(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 29 - 201 | 1.2e-58 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 258 - 374 | 3.1e-43 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 299 - 364 | 1.1e-15 | Terpene synthase family 2, C-terminal metal binding |
| Terpene_synth_C | PF03936 | 376 - 415 | 8.4e-10 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 376 - 415 | 5e-08 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1038 |
| AccB1I | GGYRCC | 1 cut(s) | 1184 |
| AccI | GTMKAC | 1 cut(s) | 1332 |
| AccII | CGCG | 1 cut(s) | 672 |
| AclWI | GGATC | 1 cut(s) | 1001 |
| AcoI | YGGCCR | 1 cut(s) | 32 |
| AcsI | RAATTY | 3 cut(s) | 279, 291, 425 |
| AcuI | CTGAAG | 4 cut(s) | 48, 530, 993, 1397 |
| AfaI | GTAC | 3 cut(s) | 473, 854, 1357 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 489, 742 |
| AflIII | ACRYGT | 3 cut(s) | 145, 792, 1144 |
| AgsI | TTSAA | 8 cut(s) | 217, 236, 262, 286, 397, 406, 718, 1070 |
| AjiI | CACGTC | 2 cut(s) | 148, 784 |
| Alw26I | GTCTC | 2 cut(s) | 9, 804 |
| AlwI | GGATC | 1 cut(s) | 1001 |
| AoxI | GGCC | 1 cut(s) | 32 |
| ApeKI | GCWGC | 1 cut(s) | 607 |
| ApoI | RAATTY | 3 cut(s) | 279, 291, 425 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 978, 1257 |
| AspS9I | GGNCC | 1 cut(s) | 187 |
| AsuHPI | GGTGA | 3 cut(s) | 181, 287, 523 |
| AsuII | TTCGAA | 3 cut(s) | 616, 858, 951 |
| AvaII | GGWCC | 1 cut(s) | 187 |
| BaeGI | GKGCMC | 1 cut(s) | 1288 |
| BanI | GGYRCC | 1 cut(s) | 1184 |
| BbvCI | CCTCAGC | 1 cut(s) | 1153 |
| BbvI | GCAGC | 1 cut(s) | 619 |
| BccI | CCATC | 5 cut(s) | 178, 269, 492, 744, 1340 |
| BceAI | ACGGC | 2 cut(s) | 47, 958 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 596, 630 |
| BciVI | GTATCC | 1 cut(s) | 486 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcoDI | GTCTC | 2 cut(s) | 9, 804 |
| BfaI | CTAG | 5 cut(s) | 242, 512, 642, 722, 879 |
| BfuI | GTATCC | 1 cut(s) | 486 |
| BisI | GCNGC | 1 cut(s) | 608 |
| BlsI | GCNGC | 1 cut(s) | 609 |
| BmcAI | AGTACT | 1 cut(s) | 1357 |
| Bme18I | GGWCC | 1 cut(s) | 187 |
| BmgBI | CACGTC | 2 cut(s) | 148, 784 |
| BmgT120I | GGNCC | 1 cut(s) | 187 |
| BmiI | GGNNCC | 2 cut(s) | 189, 1186 |
| BmsI | GCATC | 5 cut(s) | 168, 443, 633, 920, 925 |
| BpmI | CTGGAG | 1 cut(s) | 980 |
| Bpu10I | CCTNAGC | 2 cut(s) | 359, 1153 |
| Bpu14I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BpuEI | CTTGAG | 2 cut(s) | 6, 158 |
| BsaJI | CCNNGG | 4 cut(s) | 117, 906, 940, 1280 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 489, 742 |
| Bse1I | ACTGG | 1 cut(s) | 963 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 382 |
| BseDI | CCNNGG | 4 cut(s) | 117, 906, 940, 1280 |
| BseGI | GGATG | 4 cut(s) | 890, 997, 1261, 1330 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 489, 742 |
