Rroxscaffold_1G00042840

(-)-germacrene D synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000053
Physical Location & Seq
Forward (+)
61134282 .. 61146521
12240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042840.1

Sequence Viewer

Length: 1965 bp
ATGTCTCTCAACGTGGTCAGTGTAACTTCTCAAGCCCCTCCTACCCTGAATGCCTCTACTGATGCCGATAGTCGACGTTCGGCTAATTTCCATCCCAGCATTTGGGGAGATCAGTTTCTGTCTTATAACAACACTATGGAAACTAACATAAATGGTGAGCAACATGTCCAACAACTGAAGGAAGAAGTGAAGACAATGCTAATGGCTCCGCCAGTTCAAACAAGTTTGGGAAAACTGGAGTTGATTGATGACATTCAACGCTTGGGTGTGTCTTACCATTTTGAATACGAAATTGACCAAACTATGCAACAAATTCACCACAGTTTTAATGGTTACTGTGATGATGATCTGCACACTTGTGCTCTTCGGTTTCGTTTGCTGAGGCAGCATGGTTACAATGTTTCATGCGGTAAAAGTACGAGGAGAGGATTTTCTAGAAGAAGCACTAACCTTCACCACCACACATCTAGCGTCGGCAGTGCTAGCAAACCGTTTAAGCCCCCGCTTTCGAAACAAGTAAGGCATGCCTTGAATCAACCACTCCGGAAGGGCTTACCGAGGCTAGAAGCGAGGCACTACATGTCTCTCCACCAGGAACTACACGGATCACGTAACCAAATTTTGCTGAGTTTTGCAAAGCTGGATTTCAACCTGCTCCAACAATTGCATCAGAAAGAACTAAGTGATATTGCAAGGTGGTGGAAGGAGTTGGACTTTGCTAGAAAGCTACCTTTTGCAAGAGACAGAGTAATTGAGTGCTACTTTTGGATTTTGGGAGTCTACTTTGAGCCCAAGTATTACTTTGCCAGGAGGACACTAACCAAAGTTATTGCCATGACATCCATTATCGATGACATTTATGATGTGTATGGCACGCTTGAAGAACTAGACCTTTTTACTAGAGCAATTGAGAGGTTTGAGATTGATACACACACACACACACACGCACACACTTTTTCCCTTATATTATATAACATCAATTTATTCCTAACAAAAGTTTCTCCACGTATAATCGCCGTTGTCTTGCTTATATGCAGGTGGGACATCTCCGCCATGGATGAACTACCGGAGTATATGAAAGTCTGTTACGAGGCACTGTTAGATGTCTATGCTGATACAGAACAACAGCTTGCAAGCGAGGGAAGATTATATCGTATCGATTACGCAAAAGAAGCGATGAAGAGACAAGTTAGGGCGTACCATGCTGAAGCAAAATGGTTTCACAAGAACTACACACCAACAATGGATGAATACATGGAAGTAGCCCTTGTCACTTCAGCCAACTCAATGCTAGCAACCACATCCTTTGTTGGAATGGGAGATATCGTTACAAAAGACTCCTTTGAGTGGATCTTCAGTGACCCTAAGATTGTAAAGGCTTCATCAGTAGTTTGCAGATTCATGGATGACATTGTATCCCACAAGTTTGAGCAAAAGAGAGGACATGTTGCCTCGGCTGTGGAATGTTACATGAAACAATACGGTGCGACAGAAGAACAAACCATAATTGAATTTCGTAAACAAGTGAGTGATGCATGGAAGGACATAAATGAAGAGTGCCTCCACTCTACACCTCTTGAAATGCCGCTCTTAATGCGAGTTCTGAATCTCACACGCGTGATAGATGTAGTATACAAGTCTGAAGATGGCTACACTCATGCTGGAACCATTCTCAAAGATTTTGTAGCTTCTCTACTTATCGAACCTGTGCCTGTGCCTAAAACTGAGGTTGGAAGTGATGCCATAGAACTTCCTACTAGTGGTGGTGGTGATTTGGATGCAACATCTGGCATCAGTCCAGACCAAATTATTGCATTTTTTGACACTGGTACAACATTGGCTCATTTACCACCAAAGTTGTATGAACCAATAGTGAAGAAGGAGGGTGCCTGGTGTCATGGTTGGATGAAATTAACTGGGGAAGACCCCGACATTATTCTGGGAGGATATGGTGATTTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

654

Amino Acids

74.82

Weight (kDa)

5.98

