RchiOBHm_Chr1g0326011

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000053
Physical Location & Seq
Forward (+)
14194270 .. 14196689
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55566

Sequence Viewer

Length: 1239 bp
ATGGATCAGGCACGAACAGCAAATGCCAGTAGCACTCTTGATGTTGATCGACGTTCAGCTAATTTTTCTCCCAGCATTTGGGGCGAGTATTTTCTGTCATATGCATCGATGGAAACTGCAGATATTGAATCCAACCAAAGTATCCAAGAACTGAAGGAAGAAGTGAAGAGGATGCTAGTGAGTTCTTTGTCTTTACAAAGATTACACTTGATTGATTACATTCAGCGCTTGGGGTTGTCCTACAATTTTGAGGATGAGATTTACCAACTTTTACATCAAATTTACAACCGGACCTATTCTTCTTATGATGATGATGATGATGATGACGACGGCGACCTTCACACAGTTGCTCTCCGATTTCGGCTGCTTAGGCAACAAGGTTTTAAGGTTTCATGCAACATGTTCAACAAGTTCATCGATGTTGATGAGAAATTTAAGGAATCATGCGTTGCTGATGTAGTAGGATTGCTAAGTTTGTACGAAGCGACACATCTAAGGACACATGGAGATGATATATTAGATCGAGCACGGTACTTCACCACCACTCATCTTGAGTTTGCAGTGGCAGAACACGGCCGTTTAAGCCCCCCGCTTTCAAAACAAGTAGCTCATGCCTTATATCAACCACTCTGGAAGGGAAACCCAAGGATTGAAGCGAGGCATTACCTCTCTAGCTACCGGGAACTAAATACTTCACATTTTAGCGAAAGTCTTTTGACTTTTGCGAAGTTGGATTTCAATCAATTGCAGCAAATCCATCAAAAAGAACTAAGTCACATCACAAGGTGGTGGAAGGAGTTGGACTTTGTCAACAAACTACCTTTTACAAGGGACAGAATAGTAGAGTGTTACTTTTGGTCTTTGGGAGTCTACTTTGAGCCCAAGTATCATTTTGGGAGGACAACATTATGCAAAGTTCTTGGCTTACTAACCATGATTGATGACACTTACGATATGTACGGCACACCTGAAGAACTAGAGCTCTTTACTGAAGCTATTGAGAGGTGGGATATCTCTGCCATGGATTCATTGCCTGACTATATGAAAGTTTGCTATGGGGCATTGTTGAATGTCTACACTGAAATTAAAGATGAGCTTGCAAAGGAGGGAAACTCGTATCGCATCAACTATGCAATAGAAGCAGTAAGCCTCATAAGGTCTCAGCGAGAGCTGACTGATTTAGTGTTTTATGGTTTATGGGAGCCATGTGGGCAAGTAAATATACTAGTGAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

412

Amino Acids

48.26

Weight (kDa)

