Rh5CG285300

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000053
Physical Location & Seq
Forward (+)
31315183 .. 31318537
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG285300.1

Sequence Viewer

Length: 1422 bp
ATGCCTGCTCAAATACTAGAATCTGAAGCTCCAACACAAAATGCCACTCCTGAGGTTAATCGACGTTCAGCTAATTTTTCTCCTAGCATTTGGGGCGATCAGTTTCTCTCATATGCTTCTAATAAGGAAAGCAATATTGAAACTGAGCAACATCTCCGAGAATTCAAGGCAGAAGTGAAGACGATGCTGAAGGCTCCGGTTGAAAAGCTTTCACAAAAGTTGGATTTGATTGATAACATTCTGCGCTTAGGAGTTTTCCGCCATTTTGAAAATGAGATCCACAAAATTTTACAGCAAATTCACAACAATTCTTATGTCAACTGTGACGACCTGGAGACCGATGATGAGCTCTACACTGTGGCGCTCCGTTTTCGATTACTAAGACAACATGGTTATAAAGTTTCATGCAACGTGTTTAGGAAGTTCATGGACGATGATGGAAACTTTAAGGAATCACTTATTGAAGATGTCCCGGGACTATTAAGTTTGTATGAAGCCACACATCTTAGGACACACGGGGAAGAACTGCTTGATGATGCATTGACCTTCACCTCCACTCATCTTGAGTCGGCAACTCGCCATAGTTTAAACCCCCTGGTTATGAAGCAAGTAACTCATGCCTTGTATCAGCCTCTCTGGAAGGGTGTAACTAGACTCGAAGCCAGATATCACTTGTCTGCTTACCCGGATCACAATTCACATAATGAAACACTCTTGAATTTTGCAAAGTTGGATTTCAATCTACTGCAGCAAGTCCATCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGACTTGGACTTTGCAAACAAGCTGCCGTTTGCAAGAGACAGAGTGGTTGAGTGTTACTTCTGGACTTTGGGAGTCTACTTTGAGCCCCAATATCACTTTGGTAGGACAACATTTTGCAAAGTTATTGCCATGACATCCATTATTGACGACATTTATGACGTGTATGGCACGCTTGATGAGGCAGAACTTTTTACTGAAGCTATTGAGAGATGGGACATCTCTGCCATGGATATACTGCCCGGGTATATGAGAATCTGTTACCAAGCACTGTTGGATGTCTATCGTGAAATGGAAGAAAAGCTTGCAATTGAGGGCAACTTATATGCCATCCACTACGCGAGAGAATCAATGAAAATCCAGGTTAGAGCTTACTTCCGAGAAGCCAAATGGTTCCACCAGAAATACACGCCAACCTTGGATGAATATATGTCATTAGCACTTGTTACATCTGGATACTTTATGCTAGCAACAATATCCTTTCTGGGAATGGGGGATATTGTCACAAGAGACTCCTTTGAGTGGTTGTTCAATAGTCCTAAAATTGTCAAGGCTTCAGAGTTAGTTGGCAGACTCATGGATGACATGGCTTCTCATAAGGTACCTGTACTTAACTATAGTACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

473

Amino Acids

55.24

Weight (kDa)