| BseMI | GCAATG | 2 cut(s) | 42, 382 |
| BseMII | CTCAG | 1 cut(s) | 1167 |
| BseNI | ACTGG | 1 cut(s) | 963 |
| BseSI | GKGCMC | 1 cut(s) | 1288 |
| BseXI | GCAGC | 1 cut(s) | 619 |
| BseYI | CCCAGC | 1 cut(s) | 837 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| Bsh1236I | CGCG | 1 cut(s) | 672 |
| BshFI | GGCC | 1 cut(s) | 34 |
| BshNI | GGYRCC | 1 cut(s) | 1184 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 489, 742 |
| BsmAI | GTCTC | 2 cut(s) | 9, 804 |
| BsnI | GGCC | 1 cut(s) | 34 |
| Bsp119I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1288 |
| Bsp143I | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| Bsp19I | CCATGG | 2 cut(s) | 117, 906 |
| BspANI | GGCC | 1 cut(s) | 34 |
| BspCNI | CTCAG | 1 cut(s) | 1166 |
| BspFNI | CGCG | 1 cut(s) | 672 |
| BspHI | TCATGA | 2 cut(s) | 664, 1360 |
| BspLI | GGNNCC | 2 cut(s) | 189, 1186 |
| BspPI | GGATC | 1 cut(s) | 1001 |
| BspT104I | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BspT107I | GGYRCC | 1 cut(s) | 1184 |
| BsrDI | GCAATG | 2 cut(s) | 42, 382 |
| BsrI | ACTGG | 1 cut(s) | 963 |
| BssECI | CCNNGG | 4 cut(s) | 117, 906, 940, 1280 |
| BssMI | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| BssNAI | GTATAC | 1 cut(s) | 1333 |
| BssT1I | CCWWGG | 3 cut(s) | 117, 906, 1280 |
| Bst1107I | GTATAC | 1 cut(s) | 1333 |
| Bst4CI | ACNGT | 3 cut(s) | 563, 1355, 1372 |
| Bst6I | CTCTTC | 2 cut(s) | 159, 510 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1411 |
| BstBI | TTCGAA | 3 cut(s) | 616, 858, 951 |
| BstC8I | GCNNGC | 1 cut(s) | 1080 |
| BstDEI | CTNAG | 3 cut(s) | 359, 488, 1153 |
| BstDSI | CCRYGG | 3 cut(s) | 117, 906, 940 |
| BstF5I | GGATG | 4 cut(s) | 890, 997, 1261, 1330 |
| BstFNI | CGCG | 1 cut(s) | 672 |
| BstKTI | GATC | 5 cut(s) | 97, 328, 421, 555, 1009 |
| BstMAI | GTCTC | 2 cut(s) | 9, 804 |
| BstMBI | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1121, 1411 |
| BstNSI | RCATGY | 2 cut(s) | 1148, 1317 |
| BstSLI | GKGCMC | 1 cut(s) | 1288 |
| BstUI | CGCG | 1 cut(s) | 672 |
| BstV1I | GCAGC | 1 cut(s) | 619 |
| BstX2I | RGATCY | 1 cut(s) | 1006 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 87 |
| BstYI | RGATCY | 1 cut(s) | 1006 |
| BstZ17I | GTATAC | 1 cut(s) | 1333 |
| BsuI | GTATCC | 1 cut(s) | 486 |
| BsuRI | GGCC | 1 cut(s) | 34 |
| BtgI | CCRYGG | 3 cut(s) | 117, 906, 940 |
| BtrI | CACGTC | 2 cut(s) | 148, 784 |
| BtsCI | GGATG | 4 cut(s) | 890, 997, 1261, 1330 |
| BtsI | GCAGTG | 2 cut(s) | 900, 1286 |
| BtsIMutI | CAGTG | 3 cut(s) | 855, 900, 1286 |
| Cac8I | GCNNGC | 1 cut(s) | 1080 |
| CciI | TCATGA | 2 cut(s) | 664, 1360 |
| Cfr13I | GGNCC | 1 cut(s) | 187 |
| CseI | GACGC | 1 cut(s) | 1241 |
| Csp6I | GTAC | 3 cut(s) | 472, 853, 1356 |
