Rw0G009100

(-)-alpha-pinene synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00349
OG0000053
Physical Location & Seq
Reverse (-)
12054 .. 14456
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009100.1

Sequence Viewer

Length: 1560 bp
ATGCCTGTCCAAACTATTCCAGCGGCTGCATCCCAGATCAATGCTATGCCAGAAGTTGTTCGGCGCACAGCAAATTATGAACCTAGCGTTTGGGGAGATCGGTTTGCTAACTATGCTGAAGACATTCGCCTTGCTGTGGCTTACCATTTTGAAACTGAAATAGAACAAGCCCTGGAACGTATACATGCTACCTATCAAGATATTAATGATGATGATGGTGATCTGTACAATGTTGCTCTTCGTTTTCGACTACTCAGACGACATGGATATAATGTTTCCTGCGATGTATTCAACAAATTCAAAGATGTTAATGGTGACTTCAAGGAAAGCTTAGTTACTGATGTTTCTGGTATGCTAAGCTTCTATGAGGCAGCCCATCTAATGGTGCATGGAGAAAAATTACTAGAAGAGGCTCTCGTTTTTACCACCACTCATCTCCAGACTGCAACAACTTTAACCGGTGCAAGCTCTCTGCTGAAAGCACAAATAACTGAAGCCCTAGAGAGACCTCTACTAAAAACTGTGGAGAGGTTAGGTGCTCGGCGTTACATGTCAATATACCAAGATGAAGCTTCACACAATAAAGAGTTACTGAAACTTGCCAAGTTAGATTTCAATGTTGTTCAGTGTTACACAAAAAGGAACTCAGTGACTATAAGATGGTATAAGGAACTAGACTTTGCAAGGAAGATGCCTTTTGCTCGAGATAGGCTCGTGGAATTGTTCTTTTGGATTATGGGAATTTATTTTGAACCCCAATACGTGTTCGGGAGAAACATTCTGACGAAGCTGAGTGACATAGTAACAGTAATGGATGATATTTACGATGCATTCGGTACATTTGAAGAACTCGTCATCTTAACTGAAGCAATTGAGAGGTGGGATGCTAGTTGCGTCGATCAACTGCCAGACTATATGAAACCATTTTATCTAACACTTCTGGATGTTGTCAATGAAGTTGGGGAGGAACTGATAAAGCAAGGAAGATCATACCGACTTTACTATGTGAAAGAAATTCTGAAGAATCAAGCCCGGCTCTACTTTGTTGAGGCCAGATGGTTCCACGAAGGATGCACCCCAAGTATGGATGAGTATATGCGTGTTGCGGCAACTTCTGTCGGTAGCACCATGCTTTCAGTGGTATCTTTAGTAGGCATGGGAGACATTATAACAAAAGAGACATTTGAGTGGTTGACCAATGATCCTAAAATTCGTAGAGCTTCGAATACCATATTTAGGCTGATGGATGACATTGCTGGGCACAAGTTTGAGAAAGAGAGAGGGCATGTTGCTTCTAGTATCGATTGCTACATGAATGAATATGGGGTCTCAGAGCAAGAGACAATTGATGTCTTTAACAAACGAATTGTGGATTCGTGGAAGGATATAAACGAAGAGTTTCTGAGACCCACTGCTGCGCCAGTGCCTGTGCTTAATCGTGTTCTTCACCTAACTCGAGTGATTGATCTCCTTTACAAAAGGGGAGATGCCTTCACGCATGTTGGAAAACTGATGAAAGATACTATTGCTTCACTGTTTATTGATCCGGTGCCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

519

Amino Acids

59.93

Weight (kDa)

