Rmu_sc0002915.1_g000015

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002915.1
OG0000053
Physical Location & Seq
Forward (+)
38700 .. 40996
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002915.1_g000015.1.cds

Sequence Viewer

Length: 1548 bp
atgtctctcaacggggtcaatatagcttctcaagcccctccaacactgaatgcctcgactgatgccgatagtcgacgttcggcaaatttccatcccagcatttggggagaccagtttctgtcttgtaacaacactatggaaactgacataaatggtgagcaacatgtccaacaactgaaggaagaagtgaagagagtgctaatggctccgccagttgaaacttgtttaggaaaattggagttgattgatgacattcaacgcttgggcgtgtcttaccaatttgaatacgagattgaccaaactatgcagcaaattcacgacaattttaatggtgactgtgatggtgatctgcacacttgtgctcttcgttttcgcttgttgaggcagcatggttacaatgtttcatgcgatatgttcaacaagttcgactacacatcgcttcacgatgatgtagtggggctacaaagcttgtatgaagccacacatcttagagtacgaggagatgattttctagaagaagcactaaccttcaccaccacacatctagtgtcggcagcgctagcaaaccgtttaagccccccgctttcgaaacaagtaatgcatgccttgaatcaaccactccggaagggcttaccgaggctagaagcgaggcattacatgtctctccaccaggaactacacggatcacgtaaccaaattttgctgagttttgcaaagctggatttcaacctgctccaacaagtgcatcagaaagaactaagtgatattgcaaggaggacactaaccaaagttattgccatgacgtccattatcgatgacatttatgatgtgtatggcacgcttgaagaactagacctctttactagagcaattgagaggtgggacatcttagccatggatgaactaccggagtatatgaaagtctgttacgaggcactgttagatgtctatgctgaaacagaacaggagcttgcaagcaagggacaattatatcgtatcaattacgcaaaagaagcggttagggcatacgatgctgaagcaaaatggtttcacaagaactacacaccaacaatggatgaatacatggaagtagcccttgtcacttcagcctactcaatgctagcaaccacatcatttgttggaatgggagatatcgttacaaaagactcctttgagtggatcttcagtgaccctaagattgtaaaggcttcagcagtagtttgcagactcatggatgacattgtatcccacaagttcgagcaaaagagaggacatgttgcctcggctgtggaatgttacatgaaacaatacggtgcgacagaagaagaaaccataattgaatttcgtaaacaagtgagtgatgcatggaaggacataaatgaagagtgcctccaccctacacctcttgacatgtccctcttaatgcgagttctgaatctcacacgcgtgatagatgtagtatacaagtctgaagatggctacactcacgctggaaccattctcaaagattttgtagcttctctacttatcgaacatgtgcctgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

515

Amino Acids

58.87

Weight (kDa)