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 34 - 136 1.6e-30 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 235 - 311 9.8e-32 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 275 - 515 1.8e-55 Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C PF03936 343 - 515 3.7e-67 Terpene synthase family, metal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23960 AT5G23960
fragaria_vesca FvH4_1g04000 FvH4_1g04000 FvH4_1g05400 FvH4_3g01590 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21390 FvH4_3g21391 FvH4_3g21490 FvH4_3g21560 FvH4_3g22162 FvH4_3g32100 FvH4_4g27781 FvH4_4g27790 FvH4_4g27860 FvH4_4g27870 FvH4_4g27940 FvH4_4g27943 FvH4_4g27950 FvH4_4g27951 FvH4_4g27952 FvH4_5g06461 FvH4_5g06470 FvH4_5g06530 FvH4_5g35700 FvH4_5g35711 FvH4_5g35712 FvH4_6g06540 FvH4_6g11440 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_6g19050 FvH4_7g03620 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g13030 FvH4_7g33640 FvH4_7g33640 FvH4_7g33750 FvH4_7g33750
malus_domestica MD00G1215200.v1.1 MD03G1206700.v1.1 MD03G1207000.v1.1 MD03G1214900.v1.1 MD03G1218300.v1.1 MD03G1218400.v1.1 MD07G1269200.v1.1 MD11G1232100.v1.1 MD11G1232700.v1.1 MD11G1236200.v1.1 MD11G1236500.v1.1 MD11G1236600.v1.1 MD12G1162900.v1.1 MD12G1163000.v1.1 MD12G1163400.v1.1 MD12G1163700.v1.1 MD12G1163800.v1.1 MD16G1070800.v1.1
prunus_persica Prupe.4G190700_v2.0.a1 Prupe.4G190800_v2.0.a1 Prupe.4G191000_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194100_v2.0.a1 Prupe.4G194200_v2.0.a1 Prupe.4G194300_v2.0.a1 Prupe.4G194400_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194500_v2.0.a1 Prupe.4G194600_v2.0.a1 Prupe.4G197900_v2.0.a1 Prupe.4G198000_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198200_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198500_v2.0.a1 Prupe.4G198600_v2.0.a1 Prupe.4G198700_v2.0.a1 Prupe.4G199000_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199200_v2.0.a1 Prupe.4G199300_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G199500_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200000_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G200100_v2.0.a1 Prupe.4G238900_v2.0.a1
pyrus_communis pycom03g16780 pycom11g20550 pycom11g20570 pycom11g20780 pycom12g15470 pycom12g15530 pycom12g15590 pycom12g15600
rosa_chinensis RchiOBHm_Chr1g0313881 RchiOBHm_Chr1g0326011 RchiOBHm_Chr1g0326051 RchiOBHm_Chr1g0326061 RchiOBHm_Chr1g0326071 RchiOBHm_Chr1g0326251 RchiOBHm_Chr1g0326311 RchiOBHm_Chr1g0326331 RchiOBHm_Chr1g0326351 RchiOBHm_Chr1g0326391 RchiOBHm_Chr3g0474051 RchiOBHm_Chr3g0474411 RchiOBHm_Chr3g0474441 RchiOBHm_Chr3g0474501 RchiOBHm_Chr3g0474541 RchiOBHm_Chr3g0475221 RchiOBHm_Chr3g0490681 RchiOBHm_Chr4g0418071 RchiOBHm_Chr5g0036921 