5.42

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 30 - 208 8.6e-58 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 265 - 464 6.2e-85 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 305 - 464 3.1e-45 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 1393
AccB1I GGYRCC 1 cut(s) 1393
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 1133
AciI CCGC 1 cut(s) 259
AclWI GGATC 2 cut(s) 271, 696
AcsI RAATTY 4 cut(s) 161, 285, 297, 718
AcuI CTGAAG 4 cut(s) 45, 209, 1011, 1332
AfaI GTAC 3 cut(s) 1395, 1401, 1414
AfiI CCNNNNNNNGG 1 cut(s) 1314
AflIII ACRYGT 2 cut(s) 411, 954
AgsI TTSAA 8 cut(s) 140, 166, 203, 269, 464, 718, 739, 1324
AjiI CACGTC 1 cut(s) 955
AjnI CCWGG 3 cut(s) 330, 594, 1152
AluBI AGCT 8 cut(s) 29, 71, 208, 349, 817, 995, 1096, 1163
AluI AGCT 8 cut(s) 29, 71, 208, 349, 817, 995, 1096, 1163
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 3 cut(s) 329, 825, 1296
AlwI GGATC 2 cut(s) 271, 696
Ama87I CYCGRG 2 cut(s) 472, 1034
ApeKI GCWGC 2 cut(s) 748, 817
ApoI RAATTY 4 cut(s) 161, 285, 297, 718
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
Asp718I GGTACC 1 cut(s) 1393
AspLEI GCGC 2 cut(s) 246, 364
AsuC2I CCSGG 5 cut(s) 473, 474, 686, 1035, 1036
AsuHPI GGTGA 1 cut(s) 541
AsuNHI GCTAGC 1 cut(s) 1258
AvaI CYCGRG 2 cut(s) 472, 1034
AxyI CCTNAGG 1 cut(s) 51
BaeI ACNNNNGTAYC 1 cut(s) 1396
BanI GGYRCC 1 cut(s) 1393
BanII GRGCYC 2 cut(s) 351, 882
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 760, 804
BccI CCATC 4 cut(s) 431, 765, 999, 1130
BceAI ACGGC 1 cut(s) 805
BciT130I CCWGG 3 cut(s) 332, 596, 1154
BciVI GTATCC 1 cut(s) 1241
BcnI CCSGG 5 cut(s) 473, 474, 686, 1035, 1036
BcoDI GTCTC 3 cut(s) 329, 825, 1296
BfaI CTAG 4 cut(s) 17, 84, 651, 1259
BfmI CTRYAG 2 cut(s) 746, 1408
BfoI RGCGCY 1 cut(s) 365
BfuI GTATCC 1 cut(s) 1241
BisI GCNGC 2 cut(s) 749, 818
BlsI GCNGC 2 cut(s) 750, 819
Bme1390I CCNGG 8 cut(s) 332, 473, 474, 596, 686, 1035, 1036, 1154
BmeT110I CYCGRG 2 cut(s) 472, 1034
BmgBI CACGTC 1 cut(s) 955
BmiI GGNNCC 3 cut(s) 195, 1187, 1395
BmrFI CCNGG 8 cut(s) 332, 473, 474, 596, 686, 1035, 1036, 1154
BmsI GCATC 2 cut(s) 174, 526
BmtI GCTAGC 1 cut(s) 1262
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 5 cut(s) 473, 474, 686, 1035, 1036
BsaBI GATNNNNATC 2 cut(s) 738, 1074
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 5 cut(s) 472, 594, 1020, 1034, 1209
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 1314
Bse21I CCTNAGG 1 cut(s) 51
Bse8I GATNNNNATC 2 cut(s) 738, 1074
BseBI CCWGG 3 cut(s) 332, 596, 1154
BseDI CCNNGG 5 cut(s) 472, 594, 1020, 1034, 1209
BseGI GGATG 5 cut(s) 929, 1075, 1122, 1219, 1378
BseJI GATNNNNATC 2 cut(s) 738, 1074
BseLI CCNNNNNNNGG 1 cut(s) 1314
BseMII CTCAG 2 cut(s) 42, 135
BseXI GCAGC 2 cut(s) 760, 804
Bsh1236I CGCG 1 cut(s) 1133
BshNI GGYRCC 1 cut(s) 1393
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 2 cut(s) 472, 1034
BsiSI CCGG 4 cut(s) 197, 473, 686, 1035
BslFI GGGAC 3 cut(s) 455, 489, 1022
BslI CCNNNNNNNGG 1 cut(s) 1314
BsmAI GTCTC 3 cut(s) 329, 825, 1296
BsmFI GGGAC 3 cut(s) 455, 489, 1022
Bso31I GGTCTC 1 cut(s) 329
BsoBI CYCGRG 2 cut(s) 472, 1034
Bsp1286I GDGCHC 2 cut(s) 351, 882
Bsp143I GATC 3 cut(s) 97, 276, 688
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 43, 136
BspFNI CGCG 1 cut(s) 1133
BspLI GGNNCC 3 cut(s) 195, 1187, 1395
BspMAI CTGCAG 1 cut(s) 750
BspOI GCTAGC 1 cut(s) 1262
BspPI GGATC 2 cut(s) 271, 696
BspT107I GGYRCC 1 cut(s) 1393
BspTNI GGTCTC 1 cut(s) 329
