(-)-germacrene D synthase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Terpene_synth | PF01397 | 14 - 98 | 1.2e-28 | Terpene synthase, N-terminal domain |
| Terpene_synth_C | PF03936 | 155 - 292 | 1e-47 | Terpene synthase family, metal binding domain |
| Terpene_syn_C_2 | PF19086 | 196 - 293 | 2.1e-20 | Terpene synthase family 2, C-terminal metal binding |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 497, 732 |
| AatII | GACGTC | 1 cut(s) | 687 |
| Acc36I | ACCTGC | 1 cut(s) | 715 |
| AccI | GTMKAC | 1 cut(s) | 750 |
| AciI | CCGC | 2 cut(s) | 171, 594 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcyI | GRCGYC | 1 cut(s) | 684 |
| AfaI | GTAC | 2 cut(s) | 95, 545 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 180, 433, 570 |
| AflIII | ACRYGT | 1 cut(s) | 483 |
| AgsI | TTSAA | 8 cut(s) | 88, 206, 299, 409, 644, 674, 764, 851 |
| AjiI | CACGTC | 1 cut(s) | 475 |
| AleI | CACNNNNGTG | 1 cut(s) | 323 |
| Alw21I | GWGCWC | 1 cut(s) | 657 |
| Alw26I | GTCTC | 2 cut(s) | 46, 371 |
| AoxI | GGCC | 1 cut(s) | 899 |
| ApeKI | GCWGC | 1 cut(s) | 418 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| AspS9I | GGNCC | 1 cut(s) | 900 |
| AsuHPI | GGTGA | 2 cut(s) | 214, 583 |
| AsuII | TTCGAA | 2 cut(s) | 272, 549 |
| BanII | GRGCYC | 1 cut(s) | 657 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 657 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 2 cut(s) | 183, 435 |
| BceAI | ACGGC | 1 cut(s) | 475 |
| BciVI | GTATCC | 1 cut(s) | 177 |
| BclI | TGATCA | 1 cut(s) | 109 |
| BcoDI | GTCTC | 2 cut(s) | 46, 371 |
| BfaI | CTAG | 4 cut(s) | 215, 333, 570, 904 |
| BfmI | CTRYAG | 2 cut(s) | 416, 708 |
| BfuAI | ACCTGC | 1 cut(s) | 715 |
| BfuI | GTATCC | 1 cut(s) | 177 |
| BglII | AGATCT | 1 cut(s) | 697 |
| BisI | GCNGC | 2 cut(s) | 171, 419 |
| BlsI | GCNGC | 2 cut(s) | 172, 420 |
| BmgBI | CACGTC | 1 cut(s) | 475 |
| BmgT120I | GGNCC | 1 cut(s) | 900 |
| BmsI | GCATC | 3 cut(s) | 134, 324, 616 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| Bpu14I | TTCGAA | 2 cut(s) | 272, 549 |
| BpuEI | CTTGAG | 2 cut(s) | 154, 257 |
| Bsa29I | ATCGAT | 1 cut(s) | 612 |
| BsaHI | GRCGYC | 1 cut(s) | 684 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 180, 433, 570 |
| Bse1I | ACTGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 1 cut(s) | 744 |
| BseCI | ATCGAT | 1 cut(s) | 612 |
| BseGI | GGATG | 1 cut(s) | 894 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 180, 433, 570 |
| BseMI | GCAATG | 1 cut(s) | 744 |
| BseNI | ACTGG | 1 cut(s) | 654 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BseYI | CCCAGC | 1 cut(s) | 528 |