RchiOBHm_Chr5g0037011 RchiOBHm_Chr5g0037601 RchiOBHm_Chr5g0038021 RchiOBHm_Chr5g0038101 RchiOBHm_Chr5g0044191 RchiOBHm_Chr5g0059501 RchiOBHm_Chr5g0059511 RchiOBHm_Chr5g0059541 RchiOBHm_Chr5g0060241 RchiOBHm_Chr5g0060261 RchiOBHm_Chr5g0060571 RchiOBHm_Chr5g0065101 RchiOBHm_Chr6g0245681 RchiOBHm_Chr6g0245691 RchiOBHm_Chr6g0245751 RchiOBHm_Chr6g0246001 RchiOBHm_Chr6g0246011 RchiOBHm_Chr6g0265741 RchiOBHm_Chr6g0270581 RchiOBHm_Chr6g0274871 RchiOBHm_Chr6g0305391 RchiOBHm_Chr7g0210371 RchiOBHm_Chr7g0212441 RchiOBHm_Chr7g0227831 RchiOBHm_Chr7g0228501
rosa_laevigata RLG00000001556 RLG00000001557 RLG00000001562 RLG00000002890 RLG00000006572 RLG00000008725 RLG00000014163 RLG00000015277 RLG00000017042 RLG00000018206 RLG00000023912 RLG00000023916 RLG00000023920 RLG00000023955 RLG00000028351 RLG00000028821 RLG00000028822 RLG00000028823 RLG00000028824 RLG00000029856 RLG00000030075 RLG00000030076 RLG00000030080 RLG00000033743 RLG00000034250 RLG00000035299 RLG00000035350 RLG00000035387 RLG00000035755
rosa_multiflora Rmu_co8151952.1_g000001 Rmu_co8453003.1_g000001 Rmu_sc0000028.1_g000016 Rmu_sc0000208.1_g000003 Rmu_sc0000535.1_g000005 Rmu_sc0000535.1_g000015 Rmu_sc0000613.1_g000028 Rmu_sc0001217.1_g000009 Rmu_sc0001217.1_g000020 Rmu_sc0001353.1_g000001 Rmu_sc0001353.1_g000030 Rmu_sc0002281.1_g000004 Rmu_sc0002281.1_g000021 Rmu_sc0002670.1_g000004 Rmu_sc0002782.1_g000013 Rmu_sc0002915.1_g000015 Rmu_sc0003032.1_g000026 Rmu_sc0004042.1_g000001 Rmu_sc0004192.1_g000012 Rmu_sc0004192.1_g000022 Rmu_sc0004391.1_g000015 Rmu_sc0004507.1_g000042 Rmu_sc0004507.1_g000044 Rmu_sc0006021.1_g000024 Rmu_sc0006219.1_g000003 Rmu_sc0006435.1_g000010 Rmu_sc0007576.1_g000002 Rmu_sc0011334.1_g000013 Rmu_sc0024896.1_g000001 Rmu_ssc0000062.1_g000038 Rmu_ssc0000410.1_g000031
rosa_roxburghii Rroxscaffold_175G00432520 Rroxscaffold_1G00016230 Rroxscaffold_1G00040400 Rroxscaffold_1G00042840 Rroxscaffold_1G00042960 Rroxscaffold_1G00043940 Rroxscaffold_1G00044030 Rroxscaffold_2G00123010 Rroxscaffold_2G00123030 Rroxscaffold_2G00123040 Rroxscaffold_3G00231080 Rroxscaffold_3G00235280 Rroxscaffold_3G00246840 Rroxscaffold_3G00246850 Rroxscaffold_4G00303170 Rroxscaffold_4G00317190 Rroxscaffold_4G00323790 Rroxscaffold_4G00323810 Rroxscaffold_4G00323850 Rroxscaffold_4G00324000 Rroxscaffold_6G00407090 Rroxscaffold_6G00407140 Rroxscaffold_6G00407170 Rroxscaffold_6G00407190 Rroxscaffold_6G00407540 Rroxscaffold_7G00197730 Rroxscaffold_7G00197820 Rroxscaffold_7G00202480 Rroxscaffold_7G00215030