5.06

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 806
Acc36I ACCTGC 1 cut(s) 738
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 2 cut(s) 73, 1461
AccII CGCG 1 cut(s) 1446
AccIII TCCGGA 1 cut(s) 621
AciI CCGC 3 cut(s) 209, 581, 1016
AclWI GGATC 2 cut(s) 691, 1187
AcsI RAATTY 4 cut(s) 85, 312, 696, 1340
AcuI CTGAAG 6 cut(s) 197, 1056, 1089, 1168, 1194, 1491
AcyI GRCGYC 1 cut(s) 803
AfaI GTAC 1 cut(s) 495
AfeI AGCGCT 1 cut(s) 558
AfiI CCNNNNNNNGG 2 cut(s) 102, 1176
AflIII ACRYGT 6 cut(s) 163, 657, 1273, 1410, 1444, 1534
AgsI TTSAA 8 cut(s) 218, 257, 284, 418, 610, 727, 845, 1340
AjnI CCWGG 1 cut(s) 669
AleI CACNNNNGTG 2 cut(s) 357, 1445
AluBI AGCT 5 cut(s) 26, 468, 718, 970, 1517
AluI AGCT 5 cut(s) 26, 468, 718, 970, 1517
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 3 cut(s) 9, 102, 666
AlwI GGATC 2 cut(s) 691, 1187
AlwNI CAGNNNCTG 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 621
Aor51HI AGCGCT 1 cut(s) 558
ApeKI GCWGC 3 cut(s) 307, 385, 554
ApoI RAATTY 4 cut(s) 85, 312, 696, 1340
AspLEI GCGC 1 cut(s) 559
AsuHPI GGTGA 4 cut(s) 167, 344, 356, 523
AsuII TTCGAA 1 cut(s) 587
AsuNHI GCTAGC 2 cut(s) 559, 1120
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 319, 397, 566
BccI CCATC 3 cut(s) 99, 335, 1469
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 1255
BcoDI GTCTC 3 cut(s) 9, 102, 666
BfaI CTAG 7 cut(s) 512, 545, 560, 641, 851, 864, 1121
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 738
BfuI GTATCC 1 cut(s) 1255
BisI GCNGC 3 cut(s) 308, 386, 555
BlsI GCNGC 3 cut(s) 309, 387, 556
Bme1390I CCNGG 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 207, 1495
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 4 cut(s) 52, 754, 1021, 1351
BmtI GCTAGC 2 cut(s) 563, 1124
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 635, 894, 1281
BsaWI WCCGGW 2 cut(s) 621, 907
BsaXI ACNNNNNCTCC 2 cut(s) 1140, 1170
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 1176
Bse1I ACTGG 2 cut(s) 112, 212
Bse8I GATNNNNATC 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 621
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 3 cut(s) 635, 894, 1281
BseGI GGATG 4 cut(s) 91, 904, 1081, 1240
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 102, 1176
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 2 cut(s) 112, 212
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 3 cut(s) 319, 397, 566
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 1446
BshVI ATCGAT 1 cut(s) 813
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 622, 908
BslFI GGGAC 3 cut(s) 896, 996, 1399
BslI CCNNNNNNNGG 2 cut(s) 102, 1176
BsmAI GTCTC 3 cut(s) 9, 102, 666
BsmFI GGGAC 3 cut(s) 896, 996, 1399
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 1 cut(s) 621
Bsp143I GATC 3 cut(s) 346, 683, 1179
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 209, 581, 1016
BspCNI CTCAG 1 cut(s) 696
BspDI ATCGAT 1 cut(s) 813
BspEI TCCGGA 1 cut(s) 621
BspFNI CGCG 1 cut(s) 1446
BspLI GGNNCC 2 cut(s) 207, 1495
BspMI ACCTGC 1 cut(s) 738
BspOI GCTAGC 2 cut(s) 563, 1124
BspPI GGATC 2 cut(s) 691, 1187
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 2 cut(s) 112, 212
BssECI CCNNGG 3 cut(s) 635, 894, 1281
BssMI GATC 3 cut(s) 346, 683, 1179
BssNAI GTATAC 1 cut(s) 1462