BssECI CCNNGG 5 cut(s) 472, 594, 1020, 1034, 1209
BssMI GATC 3 cut(s) 97, 276, 688
BssT1I CCWWGG 2 cut(s) 1020, 1209
Bst2UI CCWGG 3 cut(s) 332, 596, 1154
Bst4CI ACNGT 3 cut(s) 323, 358, 1065
BstC8I GCNNGC 4 cut(s) 6, 965, 1098, 1260
BstDEI CTNAG 6 cut(s) 51, 144, 247, 380, 506, 770
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 5 cut(s) 929, 1075, 1122, 1219, 1378
BstFNI CGCG 1 cut(s) 1133
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 246, 364
BstKTI GATC 3 cut(s) 100, 279, 691
BstMAI GTCTC 3 cut(s) 329, 825, 1296
BstMBI GATC 3 cut(s) 97, 276, 688
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 3 cut(s) 332, 596, 1154
BstSCI CCNGG 8 cut(s) 330, 471, 472, 594, 684, 1033, 1034, 1152
BstSFI CTRYAG 2 cut(s) 746, 1408
BstUI CGCG 1 cut(s) 1133
BstV1I GCAGC 2 cut(s) 760, 804
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 51
BsuI GTATCC 1 cut(s) 1241
BtgI CCRYGG 1 cut(s) 1020
BtrI CACGTC 1 cut(s) 955
BtsCI GGATG 5 cut(s) 929, 1075, 1122, 1219, 1378
BtsIMutI CAGTG 2 cut(s) 354, 1061
Cac8I GCNNGC 4 cut(s) 6, 965, 1098, 1260
CfoI GCGC 2 cut(s) 246, 364
Cfr9I CCCGGG 2 cut(s) 472, 1034
Csp6I GTAC 3 cut(s) 1394, 1400, 1413
CspCI CAANNNNNGTGG 2 cut(s) 544, 579
CviAII CATG 8 cut(s) 389, 405, 427, 617, 925, 1021, 1369, 1378
CviQI GTAC 3 cut(s) 1394, 1400, 1413
DdeI CTNAG 6 cut(s) 51, 144, 247, 380, 506, 770
DpnI GATC 3 cut(s) 99, 278, 690
DpnII GATC 3 cut(s) 97, 276, 688
DraI TTTAAA 1 cut(s) 588
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 1020, 1209
Eco24I GRGCYC 2 cut(s) 351, 882
Eco31I GGTCTC 1 cut(s) 329
Eco32I GATATC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 4 cut(s) 45, 209, 1011, 1332
Eco81I CCTNAGG 1 cut(s) 51
Eco88I CYCGRG 2 cut(s) 472, 1034
EcoICRI GAGCTC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 330, 594, 1152
EcoRV GATATC 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 1020, 1209
EcoT22I ATGCAT 1 cut(s) 541
EcoT38I GRGCYC 2 cut(s) 351, 882
ErhI CCWWGG 2 cut(s) 1020, 1209
FaeI CATG 8 cut(s) 392, 408, 430, 620, 928, 1024, 1372, 1381
FalI AAGNNNNNCTT 4 cut(s) 513, 545, 1080, 1112
FaqI GGGAC 3 cut(s) 455, 489, 1022
FatI CATG 8 cut(s) 388, 404, 426, 616, 924, 1020, 1368, 1377
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 2 cut(s) 749, 818
FokI GGATG 5 cut(s) 916, 1082, 1109, 1226, 1385
FriOI GRGCYC 2 cut(s) 351, 882
Fsp4HI GCNGC 2 cut(s) 749, 818
FspBI CTAG 4 cut(s) 17, 84, 651, 1259
GlaI GCGC 2 cut(s) 245, 363
GluI GCNGC 2 cut(s) 749, 818
GsuI CTGGAG 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 365
HapII CCGG 4 cut(s) 197, 473, 686, 1035
HhaI GCGC 2 cut(s) 246, 364
Hin1II CATG 8 cut(s) 392, 408, 430, 620, 928, 1024, 1372, 1381
Hin6I GCGC 2 cut(s) 244, 362
HinP1I GCGC 2 cut(s) 244, 362
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 206, 1094
HinfI GANTC 9 cut(s) 20, 452, 566, 654, 867, 1047, 1139, 1304, 1365
HpaII CCGG 4 cut(s) 197, 473, 686, 1035
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 319, 871
Hpy188I TCNGA 5 cut(s) 25, 158, 762, 1172, 1351
Hpy188III TCNNGA 7 cut(s) 50, 563, 637, 715, 856, 1079, 1245
Hpy8I GTNNAC 2 cut(s) 319, 871
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 4 cut(s) 184, 556, 634, 787
HpyCH4III ACNGT 3 cut(s) 323, 358, 1065
HpyCH4IV ACGT 3 cut(s) 64, 411, 954
HpyCH4V TGCA 9 cut(s) 408, 539, 725, 748, 782, 809, 827, 912, 1100
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 6 cut(s) 51, 144, 247, 380, 506, 770
HpySE526I ACGT 3 cut(s) 64, 411, 954
