Rmu_sc0006219.1_g000003

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006219.1
OG0000053
Physical Location & Seq
Reverse (-)
8302 .. 10592
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006219.1_g000003.1.cds

Sequence Viewer

Length: 1305 bp
atgtctctcaacggggtcaatatagcttctcaagcccctccaacactgaatgcctctactgatgccgatagtcgacgttcggcaaatttccatcccagcatttggggagaccaatttctgtcttgtaacaacactatggaaactgacataaatggtgagcaacatgtccaacaactgaaggacgaagtgaagagagtgctaatggctccgccagttgaaacttgtttaggaaaattggagttgattgatgagattcaacgcttgggcgtgtcttaccattttgaatacgagattgaccaaactatgcagcaaattcacgacaattttaatggtgactgtgatctgcacactagtgctcttcgttttatcttgttgaggcagcatggttacaatgtttcatgcgatatgttcaacaagttcgactacacatcgcttcacgatgatgtagtggggctactaagcttgtatgaagccacacatcttagagtacgaggagaggattttctagaagaagcactaaccttcaccaccacacatctagtgtcggcagcgctagcaaaccgtttaagccccccgctttcgaaacaagtaatgcatgccttgaatcaaccactccggaagggcttaccgaggctagaagcgaggcattacatgtctctccaccaggaactacacggatcacgtaaccaaattttgctgagttttgcaaagctggatttcaacctgctccaacaagtgcatcagaaagaactaagtgatattgcaaggaggacactaaccaaagttattgccatgacatccattatcgatgacatttatgatgtgtatggcacgcttgaagaactagacctctttactagagcaattgagaggtgggacatctcagccatggatgaactaccggagtatatgaaagtctgttacgaggcactgttagatgtctatgctgaaacagaacaggagcttgcaagcaagggacaattatatcgtatcaattacgcaaaagaagcgtttgagcaaaagagaggacatgttgcctcggctgtggaatgttacatgaaacaatacggtgcgacagaagaagaaaccataattgaatttcgtaaacaagtgagtgatgcatggaaggacataaatgaagagtgcctccaccctacacctcttgacatgtccctcttaatgcgagttctgaatctcacacgcgtgatagatgtagtatacaagtctgaagatggctacactcacgctggaaccattctcaaagattttgtagcttctctacttatcgaacctgtgcctgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

434

Amino Acids

49.63

Weight (kDa)