BssNI GRCGYC 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 1462
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 4 cut(s) 338, 569, 939, 1313
Bst6I CTCTTC 3 cut(s) 185, 369, 1377
BstACI GRCGYC 1 cut(s) 803
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 6 cut(s) 561, 603, 839, 972, 976, 1122
BstDEI CTNAG 5 cut(s) 488, 704, 758, 889, 1194
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 4 cut(s) 91, 904, 1081, 1240
BstFNI CGCG 1 cut(s) 1446
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 1 cut(s) 559
BstKTI GATC 3 cut(s) 349, 686, 1182
BstMAI GTCTC 3 cut(s) 9, 102, 666
BstMBI GATC 3 cut(s) 346, 683, 1179
BstMWI GCNNNNNNNGC 5 cut(s) 32, 560, 1013, 1022, 1031
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 6 cut(s) 167, 605, 661, 1277, 1414, 1538
BstSCI CCNGG 1 cut(s) 669
BstUI CGCG 1 cut(s) 1446
BstV1I GCAGC 3 cut(s) 319, 397, 566
BstX2I RGATCY 1 cut(s) 1179
BstYI RGATCY 1 cut(s) 1179
BstZ17I GTATAC 1 cut(s) 1462
Bsu15I ATCGAT 1 cut(s) 813
BsuI GTATCC 1 cut(s) 1255
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 894
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 4 cut(s) 91, 904, 1081, 1240
BtsIMutI CAGTG 3 cut(s) 44, 935, 1192
BveI ACCTGC 1 cut(s) 738
Cac8I GCNNGC 6 cut(s) 561, 603, 839, 972, 976, 1122
CaiI CAGNNNCTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 559
ClaI ATCGAT 1 cut(s) 813
Csp6I GTAC 1 cut(s) 494
CspCI CAANNNNNGTGG 2 cut(s) 1117, 1152
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 5 cut(s) 488, 704, 758, 889, 1194
DpnI GATC 3 cut(s) 348, 685, 1181
DpnII GATC 3 cut(s) 346, 683, 1179
Eam1104I CTCTTC 3 cut(s) 185, 369, 1377
EarI CTCTTC 3 cut(s) 185, 369, 1377
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 1153
Eco47III AGCGCT 1 cut(s) 558
Eco57I CTGAAG 6 cut(s) 197, 1056, 1089, 1168, 1194, 1491
EcoRII CCWGG 1 cut(s) 669
EcoRV GATATC 1 cut(s) 1153
EcoT14I CCWWGG 1 cut(s) 894
EcoT22I ATGCAT 2 cut(s) 603, 1366
ErhI CCWWGG 1 cut(s) 894
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 3 cut(s) 896, 996, 1399
FauI CCCGC 1 cut(s) 588
FblI GTMKAC 2 cut(s) 73, 1461
Fnu4HI GCNGC 3 cut(s) 308, 386, 555
FokI GGATG 4 cut(s) 78, 911, 1088, 1247
Fsp4HI GCNGC 3 cut(s) 308, 386, 555
FspBI CTAG 7 cut(s) 512, 545, 560, 641, 851, 864, 1121
GlaI GCGC 1 cut(s) 558
GluI GCNGC 3 cut(s) 308, 386, 555
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 560
HapII CCGG 2 cut(s) 622, 908
HhaI GCGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 803
Hin6I GCGC 1 cut(s) 557
HinP1I GCGC 1 cut(s) 557
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 4 cut(s) 610, 1166, 1227, 1435
HpaII CCGG 2 cut(s) 622, 908
HphI GGTGA 4 cut(s) 167, 344, 356, 523
Hpy166II GTNNAC 3 cut(s) 74, 1349, 1462
Hpy188I TCNGA 3 cut(s) 750, 1434, 1471
Hpy188III TCNNGA 5 cut(s) 317, 443, 512, 622, 1406
Hpy8I GTNNAC 3 cut(s) 74, 1349, 1462
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 172, 538, 619, 1363
HpyCH4III ACNGT 4 cut(s) 338, 569, 939, 1313
HpyCH4IV ACGT 3 cut(s) 76, 688, 803
HpyCH4V TGCA 9 cut(s) 307, 352, 601, 713, 745, 770, 974, 1224, 1364
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 560, 1013, 1022, 1031
HpyF3I CTNAG 5 cut(s) 488, 704, 758, 889, 1194
HpySE526I ACGT 3 cut(s) 76, 688, 803
Hsp92I GRCGYC 1 cut(s) 803
HspAI GCGC 1 cut(s) 557