| CviQI | GTAC | 3 cut(s) | 472, 853, 1356 |
| DdeI | CTNAG | 3 cut(s) | 359, 488, 1153 |
| DpnI | GATC | 5 cut(s) | 96, 327, 420, 554, 1008 |
| DpnII | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| EaeI | YGGCCR | 1 cut(s) | 32 |
| Eam1104I | CTCTTC | 2 cut(s) | 159, 510 |
| EarI | CTCTTC | 2 cut(s) | 159, 510 |
| Eco130I | CCWWGG | 3 cut(s) | 117, 906, 1280 |
| Eco32I | GATATC | 1 cut(s) | 888 |
| Eco47I | GGWCC | 1 cut(s) | 187 |
| Eco57I | CTGAAG | 4 cut(s) | 48, 530, 993, 1397 |
| EcoRV | GATATC | 1 cut(s) | 888 |
| EcoT14I | CCWWGG | 3 cut(s) | 117, 906, 1280 |
| ErhI | CCWWGG | 3 cut(s) | 117, 906, 1280 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 312, 344, 1062, 1094 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| FblI | GTMKAC | 1 cut(s) | 1332 |
| Fnu4HI | GCNGC | 1 cut(s) | 608 |
| FokI | GGATG | 4 cut(s) | 877, 1004, 1248, 1337 |
| Fsp4HI | GCNGC | 1 cut(s) | 608 |
| FspBI | CTAG | 5 cut(s) | 242, 512, 642, 722, 879 |
| GluI | GCNGC | 1 cut(s) | 608 |
| GsaI | CCCAGC | 1 cut(s) | 841 |
| GsuI | CTGGAG | 1 cut(s) | 980 |
| HaeIII | GGCC | 1 cut(s) | 34 |
| HgaI | GACGC | 1 cut(s) | 1241 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 1 cut(s) | 466 |
| HinfI | GANTC | 3 cut(s) | 674, 1104, 1253 |
| HphI | GGTGA | 3 cut(s) | 181, 287, 523 |
| Hpy166II | GTNNAC | 4 cut(s) | 127, 829, 853, 1333 |
| Hpy188I | TCNGA | 2 cut(s) | 152, 984 |
| Hpy188III | TCNNGA | 4 cut(s) | 456, 665, 694, 1361 |
| Hpy8I | GTNNAC | 4 cut(s) | 127, 829, 853, 1333 |
| HpyAV | CCTTC | 9 cut(s) | 72, 213, 404, 497, 538, 766, 1082, 1234, 1372 |
| HpyCH4III | ACNGT | 3 cut(s) | 563, 1355, 1372 |
| HpyCH4IV | ACGT | 4 cut(s) | 147, 238, 783, 794 |
| HpyCH4V | TGCA | 7 cut(s) | 375, 607, 704, 727, 1082, 1313, 1405 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1121, 1411 |
| HpyF3I | CTNAG | 3 cut(s) | 359, 488, 1153 |
| HpySE526I | ACGT | 4 cut(s) | 147, 238, 783, 794 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| LmnI | GCTCC | 1 cut(s) | 961 |
| LpnPI | CCDG | 6 cut(s) | 441, 616, 823, 944, 1029, 1129 |
| Lsp1109I | GCAGC | 1 cut(s) | 619 |
| LweI | GCATC | 5 cut(s) | 168, 443, 633, 920, 925 |
| MaeI | CTAG | 5 cut(s) | 242, 512, 642, 722, 879 |
| MaeII | ACGT | 4 cut(s) | 147, 238, 783, 794 |
| MaeIII | GTNAC | 5 cut(s) | 757, 898, 1147, 1229, 1349 |
| MalI | GATC | 5 cut(s) | 96, 327, 420, 554, 1008 |
| MboI | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MflI | RGATCY | 1 cut(s) | 1006 |
| MhlI | GDGCHC | 1 cut(s) | 1288 |
| MmeI | TCCRAC | 2 cut(s) | 175, 690 |
| MnlI | CCTC | 5 cut(s) | 160, 511, 873, 978, 1162 |
| MroXI | GAANNNNTTC | 2 cut(s) | 978, 1257 |
| MseI | TTAA | 8 cut(s) | 54, 132, 194, 429, 464, 566, 602, 1305 |
| MslI | CAYNNNNRTG | 1 cut(s) | 905 |