rosa_rugosa Rorug01G0058200 Rorug01G0058300 Rorug01G0058500 Rorug01G0060200 Rorug01G0225900 Rorug03G0137700 Rorug03G0137800 Rorug03G0137900 Rorug03G0138000 Rorug03G0138100 Rorug03G0140800 Rorug03G0141100 Rorug03G0141200 Rorug03G0245500 Rorug03G0295300 Rorug03G0295400 Rorug03G0295500 Rorug03G0295800 Rorug03G0296000 Rorug05G0158700 Rorug05G0158800 Rorug05G0158900 Rorug05G0159800 Rorug05G0159800 Rorug05G0170800 Rorug05G0170900 Rorug05G0170900 Rorug05G0211100 Rorug05G0211200 Rorug05G0246600 Rorug05G0328600 Rorug05G0367800 Rorug05G0518400 Rorug06G0018600 Rorug06G0055600 Rorug07G0250400 RorugMtG0003800.1 RorugMtG0003900.1 RorugMtG0004200.1
rosa_samantha Rh1AG007500 Rh1AG075300 Rh1AG075700 Rh1AG240100 Rh1BG060500 Rh1BG060600 Rh1BG061000 Rh1BG062200 Rh3BG217100 Rh3BG221000 Rh3BG221200 Rh3BG221600 Rh3BG222000 Rh3BG227500 Rh3DG212800 Rh3DG212900 Rh3DG216600 Rh3DG217100 Rh3DG217400 Rh5BG253400 Rh5BG261900 Rh5BG303800 Rh5BG399200 Rh5BG399300 Rh5BG399400 Rh5BG399600 Rh5BG405300 Rh5BG405400 Rh5BG441500 Rh5CG282400 Rh5CG285300 Rh5CG286100 Rh5CG290300 Rh5CG294000 Rh5CG331000 Rh5CG359600 Rh5CG423200 Rh5CG423300 Rh5CG423400 Rh5CG423700 Rh5CG429400 Rh5CG431900 Rh5CG464200 Rh5DG262000 Rh6AG030300 Rh6AG030500 Rh6AG030600 Rh6AG032900 Rh6AG140400 Rh6AG141200 Rh6AG270000 Rh6AG451900 Rh6CG137800 Rh6DG027700 Rh6DG124300 Rh6DG124700 Rh6DG166400 Rh6DG452500 Rh7BG383200 Rh7CG283600 Rh7CG421200 Rh7CG421400 Rh7CG421800
rosa_wichuraiana Rw0G002000 Rw0G009100 Rw0G012450 Rw0G015810 Rw1G005940 Rw1G006020 Rw1G006040 Rw1G006060 Rw1G013290 Rw3G017240 Rw3G017250 Rw3G017470 Rw3G017500 Rw3G017520 Rw5G022920 Rw5G023200 Rw5G023620 Rw5G023940 Rw5G024130 Rw5G024170 Rw5G027380 Rw5G027440 Rw5G036040 Rw5G036500 Rw5G036540 Rw5G036560 Rw5G037000 Rw5G037270 Rw5G040050 Rw6G002730 Rw6G012120 Rw6G012190 Rw6G014890 Rw6G017470 Rw6G039370 Rw7G022830 Rw7G033440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AarI CACCTGC 1 cut(s) 1026
Acc36I ACCTGC 2 cut(s) 660, 1026
AccB1I GGYRCC 1 cut(s) 1886
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 1588
AccI GTMKAC 3 cut(s) 73, 780, 1632
AccII CGCG 1 cut(s) 1617
AccIII TCCGGA 1 cut(s) 543
AciI CCGC 5 cut(s) 209, 408, 503, 1050, 1586
AclWI GGATC 2 cut(s) 613, 1358
AcsI RAATTY 3 cut(s) 312, 618, 1511
AcuI CTGAAG 5 cut(s) 197, 1227, 1260, 1339, 1662
AfaI GTAC 3 cut(s) 418, 1199, 1831
AfiI CCNNNNNNNGG 3 cut(s) 102, 1347, 1760
AflIII ACRYGT 4 cut(s) 163, 579, 1444, 1615
AgsI TTSAA 8 cut(s) 218, 257, 284, 532, 649, 881, 1511, 1580
AhlI ACTAGT 1 cut(s) 1757
AjnI CCWGG 3 cut(s) 591, 806, 1889
AleI CACNNNNGTG 2 cut(s) 357, 1616