5.34

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 43 - 167 5.9e-46 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 223 - 462 2.1e-96 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 265 - 462 8.4e-58 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1169
AccB1I GGYRCC 1 cut(s) 1549
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 1 cut(s) 181
AciI CCGC 2 cut(s) 23, 1106
AclWI GGATC 2 cut(s) 1196, 1538
AcsI RAATTY 4 cut(s) 296, 741, 1014, 1209
AcuI CTGAAG 4 cut(s) 138, 513, 885, 1040
AfaI GTAC 2 cut(s) 227, 838
AfiI CCNNNNNNNGG 4 cut(s) 136, 382, 1084, 1236
AflIII ACRYGT 2 cut(s) 549, 762
AgeI ACCGGT 1 cut(s) 458
AgsI TTSAA 7 cut(s) 152, 292, 301, 322, 616, 752, 845
AjnI CCWGG 1 cut(s) 171
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 6 cut(s) 330, 360, 468, 572, 790, 1220
AluI AGCT 6 cut(s) 330, 360, 468, 572, 790, 1220
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 6 cut(s) 499, 1155, 1172, 1333, 1334, 1399
AlwI GGATC 2 cut(s) 1196, 1538
AlwNI CAGNNNCTG 2 cut(s) 26, 1427
Ama87I CYCGRG 2 cut(s) 702, 1455
AoxI GGCC 1 cut(s) 1050
ApeKI GCWGC 3 cut(s) 26, 371, 1415
ApoI RAATTY 4 cut(s) 296, 741, 1014, 1209
AseI ATTAAT 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 458
Asp700I GAANNNNTTC 3 cut(s) 57, 123, 1398
AspLEI GCGC 2 cut(s) 66, 1420
AsuC2I CCSGG 1 cut(s) 1033
AsuHPI GGTGA 3 cut(s) 230, 326, 1439
AsuII TTCGAA 1 cut(s) 1223
AvaI CYCGRG 2 cut(s) 702, 1455
BaeGI GKGCMC 1 cut(s) 1263
BanI GGYRCC 1 cut(s) 1549
BauI CACGAG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 13, 383, 1402
BccI CCATC 5 cut(s) 209, 384, 654, 1050, 1237
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 1033
BcoDI GTCTC 6 cut(s) 499, 1155, 1172, 1333, 1334, 1399
BfaI CTAG 6 cut(s) 84, 404, 500, 674, 888, 1296
BisI GCNGC 5 cut(s) 24, 27, 372, 1107, 1416
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 5 cut(s) 25, 28, 373, 1108, 1417
Bme1390I CCNGG 2 cut(s) 173, 1033
BmeT110I CYCGRG 2 cut(s) 702, 1455
BmiI GGNNCC 2 cut(s) 1061, 1551
BmrFI CCNGG 2 cut(s) 173, 1033
BmsI GCATC 6 cut(s) 38, 681, 817, 874, 1061, 1477
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpmI CTGGAG 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 1223
BpuMI CCSGG 1 cut(s) 1033
Bsa29I ATCGAT 1 cut(s) 1302
BsaAI YACGTR 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 3 cut(s) 499, 1333, 1399
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 2 cut(s) 458, 1546
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 382, 1084, 1236
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 1421
Bse3DI GCAATG 1 cut(s) 1251
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 1302
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 7 cut(s) 29, 820, 889, 949, 1076, 1093, 1252
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 136, 382, 1084, 1236
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 5 cut(s) 268, 660, 782, 1344, 1394
BseNI ACTGG 1 cut(s) 1421
BseSI GKGCMC 1 cut(s) 1263
BseXI GCAGC 3 cut(s) 13, 383, 1402
BseYI CCCAGC 1 cut(s) 1256
BshFI GGCC 1 cut(s) 1052
BshNI GGYRCC 1 cut(s) 1549
BshTI ACCGGT 1 cut(s) 458
BshVI ATCGAT 1 cut(s) 1302
BsiHKAI GWGCWC 1 cut(s) 541
BsiHKCI CYCGRG 2 cut(s) 702, 1455
BsiSI CCGG 3 cut(s) 459, 1033, 1547
BslI CCNNNNNNNGG 4 cut(s) 136, 382, 1084, 1236
BsmAI GTCTC 6 cut(s) 499, 1155, 1172, 1333, 1334, 1399
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 1 cut(s) 1052
Bso31I GGTCTC 3 cut(s) 499, 1333, 1399
BsoBI CYCGRG 2 cut(s) 702, 1455
Bsp119I TTCGAA 1 cut(s) 1223
Bsp1286I GDGCHC 2 cut(s) 541, 1263
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
Bsp1720I GCTNAGC 1 cut(s) 356
BspACI CCGC 2 cut(s) 23, 1106
BspANI GGCC 1 cut(s) 1052
BspCNI CTCAG 5 cut(s) 267, 659, 783, 1343, 1395
