGC 3 cut(s) 284, 348, 621
BlsI GCNGC 3 cut(s) 285, 349, 622
BmcAI AGTACT 1 cut(s) 920
Bme1390I CCNGG 3 cut(s) 158, 495, 704
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 162, 533, 1710
BmrFI CCNGG 3 cut(s) 158, 495, 704
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 7 cut(s) 129, 265, 270, 442, 733, 976, 1327
BmuI ACTGGG 1 cut(s) 910
Bpu14I TTCGAA 2 cut(s) 309, 1002
BpuEI CTTGAG 3 cut(s) 605, 618, 1170
BpuMI CCSGG 2 cut(s) 495, 704
Bsa29I ATCGAT 1 cut(s) 273
BsaBI GATNNNNATC 2 cut(s) 606, 771
BsaI GGTCTC 3 cut(s) 640, 1267, 1558
BsaJI CCNNGG 3 cut(s) 156, 535, 1332
BsaWI WCCGGW 1 cut(s) 1705
BsaXI ACNNNNNCTCC 4 cut(s) 1199, 1229, 1311, 1341
Bse1I ACTGG 3 cut(s) 621, 916, 1586
Bse3DI GCAATG 2 cut(s) 294, 1117
Bse8I GATNNNNATC 2 cut(s) 606, 771
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 156, 535, 1332
BseGI GGATG 9 cut(s) 610, 712, 832, 979, 1048, 1342, 1411, 1648, 1702
BseJI GATNNNNATC 2 cut(s) 606, 771
BseMI GCAATG 2 cut(s) 294, 1117
BseMII CTCAG 2 cut(s) 272, 817
BseNI ACTGG 3 cut(s) 621, 916, 1586
BseXI GCAGC 3 cut(s) 295, 334, 632
Bsh1236I CGCG 2 cut(s) 680, 860
BshNI GGYRCC 1 cut(s) 1708
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 804
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 4 cut(s) 495, 704, 1419, 1706
BsmAI GTCTC 7 cut(s) 293, 309, 640, 1267, 1314, 1493, 1558
BsmBI CGTCTC 2 cut(s) 293, 1493
Bso31I GGTCTC 3 cut(s) 640, 1267, 1558
BsoBI CYCGRG 1 cut(s) 332
Bsp119I TTCGAA 2 cut(s) 309, 1002
Bsp1286I GDGCHC 1 cut(s) 804
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
Bsp19I CCATGG 1 cut(s) 535
Bsp68I TCGCGA 1 cut(s) 860
BspACI CCGC 3 cut(s) 403, 650, 1205
BspCNI CTCAG 2 cut(s) 271, 816
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 2 cut(s) 680, 860
BspHI TCATGA 3 cut(s) 358, 727, 1222
BspLI GGNNCC 3 cut(s) 162, 533, 1710
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 5 cut(s) 168, 526, 539, 704, 970
BspQI GCTCTTC 1 cut(s) 390
BspT104I TTCGAA 2 cut(s) 309, 1002
BspT107I GGYRCC 1 cut(s) 1708
BspTNI GGTCTC 3 cut(s) 640, 1267, 1558
BsrDI GCAATG 2 cut(s) 294, 1117
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 3 cut(s) 621, 916, 1586
BssECI CCNNGG 3 cut(s) 156, 535, 1332
BssMI GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
BssSI CACGAG 2 cut(s) 1596, 1656
BssT1I CCWWGG 2 cut(s) 535, 1332
Bst2BI CACGAG 2 cut(s) 1596, 1656
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 4 cut(s) 1098, 1215, 1286, 1504
Bst6I CTCTTC 2 cut(s) 390, 1548
BstAUI TGTACA 1 cut(s) 372
BstBI TTCGAA 2 cut(s) 309, 1002
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 6 cut(s) 258, 503, 527, 640, 803, 1373
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 9 cut(s) 610, 712, 832, 979, 1048, 1342, 1411, 1648, 1702
BstFNI CGCG 2 cut(s) 680, 860
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 8 cut(s) 133, 176, 490, 534, 712, 965, 1083, 1627
BstMAI GTCTC 7 cut(s) 293, 309, 640, 1267, 1314, 1493, 1558
BstMBI GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
BstMWI GCNNNNNNNGC 2 cut(s) 347, 499
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 156, 493, 702
BstSFI CTRYAG 1 cut(s) 573
BstUI CGCG 2 cut(s) 680, 860
BstV1I GCAGC 3 cut(s) 295, 334, 632
BstX2I RGATCY 2 cut(s) 531, 1080
BstYI RGATCY 2 cut(s) 531, 1080
Bsu15I ATCGAT 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 293
BtsCI GGATG 9 cut(s) 610, 712, 832, 979, 1048, 1342, 1411, 1648, 1702