Hsp92II CATG 8 cut(s) 392, 408, 430, 620, 928, 1024, 1372, 1381
HspAI GCGC 2 cut(s) 244, 362
KpnI GGTACC 1 cut(s) 1397
Kzo9I GATC 3 cut(s) 97, 276, 688
LmnI GCTCC 3 cut(s) 34, 199, 369
Lsp1109I GCAGC 2 cut(s) 760, 804
LweI GCATC 2 cut(s) 174, 526
MaeI CTAG 4 cut(s) 17, 84, 651, 1259
MaeII ACGT 3 cut(s) 64, 411, 954
MaeIII GTNAC 7 cut(s) 323, 610, 646, 848, 1052, 1237, 1294
MalI GATC 3 cut(s) 99, 278, 690
MboI GATC 3 cut(s) 97, 276, 688
MboII GAAGA 4 cut(s) 190, 476, 533, 1100
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 351, 882
MluCI AATT 9 cut(s) 73, 161, 285, 297, 307, 694, 718, 1101, 1335
MlyI GAGTC 5 cut(s) 575, 648, 876, 1298, 1359
MmeI TCCRAC 4 cut(s) 56, 201, 711, 1047
MnlI CCTC 5 cut(s) 46, 562, 642, 967, 1099
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 5 cut(s) 57, 447, 482, 587, 1404
MspI CCGG 4 cut(s) 197, 473, 686, 1035
MspR9I CCNGG 8 cut(s) 332, 473, 474, 596, 686, 1035, 1036, 1154
MssI GTTTAAAC 1 cut(s) 588
MunI CAATTG 1 cut(s) 1101
MvaI CCWGG 3 cut(s) 332, 596, 1154
MvnI CGCG 1 cut(s) 1133
MwoI GCNNNNNNNGC 1 cut(s) 93
NciI CCSGG 5 cut(s) 473, 474, 686, 1035, 1036
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 112
NdeII GATC 3 cut(s) 97, 276, 688
NheI GCTAGC 1 cut(s) 1258
NlaIII CATG 8 cut(s) 392, 408, 430, 620, 928, 1024, 1372, 1381
NlaIV GGNNCC 3 cut(s) 195, 1187, 1395
NmuCI GTSAC 2 cut(s) 323, 1294
NsiI ATGCAT 1 cut(s) 541
PfeI GAWTC 4 cut(s) 20, 452, 1047, 1139
PkrI GCNGC 2 cut(s) 750, 819
PleI GAGTC 5 cut(s) 574, 648, 875, 1298, 1359
PmeI GTTTAAAC 1 cut(s) 588
PpsI GAGTC 5 cut(s) 574, 648, 875, 1298, 1359
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 330, 594, 1152
PspGI CCWGG 3 cut(s) 330, 594, 1152
PspN4I GGNNCC 3 cut(s) 195, 1187, 1395
PstI CTGCAG 1 cut(s) 750
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 3 cut(s) 1395, 1401, 1414
RsaNI GTAC 3 cut(s) 1394, 1400, 1413
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 5 cut(s) 57, 447, 482, 587, 1404
SatI GCNGC 2 cut(s) 749, 818
Sau3AI GATC 3 cut(s) 97, 276, 688
SchI GAGTC 5 cut(s) 575, 648, 876, 1298, 1359
ScrFI CCNGG 8 cut(s) 332, 473, 474, 596, 686, 1035, 1036, 1154
SduI GDGCHC 2 cut(s) 351, 882
SfaNI GCATC 2 cut(s) 174, 526
SfcI CTRYAG 2 cut(s) 746, 1408
SmaI CCCGGG 2 cut(s) 474, 1036
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 9 cut(s) 73, 161, 285, 297, 307, 694, 718, 1101, 1335
SsiI CCGC 1 cut(s) 259
SspI AATATT 1 cut(s) 136
SspMI CTAG 4 cut(s) 17, 84, 651, 1259
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 8 cut(s) 330, 471, 472, 594, 684, 1033, 1034, 1152
StyI CCWWGG 2 cut(s) 1020, 1209
TaaI ACNGT 3 cut(s) 323, 358, 1065
TaiI ACGT 3 cut(s) 67, 414, 957
TaqI TCGA 3 cut(s) 61, 373, 657
TaqII GACCGA 1 cut(s) 353
TasI AATT 9 cut(s) 73, 161, 285, 297, 307, 694, 718, 1101, 1335
TatI WGTACW 1 cut(s) 1399
TfiI GAWTC 4 cut(s) 20, 452, 1047, 1139
Tru1I TTAA 5 cut(s) 57, 447, 482, 587, 1404
Tru9I TTAA 5 cut(s) 57, 447, 482, 587, 1404
TscAI CASTG 2 cut(s) 361, 1068
TseFI GTSAC 2 cut(s) 323, 1294
TseI GCWGC 2 cut(s) 748, 817
Tsp45I GTSAC 2 cut(s) 323, 1294
TspDTI ATGAA 7 cut(s) 393, 415, 507, 617, 720, 1160, 1230
TspGWI ACGGA 1 cut(s) 356
TspMI CCCGGG 2 cut(s) 472, 1034
TspRI CASTG 2 cut(s) 361, 1068
XapI RAATTY 4 cut(s) 161, 285, 297, 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 890
XmaI CCCGGG 2 cut(s) 472, 1034
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 4 cut(s) 17, 84, 651, 1259
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.