AluBI AGCT 4 cut(s) 640, 727, 1129, 1688
AluI AGCT 4 cut(s) 640, 727, 1129, 1688
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 4 cut(s) 9, 588, 735, 1177
AlwI GGATC 2 cut(s) 613, 1358
AlwNI CAGNNNCTG 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 543
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 3 cut(s) 312, 618, 1511
AsuHPI GGTGA 5 cut(s) 167, 308, 446, 1781, 1964
AsuII TTCGAA 1 cut(s) 509
AsuNHI GCTAGC 2 cut(s) 482, 1291
BanI GGYRCC 1 cut(s) 1886
BanII GRGCYC 1 cut(s) 792
BbsI GAAGAC 2 cut(s) 197, 1929
Bbv12I GWGCWC 1 cut(s) 364
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 99, 1640
BceAI ACGGC 1 cut(s) 1001
BciT130I CCWGG 3 cut(s) 593, 808, 1891
BciVI GTATCC 1 cut(s) 1426
BcoDI GTCTC 4 cut(s) 9, 588, 735, 1177
BcuI ACTAGT 1 cut(s) 1757
BfaI CTAG 9 cut(s) 435, 468, 483, 563, 720, 887, 900, 1292, 1758
BfuAI ACCTGC 2 cut(s) 660, 1026
BfuI GTATCC 1 cut(s) 1426
BisI GCNGC 2 cut(s) 386, 1586
BlsI GCNGC 2 cut(s) 387, 1587
Bme1390I CCNGG 3 cut(s) 593, 808, 1891
BmiI GGNNCC 3 cut(s) 207, 1666, 1888
BmrFI CCNGG 3 cut(s) 593, 808, 1891
BmrI ACTGGG 1 cut(s) 1926
BmsI GCATC 6 cut(s) 52, 676, 1522, 1729, 1768, 1800
BmtI GCTAGC 2 cut(s) 486, 1295
BmuI ACTGGG 1 cut(s) 1926
BpiI GAAGAC 2 cut(s) 197, 1929
BpmI CTGGAG 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 2 cut(s) 849, 1158
BsaAI YACGTR 2 cut(s) 611, 1007
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 557, 1053, 1452
BsaWI WCCGGW 2 cut(s) 543, 1066
BsaXI ACNNNNNCTCC 2 cut(s) 1311, 1341
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 1347, 1760
Bse1I ACTGG 4 cut(s) 212, 240, 1831, 1921
Bse8I GATNNNNATC 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 3 cut(s) 593, 808, 1891
BseCI ATCGAT 2 cut(s) 849, 1158
BseDI CCNNGG 3 cut(s) 557, 1053, 1452
BseGI GGATG 8 cut(s) 91, 839, 1063, 1252, 1301, 1411, 1783, 1911
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 102, 1347, 1760
BseMII CTCAG 3 cut(s) 371, 617, 1716
BseNI ACTGG 4 cut(s) 212, 240, 1831, 1921
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 397
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 1617
BshNI GGYRCC 1 cut(s) 1886
BshVI ATCGAT 2 cut(s) 849, 1158
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 2 cut(s) 544, 1067
BslFI GGGAC 1 cut(s) 1055
BslI CCNNNNNNNGG 3 cut(s) 102, 1347, 1760
BsmAI GTCTC 4 cut(s) 9, 588, 735, 1177
BsmFI GGGAC 1 cut(s) 1055
BsmI GAATGC 1 cut(s) 55
Bsp119I TTCGAA 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 364, 792
Bsp13I TCCGGA 1 cut(s) 543