5.06

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 26 - 206 5.4e-57 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 265 - 382 1.2e-48 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 305 - 381 8.6e-16 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AccI GTMKAC 2 cut(s) 870, 1074
AciI CCGC 1 cut(s) 590
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 2 cut(s) 279, 431
AcuI CTGAAG 3 cut(s) 173, 990, 1011
AdeI CACNNNGTG 1 cut(s) 786
AfaI GTAC 3 cut(s) 479, 533, 959
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 6 cut(s) 128, 406, 597, 653, 739, 1069
AhlI ACTAGT 1 cut(s) 1225
AluBI AGCT 7 cut(s) 59, 608, 675, 982, 995, 1096, 1171
AluI AGCT 7 cut(s) 59, 608, 675, 982, 995, 1096, 1171
Alw21I GWGCWC 2 cut(s) 529, 984
Alw26I GTCTC 1 cut(s) 1164
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 364, 748
ApoI RAATTY 2 cut(s) 279, 431
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 124, 157
BanII GRGCYC 2 cut(s) 882, 984
Bbv12I GWGCWC 2 cut(s) 529, 984
BbvI GCAGC 2 cut(s) 351, 760
BccI CCATC 2 cut(s) 103, 765
BceAI ACGGC 4 cut(s) 346, 561, 589, 976
BciVI GTATCC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 1164
BcuI ACTAGT 1 cut(s) 1225
BfaI CTAG 4 cut(s) 176, 672, 977, 1226
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 1210
BisI GCNGC 2 cut(s) 365, 749
BlsI GCNGC 2 cut(s) 366, 750
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 1203
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 113, 162, 1131
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
Bpu10I CCTNAGC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 680
Bsa29I ATCGAT 2 cut(s) 107, 417
BsaBI GATNNNNATC 2 cut(s) 45, 738
BsaI GGTCTC 1 cut(s) 1164
BsaJI CCNNGG 2 cut(s) 644, 1020
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 1028
Bse8I GATNNNNATC 2 cut(s) 45, 738
BseCI ATCGAT 2 cut(s) 107, 417
BseDI CCNNGG 2 cut(s) 644, 1020
BseGI GGATG 2 cut(s) 177, 259
BseJI GATNNNNATC 2 cut(s) 45, 738
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 1028
BseMII CTCAG 1 cut(s) 1175
BseNI ACTGG 1 cut(s) 27
BseX3I CGGCCG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 351, 760
BseYI CCCAGC 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 1 cut(s) 576
BshVI ATCGAT 2 cut(s) 107, 417
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 529, 984
BsiSI CCGG 2 cut(s) 289, 679
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 1164
BsmFI GGGAC 1 cut(s) 845
BsnI GGCC 1 cut(s) 576
Bso31I GGTCTC 1 cut(s) 1164
Bsp1286I GDGCHC 3 cut(s) 529, 882, 984
Bsp143I GATC 3 cut(s) 4, 46, 520
Bsp19I CCATGG 1 cut(s) 1020
BspACI CCGC 1 cut(s) 590
BspANI GGCC 1 cut(s) 576
BspCNI CTCAG 1 cut(s) 1174
BspDI ATCGAT 2 cut(s) 107, 417
BspLI GGNNCC 1 cut(s) 1203
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 1164
BsrDI GCAATG 1 cut(s) 1028
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 644, 1020
BssMI GATC 3 cut(s) 4, 46, 520
BssT1I CCWWGG 2 cut(s) 644, 1020
Bst4CI ACNGT 2 cut(s) 346, 531
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 1098
BstDEI CTNAG 5 cut(s) 368, 470, 494, 770, 1161
BstDSI CCRYGG 1 cut(s) 1020
BstF5I GGATG 2 cut(s) 177, 259
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 3 cut(s) 7, 49, 523
BstMAI GTCTC 1 cut(s) 1164
BstMBI GATC 3 cut(s) 4, 46, 520
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 6 cut(s) 17, 81, 370, 582, 1139, 1210
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 678
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 351, 760
BstZI CGGCCG 1 cut(s) 574
Bsu15I ATCGAT 2 cut(s) 107, 417
BsuI GTATCC 1 cut(s) 152
BsuRI GGCC 1 cut(s) 576
BsuTUI ATCGAT 2 cut(s) 107, 417
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 2 cut(s) 177, 259
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 567, 1077
Cac8I GCNNGC 1 cut(s) 1098
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 291
ClaI ATCGAT 2 cut(s) 107, 417
Csp6I GTAC 3 cut(s) 478, 532, 958
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 8 cut(s) 393, 400, 444, 503, 611, 934, 1021, 1206
CviQI GTAC 3 cut(s) 478, 532, 958
DdeI CTNAG 5 cut(s) 368, 470, 494, 770, 1161
DpnI GATC 3 cut(s) 6, 48, 522
DpnII GATC 3 cut(s) 4, 46, 520
DraIII CACNNNGTG 1 cut(s) 786
EaeI YGGCCR 1 cut(s) 574
EagI CGGCCG 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 982
EclXI CGGCCG 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 644, 1020
Eco24I GRGCYC 2 cut(s) 882, 984
Eco31I GGTCTC 1 cut(s) 1164
Eco32I GATATC 1 cut(s) 1012
Eco47I GGWCC 1 cut(s) 291
Eco47III AGCGCT 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 574
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 3 cut(s) 173, 990, 1011