5.05

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 732
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 2 cut(s) 73, 1218
AccII CGCG 1 cut(s) 1203
AccIII TCCGGA 1 cut(s) 615
AciI CCGC 2 cut(s) 209, 575
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 4 cut(s) 85, 312, 690, 1097
AcuI CTGAAG 2 cut(s) 197, 1248
AfaI GTAC 1 cut(s) 489
AfeI AGCGCT 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 102
AflIII ACRYGT 5 cut(s) 163, 651, 1030, 1167, 1201
AgsI TTSAA 8 cut(s) 218, 257, 284, 412, 604, 721, 839, 1097
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 1 cut(s) 663
AleI CACNNNNGTG 2 cut(s) 351, 1202
AluBI AGCT 5 cut(s) 26, 462, 712, 964, 1274
AluI AGCT 5 cut(s) 26, 462, 712, 964, 1274
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 3 cut(s) 9, 102, 660
AlwI GGATC 1 cut(s) 685
Aor13HI TCCGGA 1 cut(s) 615
Aor51HI AGCGCT 1 cut(s) 552
ApeKI GCWGC 3 cut(s) 307, 379, 548
ApoI RAATTY 4 cut(s) 85, 312, 690, 1097
AspLEI GCGC 1 cut(s) 553
AsuHPI GGTGA 3 cut(s) 167, 344, 517
AsuII TTCGAA 1 cut(s) 581
AsuNHI GCTAGC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 319, 391, 560
BccI CCATC 2 cut(s) 99, 1226
BciT130I CCWGG 1 cut(s) 665
BcoDI GTCTC 3 cut(s) 9, 102, 660
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 7 cut(s) 351, 506, 539, 554, 635, 845, 858
BfoI RGCGCY 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 732
BisI GCNGC 3 cut(s) 308, 380, 549
BlsI GCNGC 3 cut(s) 309, 381, 550
Bme1390I CCNGG 1 cut(s) 665
BmiI GGNNCC 2 cut(s) 207, 1252
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 3 cut(s) 52, 748, 1108
BmtI GCTAGC 1 cut(s) 557
Bpu14I TTCGAA 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 629, 888, 1038
BsaWI WCCGGW 2 cut(s) 615, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 615
BseBI CCWGG 1 cut(s) 665
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 3 cut(s) 629, 888, 1038
BseGI GGATG 3 cut(s) 91, 797, 898
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 689, 897
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 507
BseXI GCAGC 3 cut(s) 319, 391, 560
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 1203
BshVI ATCGAT 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 616, 902
BslFI GGGAC 3 cut(s) 890, 990, 1156
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 3 cut(s) 9, 102, 660
BsmFI GGGAC 3 cut(s) 890, 990, 1156
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 358
Bsp13I TCCGGA 1 cut(s) 615
Bsp143I GATC 2 cut(s) 340, 677
Bsp19I CCATGG 1 cut(s) 888
BspACI CCGC 2 cut(s) 209, 575
BspCNI CTCAG 2 cut(s) 690, 896
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 615
BspFNI CGCG 1 cut(s) 1203
BspLI GGNNCC 2 cut(s) 207, 1252
BspMI ACCTGC 1 cut(s) 732
BspOI GCTAGC 1 cut(s) 557
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 629, 888, 1038
BssMI GATC 2 cut(s) 340, 677
BssNAI GTATAC 1 cut(s) 1219
BssT1I CCWWGG 1 cut(s) 888
Bst1107I GTATAC 1 cut(s) 1219
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 4 cut(s) 338, 563, 933, 1070
Bst6I CTCTTC 3 cut(s) 185, 363, 1134
BstBAI YACGTR 1 cut(s) 683
BstBI TTCGAA 1 cut(s) 581
BstC8I GCNNGC 5 cut(s) 555, 597, 833, 966, 970
BstDEI CTNAG 5 cut(s) 458, 482, 698, 752, 883
BstDSI CCRYGG 1 cut(s) 888
BstF5I GGATG 3 cut(s) 91, 797, 898
BstFNI CGCG 1 cut(s) 1203
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 2 cut(s) 343, 680
BstMAI GTCTC 3 cut(s) 9, 102, 660
BstMBI GATC 2 cut(s) 340, 677
BstMWI GCNNNNNNNGC 3 cut(s) 32, 554, 1007
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 5 cut(s) 167, 599, 655, 1034, 1171
BstSCI CCNGG 1 cut(s) 663
BstUI CGCG 1 cut(s) 1203
BstV1I GCAGC 3 cut(s) 319, 391, 560
BstZ17I GTATAC 1 cut(s) 1219
Bsu15I ATCGAT 1 cut(s) 807
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 1 cut(s) 888
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 3 cut(s) 91, 797, 898
BtsIMutI CAGTG 2 cut(s) 44, 929
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 5 cut(s) 555, 597, 833, 966, 970
CfoI GCGC 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 807
Csp6I GTAC 1 cut(s) 488
CviQI GTAC 1 cut(s) 488
DdeI CTNAG 5 cut(s) 458, 482, 698, 752, 883
DpnI GATC 2 cut(s) 342, 679
DpnII GATC 2 cut(s) 340, 677
Eam1104I CTCTTC 3 cut(s) 185, 363, 1134
EarI CTCTTC 3 cut(s) 185, 363, 1134
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 552