| BshFI | GGCC | 1 cut(s) | 901 |
| BshVI | ATCGAT | 1 cut(s) | 612 |
| BsiHKAI | GWGCWC | 1 cut(s) | 657 |
| BsiSI | CCGG | 1 cut(s) | 810 |
| BslFI | GGGAC | 2 cut(s) | 162, 695 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 180, 433, 570 |
| BsmAI | GTCTC | 2 cut(s) | 46, 371 |
| BsmFI | GGGAC | 2 cut(s) | 162, 695 |
| BsmI | GAATGC | 1 cut(s) | 365 |
| BsnI | GGCC | 1 cut(s) | 901 |
| Bsp119I | TTCGAA | 2 cut(s) | 272, 549 |
| Bsp1286I | GDGCHC | 1 cut(s) | 657 |
| Bsp143I | GATC | 3 cut(s) | 109, 243, 697 |
| BspACI | CCGC | 2 cut(s) | 171, 594 |
| BspANI | GGCC | 1 cut(s) | 901 |
| BspDI | ATCGAT | 1 cut(s) | 612 |
| BspHI | TCATGA | 1 cut(s) | 355 |
| BspMAI | CTGCAG | 2 cut(s) | 420, 712 |
| BspMI | ACCTGC | 1 cut(s) | 715 |
| BspQI | GCTCTTC | 1 cut(s) | 762 |
| BspT104I | TTCGAA | 2 cut(s) | 272, 549 |
| BsrDI | GCAATG | 1 cut(s) | 744 |
| BsrI | ACTGG | 1 cut(s) | 654 |
| BssMI | GATC | 3 cut(s) | 109, 243, 697 |
| BssNI | GRCGYC | 1 cut(s) | 684 |
| Bst4CI | ACNGT | 1 cut(s) | 254 |
| Bst6I | CTCTTC | 2 cut(s) | 201, 762 |
| BstACI | GRCGYC | 1 cut(s) | 684 |
| BstBI | TTCGAA | 2 cut(s) | 272, 549 |
| BstC8I | GCNNGC | 2 cut(s) | 774, 831 |
| BstDEI | CTNAG | 1 cut(s) | 179 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 568 |
| BstF5I | GGATG | 1 cut(s) | 894 |
| BstKTI | GATC | 3 cut(s) | 112, 246, 700 |
| BstMAI | GTCTC | 2 cut(s) | 46, 371 |
| BstMBI | GATC | 3 cut(s) | 109, 243, 697 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 815 |
| BstSFI | CTRYAG | 2 cut(s) | 416, 708 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BstX2I | RGATCY | 1 cut(s) | 697 |
| BstYI | RGATCY | 1 cut(s) | 697 |
| Bsu15I | ATCGAT | 1 cut(s) | 612 |
| BsuI | GTATCC | 1 cut(s) | 177 |
| BsuRI | GGCC | 1 cut(s) | 901 |
| BsuTUI | ATCGAT | 1 cut(s) | 612 |
| BtrI | CACGTC | 1 cut(s) | 475 |
| BtsCI | GGATG | 1 cut(s) | 894 |
| BtsIMutI | CAGTG | 1 cut(s) | 753 |
| BveI | ACCTGC | 1 cut(s) | 715 |
| Cac8I | GCNNGC | 2 cut(s) | 774, 831 |
| CciI | TCATGA | 1 cut(s) | 355 |
| Cfr13I | GGNCC | 1 cut(s) | 900 |
| ClaI | ATCGAT | 1 cut(s) | 612 |
| Csp6I | GTAC | 2 cut(s) | 94, 544 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 217, 252 |
| CviAII | CATG | 6 cut(s) | 75, 97, 356, 582, 598, 897 |
| CviQI | GTAC | 2 cut(s) | 94, 544 |
| DdeI | CTNAG | 1 cut(s) | 179 |
| DpnI | GATC | 3 cut(s) | 111, 245, 699 |
| DpnII | GATC | 3 cut(s) | 109, 243, 697 |
| Eam1104I | CTCTTC | 2 cut(s) | 201, 762 |
| EarI | CTCTTC | 2 cut(s) | 201, 762 |
| Ecl136II | GAGCTC | 1 cut(s) | 655 |
| Eco24I | GRGCYC | 1 cut(s) | 657 |
| Eco53kI | GAGCTC | 1 cut(s) | 655 |