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 5 cut(s) 99, 614, 811, 1220, 1593
BtuMI TCGCGA 1 cut(s) 860
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 3 cut(s) 358, 727, 1222
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 160
ClaI ATCGAT 1 cut(s) 273
CseI GACGC 1 cut(s) 275
Csp6I GTAC 6 cut(s) 373, 883, 919, 1268, 1651, 1709
CviAII CATG 9 cut(s) 344, 351, 359, 410, 536, 728, 1223, 1402, 1471
CviQI GTAC 6 cut(s) 373, 883, 919, 1268, 1651, 1709
DdeI CTNAG 6 cut(s) 258, 503, 527, 640, 803, 1373
DpnI GATC 8 cut(s) 132, 175, 489, 533, 711, 964, 1082, 1626
DpnII GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
Eam1104I CTCTTC 2 cut(s) 390, 1548
EarI CTCTTC 2 cut(s) 390, 1548
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 535, 1332
Eco24I GRGCYC 1 cut(s) 804
Eco31I GGTCTC 3 cut(s) 640, 1267, 1558
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 1044
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 802
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 535, 1332
EcoT22I ATGCAT 2 cut(s) 991, 1342
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 2 cut(s) 535, 1332
Esp3I CGTCTC 2 cut(s) 293, 1493
FaeI CATG 9 cut(s) 347, 354, 362, 413, 539, 731, 1226, 1405, 1474
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 9 cut(s) 343, 350, 358, 409, 535, 727, 1222, 1401, 1470
FauI CCCGC 1 cut(s) 396
FauNDI CATATG 1 cut(s) 991
FblI GTMKAC 2 cut(s) 562, 1093
Fnu4HI GCNGC 3 cut(s) 284, 348, 621
FokI GGATG 9 cut(s) 597, 719, 839, 986, 1055, 1349, 1418, 1655, 1689
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 3 cut(s) 284, 348, 621
FspBI CTAG 4 cut(s) 117, 551, 833, 1307
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 284, 348, 621
HapII CCGG 4 cut(s) 495, 704, 1419, 1706
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 99
Hin1II CATG 9 cut(s) 347, 354, 362, 413, 539, 731, 1226, 1405, 1474
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 2 cut(s) 6, 79
HindII GTYRAC 2 cut(s) 6, 79
HinfI GANTC 5 cut(s) 152, 169, 256, 587, 1532
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 4 cut(s) 495, 704, 1419, 1706
HphI GGTGA 5 cut(s) 104, 551, 572, 1144, 1352
Hpy166II GTNNAC 6 cut(s) 6, 79, 563, 1094, 1159, 1653
Hpy188I TCNGA 6 cut(s) 233, 261, 430, 487, 1313, 1492
Hpy188III TCNNGA 8 cut(s) 359, 439, 551, 665, 728, 859, 1223, 1716
Hpy8I GTNNAC 6 cut(s) 6, 79, 563, 1094, 1159, 1653
HpyAV CCTTC 5 cut(s) 101, 188, 467, 790, 1534
HpyCH4III ACNGT 4 cut(s) 1098, 1215, 1286, 1504
HpyCH4IV ACGT 1 cut(s) 1270
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 499
HpyF3I CTNAG 6 cut(s) 258, 503, 527, 640, 803, 1373
HpySE526I ACGT 1 cut(s) 1270
Hsp92II CATG 9 cut(s) 347, 354, 362, 413, 539, 731, 1226, 1405, 1474
HspAI GCGC 1 cut(s) 97
KpnI GGTACC 1 cut(s) 1712
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 799, 847, 1492
Lsp1109I GCAGC 3 cut(s) 295, 334, 632
LweI GCATC 7 cut(s) 129, 265, 270, 442, 733, 976, 1327
MaeI CTAG 4 cut(s) 117, 551, 833, 1307
MaeII ACGT 1 cut(s) 1270
MaeIII GTNAC 4 cut(s) 245, 365, 1327, 1466
MalI GATC 8 cut(s) 132, 175, 489, 533, 711, 964, 1082, 1626
MboI GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
MfeI CAATTG 2 cut(s) 200, 1048
MflI RGATCY 2 cut(s) 531, 1080
MhlI GDGCHC 1 cut(s) 804
MlyI GAGTC 3 cut(s) 163, 250, 596
MmeI TCCRAC 2 cut(s) 1258, 1291
MnlI CCTC 8 cut(s) 435, 508, 675, 1114, 1201, 1252, 1699, 1703