Bsp143I GATC 4 cut(s) 109, 346, 605, 1350
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 5 cut(s) 209, 408, 503, 1050, 1586
BspCNI CTCAG 3 cut(s) 372, 618, 1717
BspDI ATCGAT 2 cut(s) 849, 1158
BspEI TCCGGA 1 cut(s) 543
BspFNI CGCG 1 cut(s) 1617
BspLI GGNNCC 3 cut(s) 207, 1666, 1888
BspMI ACCTGC 2 cut(s) 660, 1026
BspOI GCTAGC 2 cut(s) 486, 1295
BspPI GGATC 2 cut(s) 613, 1358
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 1886
BsrBI CCGCTC 1 cut(s) 1588
BsrI ACTGG 4 cut(s) 212, 240, 1831, 1921
BssECI CCNNGG 3 cut(s) 557, 1053, 1452
BssMI GATC 4 cut(s) 109, 346, 605, 1350
BssNAI GTATAC 1 cut(s) 1633
BssT1I CCWWGG 1 cut(s) 1053
Bst1107I GTATAC 1 cut(s) 1633
Bst2UI CCWGG 3 cut(s) 593, 808, 1891
Bst4CI ACNGT 5 cut(s) 323, 338, 492, 1098, 1484
Bst6I CTCTTC 3 cut(s) 369, 1175, 1548
BstBAI YACGTR 2 cut(s) 611, 1007
BstBI TTCGAA 1 cut(s) 509
BstC8I GCNNGC 6 cut(s) 484, 525, 875, 1131, 1135, 1293
BstDEI CTNAG 6 cut(s) 380, 626, 680, 1365, 1725, 1962
BstDSI CCRYGG 1 cut(s) 1053
BstF5I GGATG 8 cut(s) 91, 839, 1063, 1252, 1301, 1411, 1783, 1911
BstFNI CGCG 1 cut(s) 1617
BstKTI GATC 4 cut(s) 112, 349, 608, 1353
BstMAI GTCTC 4 cut(s) 9, 588, 735, 1177
BstMBI GATC 4 cut(s) 109, 346, 605, 1350
BstMWI GCNNNNNNNGC 5 cut(s) 385, 483, 1172, 1202, 1594
BstNI CCWGG 3 cut(s) 593, 808, 1891
BstNSI RCATGY 4 cut(s) 167, 527, 583, 1448
BstSCI CCNGG 3 cut(s) 591, 806, 1889
BstUI CGCG 1 cut(s) 1617
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 2 cut(s) 197, 1929
BstX2I RGATCY 1 cut(s) 1350
BstYI RGATCY 1 cut(s) 1350
BstZ17I GTATAC 1 cut(s) 1633
Bsu15I ATCGAT 2 cut(s) 849, 1158
BsuI GTATCC 1 cut(s) 1426
BsuTUI ATCGAT 2 cut(s) 849, 1158
BtgI CCRYGG 1 cut(s) 1053
BtgZI GCGATG 1 cut(s) 1190
BtsCI GGATG 8 cut(s) 91, 839, 1063, 1252, 1301, 1411, 1783, 1911
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 5 cut(s) 25, 484, 1094, 1363, 1824
BveI ACCTGC 2 cut(s) 660, 1026
Cac8I GCNNGC 6 cut(s) 484, 525, 875, 1131, 1135, 1293
CaiI CAGNNNCTG 1 cut(s) 118
ClaI ATCGAT 2 cut(s) 849, 1158
CseI GACGC 1 cut(s) 460
Csp6I GTAC 3 cut(s) 417, 1198, 1830
CspCI CAANNNNNGTGG 4 cut(s) 1288, 1323, 1839, 1874
CviQI GTAC 3 cut(s) 417, 1198, 1830
DdeI CTNAG 6 cut(s) 380, 626, 680, 1365, 1725, 1962
DpnI GATC 4 cut(s) 111, 348, 607, 1352
DpnII GATC 4 cut(s) 109, 346, 605, 1350
Eam1104I CTCTTC 3 cut(s) 369, 1175, 1548
EarI CTCTTC 3 cut(s) 369, 1175, 1548
EciI GGCGGA 2 cut(s) 198, 1039
Eco130I CCWWGG 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 792
Eco32I GATATC 1 cut(s) 1324