BspDI ATCGAT 1 cut(s) 1302
BspLI GGNNCC 2 cut(s) 1061, 1551
BspPI GGATC 2 cut(s) 1196, 1538
BspQI GCTCTTC 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 1223
BspT107I GGYRCC 1 cut(s) 1549
BspTNI GGTCTC 3 cut(s) 499, 1333, 1399
BsrDI GCAATG 1 cut(s) 1251
BsrFI RCCGGY 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 1421
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
BssNAI GTATAC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 713
Bst1107I GTATAC 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 523, 808, 1536
Bst6I CTCTTC 3 cut(s) 243, 402, 1389
BstAUI TGTACA 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 763
BstBI TTCGAA 1 cut(s) 1223
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 7 cut(s) 254, 331, 356, 646, 791, 1330, 1403
BstF5I GGATG 7 cut(s) 29, 820, 889, 949, 1076, 1093, 1252
BstHHI GCGC 2 cut(s) 66, 1420
BstKTI GATC 8 cut(s) 39, 100, 223, 901, 989, 1204, 1468, 1546
BstMAI GTCTC 6 cut(s) 499, 1155, 1172, 1333, 1334, 1399
BstMBI GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 4 cut(s) 188, 553, 1289, 1502
BstSCI CCNGG 2 cut(s) 171, 1031
BstSLI GKGCMC 1 cut(s) 1263
BstV1I GCAGC 3 cut(s) 13, 383, 1402
BstV2I GAAGAC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 1302
BsuRI GGCC 1 cut(s) 1052
BsuTUI ATCGAT 1 cut(s) 1302
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 7 cut(s) 29, 820, 889, 949, 1076, 1093, 1252
BtsI GCAGTG 1 cut(s) 1410
BtsIMutI CAGTG 6 cut(s) 632, 654, 1143, 1410, 1428, 1532
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 2 cut(s) 26, 1427
CfoI GCGC 2 cut(s) 66, 1420
Cfr10I RCCGGY 1 cut(s) 458
ClaI ATCGAT 1 cut(s) 1302
CseI GACGC 1 cut(s) 883
Csp6I GTAC 2 cut(s) 226, 837
CspAI ACCGGT 1 cut(s) 458
CviAII CATG 9 cut(s) 185, 263, 389, 550, 1129, 1156, 1286, 1312, 1499
CviQI GTAC 2 cut(s) 226, 837
DdeI CTNAG 7 cut(s) 254, 331, 356, 646, 791, 1330, 1403
DpnI GATC 8 cut(s) 38, 99, 222, 900, 988, 1203, 1467, 1545
DpnII GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
Eam1104I CTCTTC 3 cut(s) 243, 402, 1389
EarI CTCTTC 3 cut(s) 243, 402, 1389
Eco31I GGTCTC 3 cut(s) 499, 1333, 1399
Eco57I CTGAAG 4 cut(s) 138, 513, 885, 1040
Eco88I CYCGRG 2 cut(s) 702, 1455
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 832
FaeI CATG 9 cut(s) 188, 266, 392, 553, 1132, 1159, 1289, 1315, 1502
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 9 cut(s) 184, 262, 388, 549, 1128, 1155, 1285, 1311, 1498
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 24, 27, 372, 1107, 1416
FokI GGATG 7 cut(s) 16, 827, 896, 956, 1083, 1100, 1259
Fsp4HI GCNGC 5 cut(s) 24, 27, 372, 1107, 1416
FspBI CTAG 6 cut(s) 84, 404, 500, 674, 888, 1296
GlaI GCGC 2 cut(s) 65, 1419
GluI GCNGC 5 cut(s) 24, 27, 372, 1107, 1416
GsaI CCCAGC 1 cut(s) 1260
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 1052
HapII CCGG 3 cut(s) 459, 1033, 1547
HgaI GACGC 1 cut(s) 883
HhaI GCGC 2 cut(s) 66, 1420
Hin1II CATG 9 cut(s) 188, 266, 392, 553, 1132, 1159, 1289, 1315, 1502
Hin6I GCGC 2 cut(s) 64, 1418
HinP1I GCGC 2 cut(s) 64, 1418
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HindIII AAGCTT 3 cut(s) 328, 358, 570
HinfI GANTC 2 cut(s) 1024, 1373
HpaII CCGG 3 cut(s) 459, 1033, 1547
HphI GGTGA 3 cut(s) 230, 326, 1439
Hpy166II GTNNAC 2 cut(s) 182, 1194
Hpy188I TCNGA 6 cut(s) 257, 783, 1020, 1333, 1404, 1559
Hpy188III TCNNGA 5 cut(s) 197, 439, 704, 769, 941
Hpy8I GTNNAC 2 cut(s) 182, 1194
Hpy99I CGWCG 1 cut(s) 899
HpyAV CCTTC 3 cut(s) 1061, 1375, 1501
HpyCH4III ACNGT 3 cut(s) 523, 808, 1536
HpyCH4IV ACGT 2 cut(s) 178, 762
HpyCH4V TGCA 7 cut(s) 29, 388, 446, 464, 683, 830, 1074
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 7 cut(s) 254, 331, 356, 646, 791, 1330, 1403
HpySE526I ACGT 2 cut(s) 178, 762