| EcoICRI | GAGCTC | 1 cut(s) | 655 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 568 |
| EcoT38I | GRGCYC | 1 cut(s) | 657 |
| FaeI | CATG | 6 cut(s) | 78, 100, 359, 585, 601, 900 |
| FalI | AAGNNNNNCTT | 5 cut(s) | 34, 186, 218, 756, 788 |
| FaqI | GGGAC | 2 cut(s) | 162, 695 |
| FatI | CATG | 6 cut(s) | 74, 96, 355, 581, 597, 896 |
| FbaI | TGATCA | 1 cut(s) | 109 |
| FblI | GTMKAC | 1 cut(s) | 750 |
| Fnu4HI | GCNGC | 2 cut(s) | 171, 419 |
| FokI | GGATG | 1 cut(s) | 901 |
| FriOI | GRGCYC | 1 cut(s) | 657 |
| Fsp4HI | GCNGC | 2 cut(s) | 171, 419 |
| FspBI | CTAG | 4 cut(s) | 215, 333, 570, 904 |
| GluI | GCNGC | 2 cut(s) | 171, 419 |
| GsaI | CCCAGC | 1 cut(s) | 532 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeIII | GGCC | 1 cut(s) | 901 |
| HapII | CCGG | 1 cut(s) | 810 |
| Hin1I | GRCGYC | 1 cut(s) | 684 |
| Hin1II | CATG | 6 cut(s) | 78, 100, 359, 585, 601, 900 |
| HindIII | AAGCTT | 2 cut(s) | 157, 516 |
| HinfI | GANTC | 5 cut(s) | 44, 239, 365, 379, 798 |
| HpaII | CCGG | 1 cut(s) | 810 |
| HphI | GGTGA | 2 cut(s) | 214, 583 |
| Hpy166II | GTNNAC | 2 cut(s) | 544, 751 |
| Hpy188I | TCNGA | 1 cut(s) | 309 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 147, 236, 356, 385 |
| Hpy8I | GTNNAC | 2 cut(s) | 544, 751 |
| HpyAV | CCTTC | 2 cut(s) | 304, 457 |
| HpyCH4III | ACNGT | 1 cut(s) | 254 |
| HpyCH4IV | ACGT | 3 cut(s) | 474, 485, 684 |
| HpyCH4V | TGCA | 6 cut(s) | 395, 418, 585, 710, 776, 865 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 815 |
| HpyF3I | CTNAG | 1 cut(s) | 179 |
| HpySE526I | ACGT | 3 cut(s) | 474, 485, 684 |
| Hsp92I | GRCGYC | 1 cut(s) | 684 |
| Hsp92II | CATG | 6 cut(s) | 78, 100, 359, 585, 601, 900 |
| Ksp22I | TGATCA | 1 cut(s) | 109 |
| Kzo9I | GATC | 3 cut(s) | 109, 243, 697 |
| LguI | GCTCTTC | 1 cut(s) | 762 |
| LmnI | GCTCC | 1 cut(s) | 652 |
| LpnPI | CCDG | 4 cut(s) | 514, 635, 720, 823 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| LweI | GCATC | 3 cut(s) | 134, 324, 616 |
| MaeI | CTAG | 4 cut(s) | 215, 333, 570, 904 |
| MaeII | ACGT | 3 cut(s) | 474, 485, 684 |
| MaeIII | GTNAC | 4 cut(s) | 62, 508, 589, 702 |
| MalI | GATC | 3 cut(s) | 111, 245, 699 |
| MboI | GATC | 3 cut(s) | 109, 243, 697 |
| MboII | GAAGA | 6 cut(s) | 22, 206, 218, 656, 776, 779 |
| MflI | RGATCY | 1 cut(s) | 697 |
| MhlI | GDGCHC | 1 cut(s) | 657 |
| MluCI | AATT | 5 cut(s) | 116, 294, 447, 759, 838 |
| MlyI | GAGTC | 2 cut(s) | 248, 373 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 4 cut(s) | 202, 273, 564, 567 |
| MseI | TTAA | 4 cut(s) | 120, 155, 257, 293 |
| MslI | CAYNNNNRTG | 2 cut(s) | 323, 596 |