Eco57I CTGAAG 5 cut(s) 197, 1227, 1260, 1339, 1662
EcoRII CCWGG 3 cut(s) 591, 806, 1889
EcoRV GATATC 1 cut(s) 1324
EcoT14I CCWWGG 1 cut(s) 1053
EcoT22I ATGCAT 1 cut(s) 1537
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 1053
FalI AAGNNNNNCTT 4 cut(s) 785, 817, 1251, 1283
FaqI GGGAC 1 cut(s) 1055
FauI CCCGC 1 cut(s) 510
FblI GTMKAC 3 cut(s) 73, 780, 1632
Fnu4HI GCNGC 2 cut(s) 386, 1586
FokI GGATG 8 cut(s) 78, 826, 1070, 1259, 1288, 1418, 1790, 1918
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 2 cut(s) 386, 1586
FspBI CTAG 9 cut(s) 435, 468, 483, 563, 720, 887, 900, 1292, 1758
GluI GCNGC 2 cut(s) 386, 1586
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 257
HapII CCGG 2 cut(s) 544, 1067
HgaI GACGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HinfI GANTC 5 cut(s) 532, 777, 1337, 1398, 1606
HpaII CCGG 2 cut(s) 544, 1067
HphI GGTGA 5 cut(s) 167, 308, 446, 1781, 1964
Hpy166II GTNNAC 4 cut(s) 74, 781, 1520, 1633
Hpy188I TCNGA 3 cut(s) 672, 1605, 1642
Hpy188III TCNNGA 4 cut(s) 435, 544, 1577, 1799
Hpy8I GTNNAC 4 cut(s) 74, 781, 1520, 1633
Hpy99I CGWCG 2 cut(s) 78, 476
HpyAV CCTTC 6 cut(s) 172, 461, 541, 697, 1534, 1873
HpyCH4III ACNGT 5 cut(s) 323, 338, 492, 1098, 1484
HpyCH4IV ACGT 4 cut(s) 12, 76, 610, 1006
HpyF10VI GCNNNNNNNGC 5 cut(s) 385, 483, 1172, 1202, 1594
HpyF3I CTNAG 6 cut(s) 380, 626, 680, 1365, 1725, 1962
HpySE526I ACGT 4 cut(s) 12, 76, 610, 1006
Kpn2I TCCGGA 1 cut(s) 543
Kzo9I GATC 4 cut(s) 109, 346, 605, 1350
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 211, 660
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 6 cut(s) 52, 676, 1522, 1729, 1768, 1800
MaeI CTAG 9 cut(s) 435, 468, 483, 563, 720, 887, 900, 1292, 1758
MaeII ACGT 4 cut(s) 12, 76, 610, 1006
MaeIII GTNAC 9 cut(s) 22, 332, 392, 611, 1085, 1270, 1327, 1358, 1466
MalI GATC 4 cut(s) 111, 348, 607, 1352
MbiI CCGCTC 1 cut(s) 1588
MboI GATC 4 cut(s) 109, 346, 605, 1350
MfeI CAATTG 2 cut(s) 662, 906
MflI RGATCY 1 cut(s) 1350
MhlI GDGCHC 2 cut(s) 364, 792
MluI ACGCGT 1 cut(s) 1615
MlyI GAGTC 2 cut(s) 786, 1331
MmeI TCCRAC 6 cut(s) 193, 682, 690, 1291, 1711, 1883
Mph1103I ATGCAT 1 cut(s) 1537
MroI TCCGGA 1 cut(s) 543
MseI TTAA 4 cut(s) 327, 495, 1592, 1913
MslI CAYNNNNRTG 2 cut(s) 357, 1616
MspI CCGG 2 cut(s) 544, 1067
MspR9I CCNGG 3 cut(s) 593, 808, 1891
MunI CAATTG 2 cut(s) 662, 906
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 3 cut(s) 593, 808, 1891
MvnI CGCG 1 cut(s) 1617
MwoI GCNNNNNNNGC 5 cut(s) 385, 483, 1172, 1202, 1594
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 4 cut(s) 109, 346, 605, 1350