Hsp92II CATG 9 cut(s) 188, 266, 392, 553, 1132, 1159, 1289, 1315, 1502
HspAI GCGC 2 cut(s) 64, 1418
Kzo9I GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
LguI GCTCTTC 1 cut(s) 243
Lsp1109I GCAGC 3 cut(s) 13, 383, 1402
LweI GCATC 6 cut(s) 38, 681, 817, 874, 1061, 1477
MaeI CTAG 6 cut(s) 84, 404, 500, 674, 888, 1296
MaeII ACGT 2 cut(s) 178, 762
MaeIII GTNAC 8 cut(s) 314, 334, 545, 588, 629, 649, 794, 802
MalI GATC 8 cut(s) 38, 99, 222, 900, 988, 1203, 1467, 1545
MboI GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
MboII GAAGA 9 cut(s) 131, 230, 419, 700, 857, 996, 1033, 1406, 1436
MfeI CAATTG 2 cut(s) 870, 1344
MhlI GDGCHC 2 cut(s) 541, 1263
MmeI TCCRAC 1 cut(s) 1483
MnlI CCTC 8 cut(s) 361, 403, 519, 522, 870, 958, 1042, 1274
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 3 cut(s) 57, 123, 1398
MseI TTAA 6 cut(s) 204, 309, 455, 860, 1356, 1434
MslI CAYNNNNRTG 1 cut(s) 1186
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 3 cut(s) 459, 1033, 1547
MspR9I CCNGG 2 cut(s) 173, 1033
MunI CAATTG 2 cut(s) 870, 1344
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 1033
NdeII GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
NlaIII CATG 9 cut(s) 188, 266, 392, 553, 1132, 1159, 1289, 1315, 1502
NlaIV GGNNCC 2 cut(s) 1061, 1551
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 3 cut(s) 314, 649, 794
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 4 cut(s) 188, 553, 1289, 1502
NspV TTCGAA 1 cut(s) 1223
PaeR7I CTCGAG 2 cut(s) 702, 1455
PciI ACATGT 1 cut(s) 549
PciSI GCTCTTC 1 cut(s) 243
PctI GAATGC 1 cut(s) 830
PdmI GAANNNNTTC 3 cut(s) 57, 123, 1398
PfeI GAWTC 2 cut(s) 1024, 1373
PflMI CCANNNNNTGG 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 458
PkrI GCNGC 5 cut(s) 25, 28, 373, 1108, 1417
Ppu21I YACGTR 1 cut(s) 763
PscI ACATGT 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 204
PsiI TTATAA 1 cut(s) 1169
Psp6I CCWGG 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 1256
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 1061, 1551
PspXI VCTCGAGB 1 cut(s) 1455
PstNI CAGNNNCTG 2 cut(s) 26, 1427
RsaI GTAC 2 cut(s) 227, 838
RsaNI GTAC 2 cut(s) 226, 837
RseI CAYNNNNRTG 1 cut(s) 1186
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 6 cut(s) 204, 309, 455, 860, 1356, 1434
SatI GCNGC 5 cut(s) 24, 27, 372, 1107, 1416
Sau3AI GATC 8 cut(s) 36, 97, 220, 898, 986, 1201, 1465, 1543
ScrFI CCNGG 2 cut(s) 173, 1033
SduI GDGCHC 2 cut(s) 541, 1263
SfaNI GCATC 6 cut(s) 38, 681, 817, 874, 1061, 1477
Sfr274I CTCGAG 2 cut(s) 702, 1455
SfuI TTCGAA 1 cut(s) 1223
SlaI CTCGAG 2 cut(s) 702, 1455
SmiMI CAYNNNNRTG 1 cut(s) 1186
SmlI CTYRAG 2 cut(s) 702, 1455
SmoI CTYRAG 2 cut(s) 702, 1455
SsiI CCGC 2 cut(s) 23, 1106
SspMI CTAG 6 cut(s) 84, 404, 500, 674, 888, 1296
StyD4I CCNGG 2 cut(s) 171, 1031
TaaI ACNGT 3 cut(s) 523, 808, 1536
TaiI ACGT 2 cut(s) 181, 765
TaqI TCGA 6 cut(s) 247, 703, 897, 1223, 1302, 1456
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 26, 1109
TfiI GAWTC 2 cut(s) 1024, 1373
Tru1I TTAA 6 cut(s) 204, 309, 455, 860, 1356, 1434
Tru9I TTAA 6 cut(s) 204, 309, 455, 860, 1356, 1434
TscAI CASTG 6 cut(s) 632, 654, 1143, 1417, 1428, 1539
TseFI GTSAC 3 cut(s) 314, 649, 794
TseI GCWGC 3 cut(s) 26, 371, 1415
Tsp45I GTSAC 3 cut(s) 314, 649, 794
TspDTI ATGAA 7 cut(s) 93, 582, 932, 969, 1328, 1332, 1529
TspRI CASTG 6 cut(s) 632, 654, 1143, 1417, 1428, 1539
Van91I CCANNNNNTGG 1 cut(s) 382
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 4 cut(s) 296, 741, 1014, 1209
XceI RCATGY 4 cut(s) 188, 553, 1289, 1502
XcmI CCANNNNNNNNNTGG 1 cut(s) 1135
XhoI CTCGAG 2 cut(s) 702, 1455
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 3 cut(s) 57, 123, 1398
XspI CTAG 6 cut(s) 84, 404, 500, 674, 888, 1296
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.