Eco57I CTGAAG 2 cut(s) 197, 1248
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 2 cut(s) 597, 1123
ErhI CCWWGG 1 cut(s) 888
FaqI GGGAC 3 cut(s) 890, 990, 1156
FauI CCCGC 1 cut(s) 582
FblI GTMKAC 2 cut(s) 73, 1218
Fnu4HI GCNGC 3 cut(s) 308, 380, 549
FokI GGATG 3 cut(s) 78, 784, 905
Fsp4HI GCNGC 3 cut(s) 308, 380, 549
FspBI CTAG 7 cut(s) 351, 506, 539, 554, 635, 845, 858
GlaI GCGC 1 cut(s) 552
GluI GCNGC 3 cut(s) 308, 380, 549
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 554
HapII CCGG 2 cut(s) 616, 902
HhaI GCGC 1 cut(s) 553
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 3 cut(s) 253, 604, 1192
HpaII CCGG 2 cut(s) 616, 902
HphI GGTGA 3 cut(s) 167, 344, 517
Hpy166II GTNNAC 3 cut(s) 74, 1106, 1219
Hpy188I TCNGA 3 cut(s) 744, 1191, 1228
Hpy188III TCNNGA 5 cut(s) 317, 437, 506, 616, 1163
Hpy8I GTNNAC 3 cut(s) 74, 1106, 1219
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 4 cut(s) 172, 532, 613, 1120
HpyCH4III ACNGT 4 cut(s) 338, 563, 933, 1070
HpyCH4IV ACGT 2 cut(s) 76, 682
HpyCH4V TGCA 8 cut(s) 307, 346, 595, 707, 739, 764, 968, 1121
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 554, 1007
HpyF3I CTNAG 5 cut(s) 458, 482, 698, 752, 883
HpySE526I ACGT 2 cut(s) 76, 682
HspAI GCGC 1 cut(s) 551
Kpn2I TCCGGA 1 cut(s) 615
Kzo9I GATC 2 cut(s) 340, 677
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 3 cut(s) 211, 732, 961
Lsp1109I GCAGC 3 cut(s) 319, 391, 560
LweI GCATC 3 cut(s) 52, 748, 1108
MaeI CTAG 7 cut(s) 351, 506, 539, 554, 635, 845, 858
MaeII ACGT 2 cut(s) 76, 682
MaeIII GTNAC 6 cut(s) 125, 332, 386, 683, 920, 1052
MalI GATC 2 cut(s) 342, 679
MboI GATC 2 cut(s) 340, 677
MboII GAAGA 8 cut(s) 202, 350, 521, 851, 1091, 1094, 1151, 1241
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 1 cut(s) 358
MluI ACGCGT 1 cut(s) 1201
MmeI TCCRAC 3 cut(s) 65, 193, 754
Mph1103I ATGCAT 2 cut(s) 597, 1123
MroI TCCGGA 1 cut(s) 615
MseI TTAA 3 cut(s) 327, 566, 1178
MslI CAYNNNNRTG 3 cut(s) 351, 441, 1202
MspI CCGG 2 cut(s) 616, 902
MspR9I CCNGG 1 cut(s) 665
MunI CAATTG 1 cut(s) 864
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 1203
MwoI GCNNNNNNNGC 3 cut(s) 32, 554, 1007
NcoI CCATGG 1 cut(s) 888
NdeII GATC 2 cut(s) 340, 677
NheI GCTAGC 1 cut(s) 553
NlaIV GGNNCC 2 cut(s) 207, 1252
NmeAIII GCCGAG 1 cut(s) 1019
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 2 cut(s) 597, 1123
NspI RCATGY 5 cut(s) 167, 599, 655, 1034, 1171
NspV TTCGAA 1 cut(s) 581
OliI CACNNNNGTG 2 cut(s) 351, 1202
PaeI GCATGC 1 cut(s) 599
PciI ACATGT 4 cut(s) 163, 651, 1030, 1167
PciSI GCTCTTC 1 cut(s) 363
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 253, 604, 1192
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 3 cut(s) 309, 381, 550
Ppu21I YACGTR 1 cut(s) 683
PscI ACATGT 4 cut(s) 163, 651, 1030, 1167
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 2 cut(s) 207, 1252
RsaI GTAC 1 cut(s) 489
RsaNI GTAC 1 cut(s) 488
RseI CAYNNNNRTG 3 cut(s) 351, 441, 1202
SalI GTCGAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 327, 566, 1178
SatI GCNGC 3 cut(s) 308, 380, 549
Sau3AI GATC 2 cut(s) 340, 677
ScrFI CCNGG 1 cut(s) 665
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 3 cut(s) 52, 748, 1108
SfuI TTCGAA 1 cut(s) 581
SmiMI CAYNNNNRTG 3 cut(s) 351, 441, 1202
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SpeI ACTAGT 1 cut(s) 350
SphI GCATGC 1 cut(s) 599
SsiI CCGC 2 cut(s) 209, 575
SspMI CTAG 7 cut(s) 351, 506, 539, 554, 635, 845, 858
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 4 cut(s) 338, 563, 933, 1070
TaiI ACGT 2 cut(s) 79, 685
TaqI TCGA 5 cut(s) 73, 420, 581, 807, 1287
TfiI GAWTC 3 cut(s) 253, 604, 1192
Tru1I TTAA 3 cut(s) 327, 566, 1178
Tru9I TTAA 3 cut(s) 327, 566, 1178
TscAI CASTG 2 cut(s) 51, 936
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 3 cut(s) 307, 379, 548
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 6 cut(s) 387, 483, 909, 926, 1073, 1152
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 51, 936
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 4 cut(s) 85, 312, 690, 1097
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 5 cut(s) 167, 599, 655, 1034, 1171
XmiI GTMKAC 2 cut(s) 73, 1218
XspI CTAG 7 cut(s) 351, 506, 539, 554, 635, 845, 858
Zsp2I ATGCAT 2 cut(s) 597, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.