| MspI | CCGG | 1 cut(s) | 810 |
| Mva1269I | GAATGC | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 815 |
| NdeII | GATC | 3 cut(s) | 109, 243, 697 |
| NlaIII | CATG | 6 cut(s) | 78, 100, 359, 585, 601, 900 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| NspV | TTCGAA | 2 cut(s) | 272, 549 |
| OliI | CACNNNNGTG | 1 cut(s) | 323 |
| PagI | TCATGA | 1 cut(s) | 355 |
| PciSI | GCTCTTC | 1 cut(s) | 762 |
| PctI | GAATGC | 1 cut(s) | 365 |
| PfeI | GAWTC | 3 cut(s) | 44, 365, 798 |
| PkrI | GCNGC | 2 cut(s) | 172, 420 |
| PleI | GAGTC | 2 cut(s) | 247, 373 |
| PpsI | GAGTC | 2 cut(s) | 247, 373 |
| PsiI | TTATAA | 2 cut(s) | 497, 732 |
| Psp124BI | GAGCTC | 1 cut(s) | 657 |
| PspFI | CCCAGC | 1 cut(s) | 528 |
| PspPI | GGNCC | 1 cut(s) | 900 |
| PstI | CTGCAG | 2 cut(s) | 420, 712 |
| PsuI | RGATCY | 1 cut(s) | 697 |
| RsaI | GTAC | 2 cut(s) | 95, 545 |
| RsaNI | GTAC | 2 cut(s) | 94, 544 |
| RseI | CAYNNNNRTG | 2 cut(s) | 323, 596 |
| SacI | GAGCTC | 1 cut(s) | 657 |
| SapI | GCTCTTC | 1 cut(s) | 762 |
| SaqAI | TTAA | 4 cut(s) | 120, 155, 257, 293 |
| SatI | GCNGC | 2 cut(s) | 171, 419 |
| Sau3AI | GATC | 3 cut(s) | 109, 243, 697 |
| Sau96I | GGNCC | 1 cut(s) | 900 |
| SchI | GAGTC | 2 cut(s) | 248, 373 |
| SduI | GDGCHC | 1 cut(s) | 657 |
| SfaNI | GCATC | 3 cut(s) | 134, 324, 616 |
| SfcI | CTRYAG | 2 cut(s) | 416, 708 |
| SfuI | TTCGAA | 2 cut(s) | 272, 549 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 323, 596 |
| SmlI | CTYRAG | 2 cut(s) | 133, 236 |
| SmoI | CTYRAG | 2 cut(s) | 133, 236 |
| Sse9I | AATT | 5 cut(s) | 116, 294, 447, 759, 838 |
| SsiI | CCGC | 2 cut(s) | 171, 594 |
| SspI | AATATT | 1 cut(s) | 560 |
| SspMI | CTAG | 4 cut(s) | 215, 333, 570, 904 |
| SstI | GAGCTC | 1 cut(s) | 657 |
| TaaI | ACNGT | 1 cut(s) | 254 |
| TaiI | ACGT | 3 cut(s) | 477, 488, 687 |
| TaqI | TCGA | 6 cut(s) | 42, 242, 272, 549, 612, 796 |
| TasI | AATT | 5 cut(s) | 116, 294, 447, 759, 838 |
| TatI | WGTACW | 2 cut(s) | 93, 543 |
| TauI | GCSGC | 1 cut(s) | 173 |
| TfiI | GAWTC | 3 cut(s) | 44, 365, 798 |
| Tru1I | TTAA | 4 cut(s) | 120, 155, 257, 293 |
| Tru9I | TTAA | 4 cut(s) | 120, 155, 257, 293 |
| TscAI | CASTG | 1 cut(s) | 760 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 1 cut(s) | 418 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 6 cut(s) | 63, 180, 372, 734, 836, 905 |
| TspGWI | ACGGA | 2 cut(s) | 25, 204 |
| TspRI | CASTG | 1 cut(s) | 760 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 568 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 750 |
| XspI | CTAG | 4 cut(s) | 215, 333, 570, 904 |
| ZraI | GACGTC | 1 cut(s) | 685 |