Kpn2I TCCGGA 1 cut(s) 621
Kzo9I GATC 3 cut(s) 346, 683, 1179
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 3 cut(s) 211, 738, 967
Lsp1109I GCAGC 3 cut(s) 319, 397, 566
LweI GCATC 4 cut(s) 52, 754, 1021, 1351
MaeI CTAG 7 cut(s) 512, 545, 560, 641, 851, 864, 1121
MaeII ACGT 3 cut(s) 76, 688, 803
MaeIII GTNAC 9 cut(s) 125, 332, 392, 689, 926, 1099, 1156, 1187, 1295
MalI GATC 3 cut(s) 348, 685, 1181
MboI GATC 3 cut(s) 346, 683, 1179
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 1 cut(s) 1179
MhlI GDGCHC 1 cut(s) 364
MluI ACGCGT 1 cut(s) 1444
MlyI GAGTC 2 cut(s) 1160, 1221
MmeI TCCRAC 4 cut(s) 65, 193, 760, 1120
Mph1103I ATGCAT 2 cut(s) 603, 1366
MroI TCCGGA 1 cut(s) 621
MseI TTAA 3 cut(s) 327, 572, 1421
MslI CAYNNNNRTG 3 cut(s) 357, 447, 1445
MspI CCGG 2 cut(s) 622, 908
MspR9I CCNGG 1 cut(s) 671
MunI CAATTG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 1446
MwoI GCNNNNNNNGC 5 cut(s) 32, 560, 1013, 1022, 1031
NcoI CCATGG 1 cut(s) 894
NdeII GATC 3 cut(s) 346, 683, 1179
NheI GCTAGC 2 cut(s) 559, 1120
NlaIV GGNNCC 2 cut(s) 207, 1495
NmeAIII GCCGAG 1 cut(s) 1262
NmuCI GTSAC 3 cut(s) 332, 1099, 1187
NsiI ATGCAT 2 cut(s) 603, 1366
NspI RCATGY 6 cut(s) 167, 605, 661, 1277, 1414, 1538
NspV TTCGAA 1 cut(s) 587
OliI CACNNNNGTG 2 cut(s) 357, 1445
PaeI GCATGC 1 cut(s) 605
PciI ACATGT 5 cut(s) 163, 657, 1273, 1410, 1534
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 610, 1435
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 3 cut(s) 309, 387, 556
PleI GAGTC 2 cut(s) 1160, 1221
PpsI GAGTC 2 cut(s) 1160, 1221
Ppu21I YACGTR 1 cut(s) 689
PscI ACATGT 5 cut(s) 163, 657, 1273, 1410, 1534
Psp6I CCWGG 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 207, 1495
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 1179
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 3 cut(s) 357, 447, 1445
SalI GTCGAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 327, 572, 1421
SatI GCNGC 3 cut(s) 308, 386, 555
Sau3AI GATC 3 cut(s) 346, 683, 1179
SchI GAGTC 2 cut(s) 1160, 1221
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 4 cut(s) 52, 754, 1021, 1351
SfuI TTCGAA 1 cut(s) 587
SmiMI CAYNNNNRTG 3 cut(s) 357, 447, 1445
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SphI GCATGC 1 cut(s) 605
SsiI CCGC 3 cut(s) 209, 581, 1016
SspMI CTAG 7 cut(s) 512, 545, 560, 641, 851, 864, 1121
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 894
TaaI ACNGT 4 cut(s) 338, 569, 939, 1313
TaiI ACGT 3 cut(s) 79, 691, 806
TaqI TCGA 7 cut(s) 56, 73, 426, 587, 813, 1257, 1530
TfiI GAWTC 2 cut(s) 610, 1435
Tru1I TTAA 3 cut(s) 327, 572, 1421
Tru9I TTAA 3 cut(s) 327, 572, 1421
TscAI CASTG 3 cut(s) 51, 942, 1192
TseFI GTSAC 3 cut(s) 332, 1099, 1187
TseI GCWGC 3 cut(s) 307, 385, 554
Tsp45I GTSAC 3 cut(s) 332, 1099, 1187
TspDTI ATGAA 7 cut(s) 393, 489, 915, 932, 1092, 1316, 1395
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 3 cut(s) 51, 942, 1192
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 4 cut(s) 85, 312, 696, 1340
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 6 cut(s) 167, 605, 661, 1277, 1414, 1538
XmiI GTMKAC 2 cut(s) 73, 1461
XspI CTAG 7 cut(s) 512, 545, 560, 641, 851, 864, 1121
ZraI GACGTC 1 cut(s) 804
Zsp2I ATGCAT 2 cut(s) 603, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.