Mph1103I ATGCAT 2 cut(s) 991, 1342
MroXI GAANNNNTTC 5 cut(s) 90, 238, 546, 1029, 1082
MseI TTAA 5 cut(s) 78, 195, 941, 1515, 1605
MslI CAYNNNNRTG 2 cut(s) 1345, 1658
MspI CCGG 4 cut(s) 495, 704, 1419, 1706
MspR9I CCNGG 3 cut(s) 158, 495, 704
MunI CAATTG 2 cut(s) 200, 1048
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 2 cut(s) 680, 860
MwoI GCNNNNNNNGC 2 cut(s) 347, 499
NciI CCSGG 2 cut(s) 495, 704
NcoI CCATGG 1 cut(s) 535
NdeI CATATG 1 cut(s) 991
NdeII GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
NlaIII CATG 9 cut(s) 347, 354, 362, 413, 539, 731, 1226, 1405, 1474
NlaIV GGNNCC 3 cut(s) 162, 533, 1710
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 245
NruI TCGCGA 1 cut(s) 860
NsiI ATGCAT 2 cut(s) 991, 1342
NspI RCATGY 1 cut(s) 354
NspV TTCGAA 2 cut(s) 309, 1002
OliI CACNNNNGTG 1 cut(s) 1658
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 3 cut(s) 358, 727, 1222
PciSI GCTCTTC 1 cut(s) 390
PdmI GAANNNNTTC 5 cut(s) 90, 238, 546, 1029, 1082
PfeI GAWTC 2 cut(s) 152, 1532
PflFI GACNNNGTC 1 cut(s) 1300
PfoI TCCNGGA 1 cut(s) 702
PkrI GCNGC 3 cut(s) 285, 349, 622
PleI GAGTC 3 cut(s) 163, 250, 595
PpsI GAGTC 3 cut(s) 163, 250, 595
PpuMI RGGWCCY 1 cut(s) 160
PsiI TTATAA 1 cut(s) 1178
Psp124BI GAGCTC 1 cut(s) 804
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 3 cut(s) 162, 533, 1710
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
PspXI VCTCGAGB 1 cut(s) 332
PsuI RGATCY 2 cut(s) 531, 1080
PsyI GACNNNGTC 1 cut(s) 1300
RruI TCGCGA 1 cut(s) 860
RsaI GTAC 6 cut(s) 374, 884, 920, 1269, 1652, 1710
RsaNI GTAC 6 cut(s) 373, 883, 919, 1268, 1651, 1709
RseI CAYNNNNRTG 2 cut(s) 1345, 1658
SacI GAGCTC 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 5 cut(s) 78, 195, 941, 1515, 1605
SatI GCNGC 3 cut(s) 284, 348, 621
Sau3AI GATC 8 cut(s) 130, 173, 487, 531, 709, 962, 1080, 1624
Sau96I GGNCC 1 cut(s) 160
ScaI AGTACT 1 cut(s) 920
SchI GAGTC 3 cut(s) 163, 250, 596
ScrFI CCNGG 3 cut(s) 158, 495, 704
SduI GDGCHC 1 cut(s) 804
SfaNI GCATC 7 cut(s) 129, 265, 270, 442, 733, 976, 1327
SfcI CTRYAG 1 cut(s) 573
Sfr274I CTCGAG 1 cut(s) 332
SfuI TTCGAA 2 cut(s) 309, 1002
SinI GGWCC 1 cut(s) 160
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 1345, 1658
SmlI CTYRAG 4 cut(s) 332, 584, 633, 1185
SmoI CTYRAG 4 cut(s) 332, 584, 633, 1185
SsiI CCGC 3 cut(s) 403, 650, 1205
SspI AATATT 2 cut(s) 1017, 1387
SspMI CTAG 4 cut(s) 117, 551, 833, 1307
SstI GAGCTC 1 cut(s) 804
StyD4I CCNGG 3 cut(s) 156, 493, 702
StyI CCWWGG 2 cut(s) 535, 1332
TaaI ACNGT 4 cut(s) 1098, 1215, 1286, 1504
TaiI ACGT 1 cut(s) 1273
TaqI TCGA 9 cut(s) 172, 254, 273, 309, 333, 394, 1002, 1192, 1295
TaqII GACCGA 1 cut(s) 1582
TatI WGTACW 4 cut(s) 372, 882, 918, 1650
TfiI GAWTC 2 cut(s) 152, 1532
Tru1I TTAA 5 cut(s) 78, 195, 941, 1515, 1605
Tru9I TTAA 5 cut(s) 78, 195, 941, 1515, 1605
TscAI CASTG 5 cut(s) 106, 621, 811, 1220, 1593
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 3 cut(s) 283, 347, 620
Tsp45I GTSAC 1 cut(s) 245
TspRI CASTG 5 cut(s) 106, 621, 811, 1220, 1593
Tth111I GACNNNGTC 1 cut(s) 1300
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 2 cut(s) 659, 1368
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 332
XmiI GTMKAC 2 cut(s) 562, 1093
XmnI GAANNNNTTC 5 cut(s) 90, 238, 546, 1029, 1082
XspI CTAG 4 cut(s) 117, 551, 833, 1307
ZrmI AGTACT 1 cut(s) 920
Zsp2I ATGCAT 2 cut(s) 991, 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.