EcoICRI GAGCTC 1 cut(s) 982
EcoRV GATATC 1 cut(s) 1012
EcoT14I CCWWGG 2 cut(s) 644, 1020
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 2 cut(s) 882, 984
ErhI CCWWGG 2 cut(s) 644, 1020
FaeI CATG 8 cut(s) 396, 403, 447, 506, 614, 937, 1024, 1209
FalI AAGNNNNNCTT 2 cut(s) 1080, 1112
FaqI GGGAC 1 cut(s) 845
FatI CATG 8 cut(s) 392, 399, 443, 502, 610, 933, 1020, 1205
FauI CCCGC 1 cut(s) 597
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 2 cut(s) 870, 1074
Fnu4HI GCNGC 2 cut(s) 365, 749
FokI GGATG 2 cut(s) 184, 266
FriOI GRGCYC 2 cut(s) 882, 984
Fsp4HI GCNGC 2 cut(s) 365, 749
FspBI CTAG 4 cut(s) 176, 672, 977, 1226
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 365, 749
GsaI CCCAGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 576
HapII CCGG 2 cut(s) 289, 679
HhaI GCGC 1 cut(s) 228
Hin1II CATG 8 cut(s) 396, 403, 447, 506, 614, 937, 1024, 1209
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HinfI GANTC 4 cut(s) 128, 440, 867, 1025
HpaII CCGG 2 cut(s) 289, 679
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 3 cut(s) 811, 871, 1075
Hpy188I TCNGA 1 cut(s) 356
Hpy188III TCNNGA 3 cut(s) 38, 551, 631
Hpy8I GTNNAC 3 cut(s) 811, 871, 1075
Hpy99I CGWCG 2 cut(s) 54, 332
HpyAV CCTTC 4 cut(s) 148, 347, 628, 787
HpyCH4III ACNGT 2 cut(s) 346, 531
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 8 cut(s) 104, 119, 396, 560, 748, 912, 1100, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 81, 370, 582, 1139, 1210
HpyF3I CTNAG 5 cut(s) 368, 470, 494, 770, 1161
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 8 cut(s) 396, 403, 447, 506, 614, 937, 1024, 1209
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 3 cut(s) 4, 46, 520
LmnI GCTCC 1 cut(s) 1201
LpnPI CCDG 7 cut(s) 40, 85, 302, 616, 692, 981, 1047
Lsp1109I GCAGC 2 cut(s) 351, 760
LweI GCATC 3 cut(s) 113, 162, 1131
MaeI CTAG 4 cut(s) 176, 672, 977, 1226
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 773, 848
MalI GATC 3 cut(s) 6, 48, 522
MboI GATC 3 cut(s) 4, 46, 520
MboII GAAGA 4 cut(s) 170, 178, 291, 983
MfeI CAATTG 1 cut(s) 743
MhlI GDGCHC 3 cut(s) 529, 882, 984
MluCI AATT 6 cut(s) 61, 244, 279, 431, 743, 1083
MlyI GAGTC 1 cut(s) 876
MmeI TCCRAC 3 cut(s) 156, 711, 780
MnlI CCTC 8 cut(s) 162, 244, 651, 677, 891, 996, 1099, 1160
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 4 cut(s) 384, 435, 581, 1086
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 289, 679
MspR9I CCNGG 1 cut(s) 680
MunI CAATTG 1 cut(s) 743
MwoI GCNNNNNNNGC 6 cut(s) 17, 81, 370, 582, 1139, 1210
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 1020
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 4, 46, 520
NlaIII CATG 8 cut(s) 396, 403, 447, 506, 614, 937, 1024, 1209
NlaIV GGNNCC 1 cut(s) 1203
NmuCI GTSAC 1 cut(s) 773
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 403
PciI ACATGT 1 cut(s) 399
PfeI GAWTC 3 cut(s) 128, 440, 1025
PflFI GACNNNGTC 1 cut(s) 806
PflMI CCANNNNNTGG 1 cut(s) 78
PkrI GCNGC 2 cut(s) 366, 750
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
PscI ACATGT 1 cut(s) 399
Psp124BI GAGCTC 1 cut(s) 984
PspFI CCCAGC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 1203
PspPI GGNCC 1 cut(s) 291
PstI CTGCAG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 806
RsaI GTAC 3 cut(s) 479, 533, 959
RsaNI GTAC 3 cut(s) 478, 532, 958
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 984
SaqAI TTAA 4 cut(s) 384, 435, 581, 1086
SatI GCNGC 2 cut(s) 365, 749
Sau3AI GATC 3 cut(s) 4, 46, 520
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 876
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 3 cut(s) 529, 882, 984
SfaNI GCATC 3 cut(s) 113, 162, 1131
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 1225
Sse9I AATT 6 cut(s) 61, 244, 279, 431, 743, 1083
SsiI CCGC 1 cut(s) 590
SspMI CTAG 4 cut(s) 176, 672, 977, 1226
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 2 cut(s) 644, 1020
TaaI ACNGT 2 cut(s) 346, 531
TaiI ACGT 1 cut(s) 55
TaqI TCGA 4 cut(s) 49, 107, 417, 523
TasI AATT 6 cut(s) 61, 244, 279, 431, 743, 1083
TfiI GAWTC 3 cut(s) 128, 440, 1025
Tru1I TTAA 4 cut(s) 384, 435, 581, 1086
Tru9I TTAA 4 cut(s) 384, 435, 581, 1086
TscAI CASTG 2 cut(s) 567, 1084
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 364, 748
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 4 cut(s) 381, 403, 1017, 1058
TspRI CASTG 2 cut(s) 567, 1084
Tth111I GACNNNGTC 1 cut(s) 806
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 2 cut(s) 279, 431
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 2 cut(s) 870, 1074
XspI CTAG 4 cut(s) 176, 672, 977, 1226
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.