| MspA1I | CMGCKG | 1 cut(s) | 1157 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MvnI | CGCG | 1 cut(s) | 672 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1121, 1411 |
| NcoI | CCATGG | 2 cut(s) | 117, 906 |
| NdeII | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| NlaIV | GGNNCC | 2 cut(s) | 189, 1186 |
| NmuCI | GTSAC | 2 cut(s) | 898, 1229 |
| NspI | RCATGY | 2 cut(s) | 1148, 1317 |
| NspV | TTCGAA | 3 cut(s) | 616, 858, 951 |
| PagI | TCATGA | 2 cut(s) | 664, 1360 |
| PciI | ACATGT | 1 cut(s) | 1144 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 948 |
| PdmI | GAANNNNTTC | 2 cut(s) | 978, 1257 |
| PfeI | GAWTC | 3 cut(s) | 674, 1104, 1253 |
| PkrI | GCNGC | 1 cut(s) | 609 |
| PscI | ACATGT | 1 cut(s) | 1144 |
| PsiI | TTATAA | 1 cut(s) | 1038 |
| PspFI | CCCAGC | 1 cut(s) | 837 |
| PspN4I | GGNNCC | 2 cut(s) | 189, 1186 |
| PspPI | GGNCC | 1 cut(s) | 187 |
| PsuI | RGATCY | 1 cut(s) | 1006 |
| PvuII | CAGCTG | 1 cut(s) | 1157 |
| RsaI | GTAC | 3 cut(s) | 473, 854, 1357 |
| RsaNI | GTAC | 3 cut(s) | 472, 853, 1356 |
| RseI | CAYNNNNRTG | 1 cut(s) | 905 |
| SaqAI | TTAA | 8 cut(s) | 54, 132, 194, 429, 464, 566, 602, 1305 |
| SatI | GCNGC | 1 cut(s) | 608 |
| Sau3AI | GATC | 5 cut(s) | 94, 325, 418, 552, 1006 |
| Sau96I | GGNCC | 1 cut(s) | 187 |
| ScaI | AGTACT | 1 cut(s) | 1357 |
| SduI | GDGCHC | 1 cut(s) | 1288 |
| SfaNI | GCATC | 5 cut(s) | 168, 443, 633, 920, 925 |
| SfuI | TTCGAA | 3 cut(s) | 616, 858, 951 |
| SinI | GGWCC | 1 cut(s) | 187 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 905 |
| SmlI | CTYRAG | 2 cut(s) | 21, 137 |
| SmoI | CTYRAG | 2 cut(s) | 21, 137 |
| SspI | AATATT | 1 cut(s) | 869 |
| SspMI | CTAG | 5 cut(s) | 242, 512, 642, 722, 879 |
| StyI | CCWWGG | 3 cut(s) | 117, 906, 1280 |
| TaaI | ACNGT | 3 cut(s) | 563, 1355, 1372 |
| TaiI | ACGT | 4 cut(s) | 150, 241, 786, 797 |
| TaqI | TCGA | 7 cut(s) | 551, 616, 858, 951, 1102, 1209, 1297 |
| TatI | WGTACW | 2 cut(s) | 852, 1355 |
| TfiI | GAWTC | 3 cut(s) | 674, 1104, 1253 |
| Tru1I | TTAA | 8 cut(s) | 54, 132, 194, 429, 464, 566, 602, 1305 |
| Tru9I | TTAA | 8 cut(s) | 54, 132, 194, 429, 464, 566, 602, 1305 |
| TscAI | CASTG | 3 cut(s) | 855, 907, 1293 |
| TseFI | GTSAC | 2 cut(s) | 898, 1229 |
| TseI | GCWGC | 1 cut(s) | 607 |
| Tsp45I | GTSAC | 2 cut(s) | 898, 1229 |
| TspDTI | ATGAA | 6 cut(s) | 372, 681, 1040, 1143, 1187, 1250 |
| TspGWI | ACGGA | 1 cut(s) | 335 |
| TspRI | CASTG | 3 cut(s) | 855, 907, 1293 |
| VpaK11BI | GGWCC | 1 cut(s) | 187 |
| XapI | RAATTY | 3 cut(s) | 279, 291, 425 |
| XceI | RCATGY | 2 cut(s) | 1148, 1317 |
| XmiI | GTMKAC | 1 cut(s) | 1332 |
| XmnI | GAANNNNTTC | 2 cut(s) | 978, 1257 |
| XspI | CTAG | 5 cut(s) | 242, 512, 642, 722, 879 |
| ZrmI | AGTACT | 1 cut(s) | 1357 |