NheI GCTAGC 2 cut(s) 482, 1291
NlaIV GGNNCC 3 cut(s) 207, 1666, 1888
NmeAIII GCCGAG 1 cut(s) 1433
NmuCI GTSAC 2 cut(s) 1270, 1358
NsiI ATGCAT 1 cut(s) 1537
NspI RCATGY 4 cut(s) 167, 527, 583, 1448
NspV TTCGAA 1 cut(s) 509
OliI CACNNNNGTG 2 cut(s) 357, 1616
PaeI GCATGC 1 cut(s) 527
PaqCI CACCTGC 1 cut(s) 1026
PciI ACATGT 3 cut(s) 163, 579, 1444
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 532, 1398, 1606
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 387, 1587
PleI GAGTC 2 cut(s) 785, 1331
PpsI GAGTC 2 cut(s) 785, 1331
Ppu21I YACGTR 2 cut(s) 611, 1007
PscI ACATGT 3 cut(s) 163, 579, 1444
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 3 cut(s) 591, 806, 1889
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 3 cut(s) 591, 806, 1889
PspN4I GGNNCC 3 cut(s) 207, 1666, 1888
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 1350
RsaI GTAC 3 cut(s) 418, 1199, 1831
RsaNI GTAC 3 cut(s) 417, 1198, 1830
RseI CAYNNNNRTG 2 cut(s) 357, 1616
SalI GTCGAC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 4 cut(s) 327, 495, 1592, 1913
SatI GCNGC 2 cut(s) 386, 1586
Sau3AI GATC 4 cut(s) 109, 346, 605, 1350
SchI GAGTC 2 cut(s) 786, 1331
ScrFI CCNGG 3 cut(s) 593, 808, 1891
SduI GDGCHC 2 cut(s) 364, 792
SfaNI GCATC 6 cut(s) 52, 676, 1522, 1729, 1768, 1800
SfuI TTCGAA 1 cut(s) 509
SmiMI CAYNNNNRTG 2 cut(s) 357, 1616
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SpeI ACTAGT 1 cut(s) 1757
SphI GCATGC 1 cut(s) 527
SsiI CCGC 5 cut(s) 209, 408, 503, 1050, 1586
SspMI CTAG 9 cut(s) 435, 468, 483, 563, 720, 887, 900, 1292, 1758
StyD4I CCNGG 3 cut(s) 591, 806, 1889
StyI CCWWGG 1 cut(s) 1053
TaaI ACNGT 5 cut(s) 323, 338, 492, 1098, 1484
TaiI ACGT 4 cut(s) 15, 79, 613, 1009
TaqI TCGA 5 cut(s) 73, 509, 849, 1158, 1701
TauI GCSGC 1 cut(s) 1588
TfiI GAWTC 3 cut(s) 532, 1398, 1606
Tru1I TTAA 4 cut(s) 327, 495, 1592, 1913
Tru9I TTAA 4 cut(s) 327, 495, 1592, 1913
TscAI CASTG 5 cut(s) 25, 484, 1101, 1363, 1831
TseFI GTSAC 2 cut(s) 1270, 1358
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 2 cut(s) 1270, 1358
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 5 cut(s) 25, 484, 1101, 1363, 1831
Van91I CCANNNNNTGG 1 cut(s) 102
XapI RAATTY 3 cut(s) 312, 618, 1511
XbaI TCTAGA 1 cut(s) 434
XceI RCATGY 4 cut(s) 167, 527, 583, 1448
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 3 cut(s) 73, 780, 1632
XspI CTAG 9 cut(s) 435, 468, 483, 563, 720, 887, 900, 1292, 1758
Zsp2I ATGCAT 1 cut(s) 1537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.